Wall clock time and date at job start Tue Mar 31 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50708 * 119.99779 * 2 1 4 4 O 1.42904 * 109.46989 * 134.99895 * 3 2 1 5 5 C 1.42900 * 113.99352 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46704 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00105 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99947 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99814 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47334 * 324.99957 * 9 8 6 11 11 C 1.52997 * 109.47346 * 85.00462 * 9 8 6 12 12 C 1.53000 * 109.47122 * 204.99899 * 9 8 6 13 13 C 1.53936 * 113.73551 * 161.72839 * 12 9 8 14 14 N 1.47964 * 86.18197 * 221.92392 * 13 12 9 15 15 C 1.46896 * 110.99673 * 137.58280 * 14 13 12 16 16 C 1.50704 * 109.47130 * 90.64197 * 15 14 13 17 17 O 1.21298 * 119.99829 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99913 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99890 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99888 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00221 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46849 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47160 * 119.99839 * 23 21 19 26 26 H 1.48492 * 109.47170 * 240.00221 * 23 21 19 27 27 C 1.47960 * 90.76026 * 24.68966 * 14 13 12 28 28 H 1.07994 * 120.00203 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99956 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00595 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46996 * 14.99478 * 3 2 1 32 32 H 1.08997 * 109.46824 * 254.99322 * 3 2 1 33 33 H 1.09002 * 109.47243 * 59.99701 * 5 4 3 34 34 H 1.08999 * 109.47386 * 299.99554 * 5 4 3 35 35 H 0.97004 * 120.00012 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.46779 * 300.04658 * 11 9 8 37 37 H 1.09007 * 109.47194 * 60.04262 * 11 9 8 38 38 H 1.08992 * 109.47477 * 180.02562 * 11 9 8 39 39 H 1.09003 * 112.94304 * 293.44308 * 12 9 8 40 40 H 1.08999 * 113.76013 * 336.24225 * 13 12 9 41 41 H 1.09003 * 113.75580 * 107.60586 * 13 12 9 42 42 H 1.08997 * 109.47205 * 210.63788 * 15 14 13 43 43 H 1.08998 * 109.47782 * 330.64145 * 15 14 13 44 44 H 0.97000 * 120.00248 * 0.02562 * 18 16 15 45 45 H 0.97005 * 120.00153 * 179.97438 * 22 21 19 46 46 H 1.09005 * 113.75898 * 220.98755 * 27 14 13 47 47 H 1.09003 * 113.86036 * 89.64385 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9083 2.4351 1.0320 6 6 4.9938 2.2571 2.0621 7 8 5.0890 1.2110 2.6682 8 7 5.8595 3.2602 2.3090 9 6 6.9150 3.0870 3.3100 10 1 6.5419 2.4720 4.1289 11 6 8.1213 2.4010 2.6657 12 6 7.3351 4.4554 3.8503 13 6 8.0920 4.3873 5.1889 14 7 7.2806 5.5564 5.5939 15 6 6.8055 5.4139 6.9766 16 6 7.8080 6.0301 7.9182 17 8 8.8190 6.5376 7.4804 18 7 7.5811 6.0172 9.2467 19 6 8.4934 6.5773 10.1033 20 1 9.3939 7.0285 9.7136 21 6 8.2597 6.5636 11.4729 22 7 7.1647 6.0133 11.9473 23 14 9.5023 7.3274 12.6401 24 1 10.6407 7.8768 11.8607 25 1 8.8539 8.4215 13.4066 26 1 9.9998 6.2915 13.5806 27 6 6.2235 5.1819 4.6288 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3854 2.1161 0.2659 32 1 2.4755 1.4868 -0.9926 33 1 3.2687 3.2698 1.3190 34 1 4.3586 2.6397 0.0607 35 1 5.7836 4.0968 1.8240 36 1 7.8219 1.4265 2.2800 37 1 8.4950 3.0165 1.8472 38 1 8.9065 2.2717 3.4105 39 1 7.8230 5.0771 3.0995 40 1 7.8832 3.4866 5.7662 41 1 9.1574 4.6009 5.1023 42 1 5.8463 5.9199 7.0853 43 1 6.6873 4.3564 7.2131 44 1 6.7729 5.6110 9.5968 45 1 7.0018 6.0033 12.9035 46 1 5.7958 6.0305 4.0947 47 1 5.4670 4.5138 5.0406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485494780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:03 Heat of formation + Delta-G solvation = -57.815908 kcal Electronic energy + Delta-G solvation = -26719.982927 eV Core-core repulsion = 22711.936769 eV Total energy + Delta-G solvation = -4008.046158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60532 -39.64553 -38.18946 -37.68490 -35.41802 -34.27386 -33.85117 -31.88096 -31.18462 -29.61427 -28.46251 -26.19150 -25.81528 -25.70614 -24.08773 -21.99670 -20.88620 -20.43370 -19.69174 -19.18240 -17.88672 -17.61493 -17.22293 -16.81618 -16.29123 -15.91916 -15.70873 -15.49115 -15.03240 -14.80810 -14.54319 -14.36699 -14.00358 -13.71722 -13.59032 -13.41214 -13.01424 -12.82644 -12.63115 -12.57493 -12.46173 -12.29197 -11.94935 -11.55311 -11.44339 -11.30255 -11.07380 -10.92339 -10.85125 -10.58147 -10.45150 -10.32049 -10.19040 -10.00997 -9.78840 -9.48022 -9.36490 -8.70248 -8.14360 -7.92753 -6.38568 -3.79304 1.66017 2.34627 2.52348 3.18395 3.28547 3.35931 3.60496 3.90401 3.96027 4.23588 4.25774 4.42543 4.53796 4.55912 4.60404 4.68703 4.72284 4.86348 4.97143 5.02653 5.04602 5.13731 5.21222 5.26832 5.40161 5.41865 5.45904 5.52492 5.67130 5.69727 5.73576 5.77643 5.94166 6.01018 6.10802 6.14569 6.18747 6.27317 6.30762 6.58432 6.60223 7.18040 7.21647 7.58225 7.96108 8.09685 8.65643 9.21807 9.58407 10.10803 10.79427 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.001839 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.488189 B =15220.853652 C =16028.884078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.087 3.913 4 O -0.359 6.359 5 C 0.044 3.956 6 C 0.513 3.487 7 O -0.517 6.517 8 N -0.722 5.722 9 C 0.152 3.848 10 H 0.089 0.911 11 C -0.162 4.162 12 C -0.126 4.126 13 C 0.023 3.977 14 N -0.449 5.449 15 C 0.010 3.990 16 C 0.447 3.553 17 O -0.576 6.576 18 N -0.568 5.568 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.004 3.996 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.401 0.599 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.087 0.913 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.871 -8.217 -25.622 29.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.170 4.170 3 C 0.011 3.989 4 O -0.278 6.278 5 C -0.037 4.037 6 C 0.298 3.702 7 O -0.391 6.391 8 N -0.375 5.375 9 C 0.048 3.952 10 H 0.107 0.893 11 C -0.220 4.220 12 C -0.145 4.145 13 C -0.106 4.106 14 N -0.170 5.170 15 C -0.122 4.122 16 C 0.232 3.768 17 O -0.459 6.459 18 N -0.205 5.205 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.125 4.125 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.235 0.765 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.865 -8.163 -25.139 28.212 hybrid contribution -0.523 -0.006 0.688 0.864 sum -10.388 -8.169 -24.451 27.794 Atomic orbital electron populations 1.23857 0.95502 1.02413 0.99742 1.22707 0.95630 0.98152 1.00467 1.21628 0.88720 0.96340 0.92259 1.88057 1.44330 1.34853 1.60532 1.22214 0.93318 0.89440 0.98681 1.20210 0.82200 0.84119 0.83653 1.90754 1.72216 1.26797 1.49377 1.45927 1.31905 1.17252 1.42457 1.21067 0.87096 0.96250 0.90835 0.89259 1.22142 0.97660 1.00835 1.01387 1.23350 0.98203 0.95129 0.97859 1.23922 1.00614 0.93158 0.92951 1.68380 1.10177 1.36740 1.01747 1.22482 0.99012 1.00031 0.90710 1.19692 0.88545 0.85651 0.82922 1.90518 1.29287 1.49399 1.76704 1.41890 1.21996 1.52213 1.04410 1.19750 1.02358 1.33626 0.86972 0.87906 1.25255 0.97463 0.97697 0.97625 1.69622 1.25500 1.44924 1.14421 0.85803 0.80223 0.78556 0.79776 1.19234 1.20787 1.20796 1.23978 0.94591 0.99009 0.94902 0.88367 0.87641 0.86391 0.92468 0.92080 0.90104 0.90203 0.76538 0.92169 0.92320 0.91095 0.87662 0.91191 0.88737 0.89503 0.92415 0.77566 0.91978 0.89457 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 14.31 29.02 0.42 -0.58 16 2 C -0.15 -1.05 9.89 -36.02 -0.36 -1.41 16 3 C 0.09 0.58 6.35 36.01 0.23 0.81 16 4 O -0.36 -3.62 9.86 -55.14 -0.54 -4.16 16 5 C 0.04 0.31 6.42 36.01 0.23 0.54 16 6 C 0.51 5.26 7.87 -10.98 -0.09 5.17 16 7 O -0.52 -7.92 16.16 -14.35 -0.23 -8.15 16 8 N -0.72 -5.64 4.94 -53.81 -0.27 -5.90 16 9 C 0.15 1.46 2.29 -67.93 -0.16 1.30 16 10 H 0.09 1.07 7.48 -51.93 -0.39 0.68 16 11 C -0.16 -1.47 9.44 37.16 0.35 -1.12 16 12 C -0.13 -1.28 3.35 -89.69 -0.30 -1.58 16 13 C 0.02 0.32 7.41 -2.76 -0.02 0.30 16 14 N -0.45 -7.30 5.65 -239.71 -1.35 -8.65 16 15 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 16 C 0.45 10.83 7.83 -10.99 -0.09 10.74 16 17 O -0.58 -16.05 16.01 5.54 0.09 -15.96 16 18 N -0.57 -14.72 5.29 -10.96 -0.06 -14.77 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 23 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 C 0.00 0.05 7.38 -2.77 -0.02 0.03 16 28 H 0.10 0.44 7.90 -52.49 -0.41 0.03 16 29 H 0.11 0.48 8.06 -52.49 -0.42 0.06 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.06 0.30 7.86 -51.93 -0.41 -0.11 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.40 1.90 8.60 -40.82 -0.35 1.55 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.95 7.36 -51.93 -0.38 0.57 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 43 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 44 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -36.47 400.09 -8.34 -44.81 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.64 Total: 8.47 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.07 Total: 6.22 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.95 Total: -53.56 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.69 Total: -28.28 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.47 -8.34 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485494780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.004 kcal (2) G-P(sol) polarization free energy of solvation -36.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds