Wall clock time and date at job start Tue Mar 31 2020 06:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50708 * 119.99779 * 2 1 4 4 O 1.42904 * 109.46989 * 134.99895 * 3 2 1 5 5 C 1.42900 * 113.99352 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46704 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00105 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99947 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99814 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47334 * 324.99957 * 9 8 6 11 11 C 1.52997 * 109.47346 * 85.00462 * 9 8 6 12 12 C 1.53000 * 109.47122 * 204.99899 * 9 8 6 13 13 C 1.53936 * 113.73551 * 161.72839 * 12 9 8 14 14 N 1.47964 * 86.18197 * 221.92392 * 13 12 9 15 15 C 1.46896 * 110.99673 * 137.58280 * 14 13 12 16 16 C 1.50704 * 109.47130 * 90.64197 * 15 14 13 17 17 O 1.21298 * 119.99829 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99913 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99890 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99888 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00221 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46849 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47160 * 119.99839 * 23 21 19 26 26 H 1.48492 * 109.47170 * 240.00221 * 23 21 19 27 27 C 1.47960 * 90.76026 * 24.68966 * 14 13 12 28 28 H 1.07994 * 120.00203 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99956 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00595 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46996 * 14.99478 * 3 2 1 32 32 H 1.08997 * 109.46824 * 254.99322 * 3 2 1 33 33 H 1.09002 * 109.47243 * 59.99701 * 5 4 3 34 34 H 1.08999 * 109.47386 * 299.99554 * 5 4 3 35 35 H 0.97004 * 120.00012 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.46779 * 300.04658 * 11 9 8 37 37 H 1.09007 * 109.47194 * 60.04262 * 11 9 8 38 38 H 1.08992 * 109.47477 * 180.02562 * 11 9 8 39 39 H 1.09003 * 112.94304 * 293.44308 * 12 9 8 40 40 H 1.08999 * 113.76013 * 336.24225 * 13 12 9 41 41 H 1.09003 * 113.75580 * 107.60586 * 13 12 9 42 42 H 1.08997 * 109.47205 * 210.63788 * 15 14 13 43 43 H 1.08998 * 109.47782 * 330.64145 * 15 14 13 44 44 H 0.97000 * 120.00248 * 0.02562 * 18 16 15 45 45 H 0.97005 * 120.00153 * 179.97438 * 22 21 19 46 46 H 1.09005 * 113.75898 * 220.98755 * 27 14 13 47 47 H 1.09003 * 113.86036 * 89.64385 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9083 2.4351 1.0320 6 6 4.9938 2.2571 2.0621 7 8 5.0890 1.2110 2.6682 8 7 5.8595 3.2602 2.3090 9 6 6.9150 3.0870 3.3100 10 1 6.5419 2.4720 4.1289 11 6 8.1213 2.4010 2.6657 12 6 7.3351 4.4554 3.8503 13 6 8.0920 4.3873 5.1889 14 7 7.2806 5.5564 5.5939 15 6 6.8055 5.4139 6.9766 16 6 7.8080 6.0301 7.9182 17 8 8.8190 6.5376 7.4804 18 7 7.5811 6.0172 9.2467 19 6 8.4934 6.5773 10.1033 20 1 9.3939 7.0285 9.7136 21 6 8.2597 6.5636 11.4729 22 7 7.1647 6.0133 11.9473 23 14 9.5023 7.3274 12.6401 24 1 10.6407 7.8768 11.8607 25 1 8.8539 8.4215 13.4066 26 1 9.9998 6.2915 13.5806 27 6 6.2235 5.1819 4.6288 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3854 2.1161 0.2659 32 1 2.4755 1.4868 -0.9926 33 1 3.2687 3.2698 1.3190 34 1 4.3586 2.6397 0.0607 35 1 5.7836 4.0968 1.8240 36 1 7.8219 1.4265 2.2800 37 1 8.4950 3.0165 1.8472 38 1 8.9065 2.2717 3.4105 39 1 7.8230 5.0771 3.0995 40 1 7.8832 3.4866 5.7662 41 1 9.1574 4.6009 5.1023 42 1 5.8463 5.9199 7.0853 43 1 6.6873 4.3564 7.2131 44 1 6.7729 5.6110 9.5968 45 1 7.0018 6.0033 12.9035 46 1 5.7958 6.0305 4.0947 47 1 5.4670 4.5138 5.0406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485494780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:02 Heat of formation + Delta-G solvation = -86.672350 kcal Electronic energy + Delta-G solvation = -26721.234237 eV Core-core repulsion = 22711.936769 eV Total energy + Delta-G solvation = -4009.297467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58601 -40.61907 -39.60319 -38.70948 -36.36545 -35.88934 -34.75445 -33.32882 -32.72625 -30.82931 -29.04988 -27.44339 -27.03901 -26.41512 -25.57530 -23.01425 -21.65090 -21.00635 -20.98436 -20.56657 -19.90029 -18.28889 -18.04035 -17.75968 -17.36428 -16.91976 -16.71806 -16.58867 -16.36129 -16.13187 -15.68147 -15.53331 -15.32608 -14.85545 -14.84003 -14.16309 -14.06207 -14.03665 -13.70032 -13.53350 -13.47011 -13.17516 -13.04136 -12.99453 -12.88397 -12.45540 -12.41509 -12.13101 -11.93234 -11.86122 -11.84591 -11.60481 -11.50729 -10.97382 -10.81641 -10.38577 -10.25288 -10.14543 -10.01934 -9.62751 -8.47467 -5.96552 1.20068 1.35973 1.40748 1.55415 1.60534 1.88986 2.04771 2.28062 2.77309 3.06140 3.18628 3.35400 3.43505 3.65095 3.80694 4.07610 4.10742 4.16609 4.19031 4.20545 4.28159 4.31873 4.34278 4.40176 4.47670 4.48734 4.50738 4.52922 4.62155 4.76534 4.79136 4.83614 4.97982 4.99499 5.19652 5.32415 5.39483 5.42995 5.50088 5.66546 5.70816 5.89459 6.08019 6.11139 6.59626 6.60456 7.12227 7.28106 7.55589 8.11830 8.70298 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021135 B = 0.001839 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.488189 B =15220.853652 C =16028.884078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.178 4.178 3 C 0.085 3.915 4 O -0.400 6.400 5 C 0.045 3.955 6 C 0.509 3.491 7 O -0.578 6.578 8 N -0.704 5.704 9 C 0.159 3.841 10 H 0.064 0.936 11 C -0.158 4.158 12 C -0.096 4.096 13 C 0.012 3.988 14 N -0.481 5.481 15 C 0.023 3.977 16 C 0.442 3.558 17 O -0.617 6.617 18 N -0.577 5.577 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.012 3.988 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.420 0.580 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.109 0.891 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.072 -7.238 -27.103 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.009 3.991 4 O -0.319 6.319 5 C -0.034 4.034 6 C 0.296 3.704 7 O -0.456 6.456 8 N -0.358 5.358 9 C 0.054 3.946 10 H 0.082 0.918 11 C -0.216 4.216 12 C -0.115 4.115 13 C -0.117 4.117 14 N -0.203 5.203 15 C -0.109 4.109 16 C 0.230 3.770 17 O -0.503 6.503 18 N -0.215 5.215 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.116 4.116 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.258 0.742 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.143 0.857 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.091 0.909 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.127 0.873 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.098 -7.155 -26.653 29.745 hybrid contribution -0.172 -0.322 1.105 1.163 sum -11.269 -7.477 -25.549 28.907 Atomic orbital electron populations 1.24056 0.95114 1.03459 0.97925 1.22812 0.96313 0.98246 1.02241 1.21780 0.88330 0.96421 0.92522 1.88006 1.45519 1.36614 1.61778 1.22378 0.92682 0.89335 0.99043 1.20904 0.82655 0.83349 0.83506 1.90732 1.73869 1.29236 1.51786 1.45732 1.30746 1.17718 1.41637 1.20827 0.87668 0.95410 0.90733 0.91810 1.22096 0.97316 1.00347 1.01843 1.23134 0.96672 0.95303 0.96437 1.23962 0.99931 0.92379 0.95424 1.68352 1.12604 1.38275 1.01083 1.22347 0.97497 1.00379 0.90641 1.20797 0.88941 0.84318 0.82983 1.90479 1.31409 1.51007 1.77388 1.41978 1.21856 1.52561 1.05096 1.19709 1.02727 1.35596 0.88264 0.90367 1.26062 0.99256 0.97579 0.98487 1.69683 1.26478 1.44966 1.15187 0.84849 0.77718 0.78100 0.77521 1.19766 1.19512 1.19601 1.24070 0.94094 0.99973 0.93489 0.86958 0.86970 0.87741 0.90846 0.90339 0.87173 0.86914 0.74238 0.93686 0.90352 0.91398 0.85740 0.91389 0.90411 0.87604 0.90855 0.77137 0.91319 0.87257 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 14.31 67.78 0.97 -0.69 16 2 C -0.18 -2.37 9.89 25.65 0.25 -2.12 16 3 C 0.08 0.98 6.35 71.24 0.45 1.43 16 4 O -0.40 -7.59 9.86 -129.94 -1.28 -8.87 16 5 C 0.04 0.51 6.42 71.24 0.46 0.97 16 6 C 0.51 9.71 7.87 87.66 0.69 10.40 16 7 O -0.58 -17.94 16.16 16.02 0.26 -17.68 16 8 N -0.70 -9.30 4.94 -442.54 -2.19 -11.48 16 9 C 0.16 2.82 2.29 44.99 0.10 2.93 16 10 H 0.06 1.52 7.48 -2.39 -0.02 1.50 16 11 C -0.16 -2.71 9.44 71.98 0.68 -2.03 16 12 C -0.10 -1.74 3.35 -10.15 -0.03 -1.78 16 13 C 0.01 0.34 7.41 86.41 0.64 0.98 16 14 N -0.48 -15.11 5.65 -912.31 -5.15 -20.27 16 15 C 0.02 0.82 5.28 85.56 0.45 1.27 16 16 C 0.44 21.83 7.83 87.66 0.69 22.52 16 17 O -0.62 -35.40 16.01 -3.09 -0.05 -35.45 16 18 N -0.58 -30.59 5.29 -306.97 -1.62 -32.21 16 19 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 22 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 23 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 C 0.01 0.24 7.38 86.41 0.64 0.88 16 28 H 0.11 0.76 7.90 -2.91 -0.02 0.74 16 29 H 0.11 0.89 8.06 -2.91 -0.02 0.87 16 30 H 0.10 1.60 8.06 -2.91 -0.02 1.57 16 31 H 0.07 0.57 7.86 -2.39 -0.02 0.55 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.42 2.36 8.60 -92.71 -0.80 1.57 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 39 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.87 7.36 -2.39 -0.02 1.85 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.11 3.34 8.08 -2.39 -0.02 3.32 16 43 H 0.07 2.37 7.38 -2.39 -0.02 2.35 16 44 H 0.39 19.91 7.90 -92.71 -0.73 19.18 16 45 H 0.28 14.23 8.31 -92.70 -0.77 13.46 16 46 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 47 H 0.07 1.46 7.88 -2.39 -0.02 1.44 16 Total: -1.00 -82.56 400.09 -1.01 -83.57 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.55 Total: 31.30 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 7.27 Total: 15.84 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -8.68 Total: -114.44 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -1.07 Total: -62.00 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -82.56 -1.01 -83.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485494780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.103 kcal (2) G-P(sol) polarization free energy of solvation -82.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds