Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50708 * 120.00224 * 2 1 4 4 O 1.42898 * 109.46832 * 134.99971 * 3 2 1 5 5 C 1.42900 * 113.99575 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47361 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 H 1.09000 * 110.27250 * 325.41993 * 9 8 6 11 11 C 1.54601 * 110.31163 * 87.51297 * 9 8 6 12 12 C 1.55192 * 102.80192 * 96.97798 * 11 9 8 13 13 N 1.48540 * 103.23594 * 37.43676 * 12 11 9 14 14 C 1.46899 * 110.99655 * 200.25526 * 13 12 11 15 15 C 1.50704 * 109.47245 * 287.39619 * 14 13 12 16 16 O 1.21291 * 119.99483 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99987 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00151 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99465 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00404 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99660 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99992 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47384 * 60.00326 * 22 20 18 24 24 H 1.48497 * 109.46968 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47285 * 300.00375 * 22 20 18 26 26 C 1.47900 * 105.82102 * 320.76620 * 13 12 11 27 27 H 1.09000 * 109.91717 * 265.98482 * 26 13 12 28 28 C 1.52999 * 109.91781 * 144.68323 * 26 13 12 29 29 H 1.07999 * 119.99846 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00221 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99846 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46755 * 14.99730 * 3 2 1 33 33 H 1.08994 * 109.46862 * 255.00255 * 3 2 1 34 34 H 1.08998 * 109.47421 * 59.99896 * 5 4 3 35 35 H 1.09002 * 109.47461 * 300.00159 * 5 4 3 36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 37 37 H 1.08998 * 110.71906 * 215.31655 * 11 9 8 38 38 H 1.08994 * 110.72001 * 338.59857 * 11 9 8 39 39 H 1.09004 * 110.68260 * 278.98839 * 12 11 9 40 40 H 1.08996 * 110.78306 * 155.93221 * 12 11 9 41 41 H 1.09002 * 109.47340 * 47.39437 * 14 13 12 42 42 H 1.08997 * 109.47311 * 167.39456 * 14 13 12 43 43 H 0.97002 * 119.99868 * 0.02562 * 17 15 14 44 44 H 0.97000 * 119.99523 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.46997 * 302.41281 * 28 26 13 46 46 H 1.09001 * 109.46470 * 62.41007 * 28 26 13 47 47 H 1.08999 * 109.46806 * 182.40860 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9077 2.4352 1.0328 6 6 4.9941 2.2567 2.0619 7 8 5.0897 1.2102 2.6674 8 7 5.8588 3.2604 2.3102 9 6 6.9186 3.0846 3.3062 10 1 6.5657 2.4601 4.1269 11 6 8.1702 2.4551 2.6527 12 6 9.0601 3.6908 2.3531 13 7 8.8257 4.5711 3.5263 14 6 9.1857 5.9622 3.2208 15 6 10.6857 6.0891 3.1510 16 8 11.3859 5.1166 3.3379 17 7 11.2491 7.2836 2.8820 18 6 12.6137 7.3992 2.8190 19 1 13.2373 6.5330 2.9846 20 6 13.1946 8.6305 2.5411 21 7 12.4359 9.6843 2.3392 22 14 15.0539 8.7878 2.4546 23 1 15.5772 7.8958 1.3890 24 1 15.4178 10.1942 2.1464 25 1 15.6449 8.3988 3.7602 26 6 7.3847 4.4527 3.8378 27 1 6.8312 5.2512 3.3436 28 6 7.1709 4.5243 5.3511 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3855 2.1161 0.2659 33 1 2.4755 1.4868 -0.9926 34 1 3.2678 3.2694 1.3205 35 1 4.3580 2.6408 0.0617 36 1 5.7820 4.0975 1.8261 37 1 8.6690 1.7789 3.3470 38 1 7.9048 1.9368 1.7313 39 1 8.7404 4.1816 1.4338 40 1 10.1100 3.4051 2.2901 41 1 8.7519 6.2477 2.2625 42 1 8.8016 6.6170 4.0030 43 1 10.6890 8.0616 2.7337 44 1 12.8414 10.5439 2.1456 45 1 7.7452 3.7354 5.8368 46 1 7.5031 5.4949 5.7193 47 1 6.1122 4.3935 5.5750 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489255957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = -109.687371 kcal Electronic energy + Delta-G solvation = -27184.030819 eV Core-core repulsion = 23173.735345 eV Total energy + Delta-G solvation = -4010.295473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40918 -40.36376 -39.36565 -38.54365 -35.99457 -35.32968 -34.75939 -33.28577 -32.35538 -32.29167 -29.53425 -27.98185 -26.71878 -25.84867 -25.74900 -22.81070 -21.52564 -21.42292 -20.95893 -20.70185 -19.85784 -18.29941 -18.17079 -17.56290 -17.41765 -17.05980 -16.52170 -16.47404 -16.26831 -16.14540 -15.68305 -15.44361 -15.18006 -15.05408 -14.72184 -14.25464 -14.06019 -13.84250 -13.64462 -13.45393 -13.19568 -13.16097 -12.97303 -12.92648 -12.74702 -12.43153 -12.38264 -12.35016 -12.13663 -12.10505 -11.88367 -11.75485 -11.46015 -11.00232 -10.87025 -10.30278 -10.25937 -10.13989 -9.98006 -9.31684 -8.44628 -5.92678 1.19454 1.40445 1.42383 1.52722 1.54763 1.84015 2.09525 2.29825 2.77302 3.09304 3.22345 3.34314 3.47305 3.72178 3.73907 4.03543 4.07353 4.17343 4.17576 4.25488 4.27165 4.30800 4.34164 4.42315 4.45567 4.46901 4.56037 4.61431 4.73925 4.81278 4.90199 4.98870 5.00962 5.04121 5.12276 5.36443 5.41940 5.44224 5.66357 5.70235 5.87240 5.98494 6.08620 6.12779 6.51794 6.63974 7.16061 7.20560 7.60096 8.16918 8.72468 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.001917 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.725009 B =14605.478880 C =14928.352967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.045 3.955 6 C 0.511 3.489 7 O -0.572 6.572 8 N -0.706 5.706 9 C 0.149 3.851 10 H 0.090 0.910 11 C -0.123 4.123 12 C 0.045 3.955 13 N -0.509 5.509 14 C 0.051 3.949 15 C 0.442 3.558 16 O -0.617 6.617 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.063 3.937 27 H 0.085 0.915 28 C -0.132 4.132 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.416 0.584 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.807 -8.238 -5.661 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.009 3.991 4 O -0.317 6.317 5 C -0.034 4.034 6 C 0.298 3.702 7 O -0.450 6.450 8 N -0.361 5.361 9 C 0.043 3.957 10 H 0.108 0.892 11 C -0.162 4.162 12 C -0.082 4.082 13 N -0.234 5.234 14 C -0.080 4.080 15 C 0.229 3.771 16 O -0.502 6.502 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.046 4.046 27 H 0.103 0.897 28 C -0.190 4.190 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.254 0.746 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.887 -9.733 -4.591 26.199 hybrid contribution 0.616 1.252 -1.074 1.761 sum -23.271 -8.481 -5.665 25.408 Atomic orbital electron populations 1.24057 0.95028 1.03504 0.97810 1.22799 0.96344 0.98150 1.02347 1.21787 0.88317 0.96573 0.92437 1.88001 1.45528 1.36447 1.61734 1.22356 0.92681 0.89500 0.98843 1.20898 0.82585 0.83215 0.83459 1.90731 1.73804 1.28870 1.51570 1.45894 1.30543 1.17749 1.41895 1.21660 0.86722 0.96311 0.91023 0.89207 1.22852 0.95276 0.96883 1.01216 1.23182 1.00160 0.93390 0.91484 1.64359 1.17202 1.06089 1.35759 1.21925 0.91874 0.91607 1.02604 1.20802 0.91224 0.83066 0.81993 1.90494 1.65283 1.38916 1.55555 1.41905 1.06974 1.09490 1.62923 1.19596 0.83258 0.96012 1.47374 0.90550 1.25966 1.04538 0.94247 0.96339 1.69657 1.37471 1.00637 1.48284 0.85034 0.77245 0.77569 0.78761 1.19842 1.19452 1.19935 1.22676 0.87699 0.95938 0.98266 0.89747 1.21726 1.01813 1.02472 0.92992 0.86893 0.86891 0.87778 0.90648 0.90635 0.86856 0.87327 0.74589 0.91038 0.90437 0.92993 0.92257 0.90547 0.87169 0.76994 0.91365 0.93033 0.92187 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 14.31 67.78 0.97 -0.65 16 2 C -0.18 -2.42 9.89 25.65 0.25 -2.16 16 3 C 0.08 1.02 6.35 71.24 0.45 1.48 16 4 O -0.40 -7.78 9.86 -129.94 -1.28 -9.06 16 5 C 0.05 0.58 6.42 71.24 0.46 1.04 16 6 C 0.51 10.49 7.90 87.66 0.69 11.19 16 7 O -0.57 -18.11 16.18 16.00 0.26 -17.85 16 8 N -0.71 -11.41 5.07 -438.35 -2.22 -13.63 16 9 C 0.15 3.24 2.95 45.87 0.14 3.37 16 10 H 0.09 2.24 7.15 -2.39 -0.02 2.23 16 11 C -0.12 -3.19 6.80 31.89 0.22 -2.97 16 12 C 0.05 1.38 5.94 86.74 0.52 1.90 16 13 N -0.51 -15.56 4.54 -862.05 -3.91 -19.47 16 14 C 0.05 1.66 5.19 85.56 0.44 2.10 16 15 C 0.44 20.60 7.61 87.66 0.67 21.26 16 16 O -0.62 -34.02 14.64 -3.06 -0.04 -34.07 16 17 N -0.57 -28.95 5.29 -306.98 -1.62 -30.57 16 18 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 19 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 20 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 21 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 22 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 C 0.06 1.35 2.83 45.06 0.13 1.48 16 27 H 0.08 1.38 7.25 -2.39 -0.02 1.36 16 28 C -0.13 -2.75 9.32 71.98 0.67 -2.08 16 29 H 0.11 0.73 7.90 -2.91 -0.02 0.71 16 30 H 0.11 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.10 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.08 0.60 7.86 -2.39 -0.02 0.58 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.42 3.89 8.31 -92.71 -0.77 3.12 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.08 1.92 8.05 -2.39 -0.02 1.90 16 39 H 0.05 1.40 7.81 -2.39 -0.02 1.38 16 40 H 0.06 2.29 7.10 -2.39 -0.02 2.27 16 41 H 0.08 2.07 7.83 -2.39 -0.02 2.05 16 42 H 0.11 3.11 8.08 -2.39 -0.02 3.09 16 43 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 44 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -78.11 393.99 -0.16 -78.27 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.52 Total: 32.30 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 6.88 Total: 17.86 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -7.47 Total: -112.26 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -1.07 Total: -60.98 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -78.11 -0.16 -78.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489255957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.419 kcal (2) G-P(sol) polarization free energy of solvation -78.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds