Wall clock time and date at job start Tue Mar 31 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.98964 * 2 1 4 4 C 1.54951 * 111.12314 * 235.80161 * 2 1 3 5 5 O 1.43648 * 105.13464 * 205.63260 * 4 2 1 6 6 C 1.43243 * 109.96941 * 24.43256 * 5 4 2 7 7 H 1.08995 * 109.82569 * 238.68089 * 6 5 4 8 8 C 1.50700 * 109.82675 * 117.80089 * 6 5 4 9 9 O 1.21282 * 120.00269 * 356.44792 * 8 6 5 10 10 N 1.34776 * 119.99606 * 176.45696 * 8 6 5 11 11 C 1.46506 * 119.99793 * 179.97438 * 10 8 6 12 12 H 1.09001 * 112.84889 * 23.79965 * 11 10 8 13 13 C 1.53781 * 113.61316 * 154.99695 * 11 10 8 14 14 C 1.53771 * 87.08338 * 89.11368 * 13 11 10 15 15 H 1.09002 * 113.61580 * 270.80146 * 14 13 11 16 16 N 1.46901 * 113.61554 * 139.97796 * 14 13 11 17 17 C 1.46904 * 110.99695 * 156.52933 * 16 14 13 18 18 C 1.50706 * 109.46676 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00284 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99730 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99910 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99959 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00053 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99930 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47057 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.47389 * 300.00155 * 25 23 21 28 28 H 1.48504 * 109.47102 * 60.00503 * 25 23 21 29 29 C 1.53784 * 87.17388 * 25.38822 * 14 13 11 30 30 C 1.54382 * 107.58682 * 358.28464 * 6 5 4 31 31 H 1.08997 * 109.47206 * 182.74301 * 1 2 3 32 32 H 1.08995 * 109.47138 * 302.74172 * 1 2 3 33 33 H 1.09001 * 109.47220 * 62.74269 * 1 2 3 34 34 H 1.09003 * 110.30649 * 86.72171 * 4 2 1 35 35 H 1.08996 * 110.39342 * 324.59642 * 4 2 1 36 36 H 0.97000 * 120.00256 * 359.97438 * 10 8 6 37 37 H 1.09007 * 113.61557 * 334.56032 * 13 11 10 38 38 H 1.08998 * 113.68732 * 203.67764 * 13 11 10 39 39 H 1.00902 * 110.99893 * 32.58242 * 16 14 13 40 40 H 1.08996 * 109.47230 * 60.00720 * 17 16 14 41 41 H 1.09002 * 109.47146 * 299.99952 * 17 16 14 42 42 H 0.96996 * 119.99887 * 0.02562 * 20 18 17 43 43 H 0.97001 * 119.99781 * 359.97438 * 24 23 21 44 44 H 1.08998 * 113.60968 * 89.15720 * 29 14 13 45 45 H 1.08996 * 113.61514 * 220.05943 * 29 14 13 46 46 H 1.09004 * 110.84577 * 96.83844 * 30 6 5 47 47 H 1.09003 * 110.84435 * 220.45069 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9204 1.0177 0.0000 4 6 2.0884 -0.8124 -1.1955 5 8 3.3898 -1.2520 -0.7750 6 6 3.4510 -1.3014 0.6552 7 1 4.2475 -0.6496 1.0139 8 6 3.7057 -2.7162 1.1073 9 8 3.7603 -3.6128 0.2924 10 7 3.8726 -2.9853 2.4174 11 6 4.1196 -4.3608 2.8570 12 1 4.5482 -4.9852 2.0730 13 6 4.8682 -4.4541 4.1971 14 6 3.4902 -4.4272 4.8789 15 1 3.1349 -3.4220 5.1059 16 7 3.3816 -5.3425 6.0228 17 6 2.3257 -4.9072 6.9468 18 6 2.2446 -5.8679 8.1051 19 8 2.9930 -6.8210 8.1561 20 7 1.3411 -5.6674 9.0849 21 6 1.2669 -6.5416 10.1384 22 1 1.9328 -7.3908 10.1833 23 6 0.3351 -6.3351 11.1482 24 7 -0.4754 -5.3022 11.0933 25 14 0.2345 -7.5259 12.5840 26 1 -0.8323 -7.0857 13.5184 27 1 -0.0803 -8.8861 12.0779 28 1 1.5367 -7.5523 13.2974 29 6 2.9173 -5.0027 3.5729 30 6 2.0897 -0.8152 1.1975 31 1 -0.3633 -1.0265 0.0492 32 1 -0.3633 0.5558 0.8643 33 1 -0.3634 0.4707 -0.9136 34 1 2.1702 -0.1784 -2.0784 35 1 1.4485 -1.6697 -1.4041 36 1 3.8291 -2.2682 3.0692 37 1 5.4813 -3.5799 4.4166 38 1 5.4050 -5.3927 4.3344 39 1 4.2660 -5.4310 6.5003 40 1 1.3700 -4.8875 6.4232 41 1 2.5571 -3.9090 7.3186 42 1 0.7429 -4.9049 9.0443 43 1 -0.4229 -4.6837 10.3479 44 1 2.9192 -6.0921 3.5381 45 1 1.9576 -4.5707 3.2894 46 1 1.4405 -1.6596 1.4292 47 1 2.2255 -0.1777 2.0711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490912012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:36 Heat of formation + Delta-G solvation = -126.569499 kcal Electronic energy + Delta-G solvation = -27107.870093 eV Core-core repulsion = 23096.842556 eV Total energy + Delta-G solvation = -4011.027537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69182 -40.62243 -40.09825 -38.92998 -36.50539 -35.55027 -34.59409 -33.76354 -33.07445 -31.12174 -28.37839 -27.34643 -26.73709 -26.12367 -25.05349 -23.70066 -21.90882 -21.56893 -21.34356 -20.37936 -19.97754 -18.66223 -18.19265 -17.82070 -17.16432 -16.87643 -16.77830 -16.60391 -16.00452 -15.93748 -15.74700 -15.55130 -15.29064 -14.91561 -14.62886 -14.51969 -14.28052 -13.92598 -13.48655 -13.43171 -13.29866 -13.27624 -13.13552 -12.79900 -12.72914 -12.60957 -12.25987 -11.99740 -11.91888 -11.89491 -11.65475 -11.57907 -11.52762 -11.52049 -11.26776 -10.42235 -10.38632 -10.12864 -10.11242 -9.37266 -8.92864 -6.06826 1.47828 1.52517 1.54851 1.82769 1.90201 2.00659 2.40622 2.83423 2.86523 3.16491 3.33680 3.38836 3.51273 3.54422 3.65389 3.75026 3.91308 3.98559 4.08105 4.09133 4.12634 4.31674 4.35626 4.48083 4.50974 4.52176 4.63766 4.73774 4.78841 4.80216 4.82509 4.87377 4.95727 5.01230 5.03112 5.08801 5.20072 5.35568 5.49401 5.60990 5.82562 5.95330 6.06304 6.36854 6.49436 6.58159 6.74498 7.18197 7.44163 7.92622 8.55015 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.001975 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.455084 B =14172.401511 C =15295.735011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 H 0.110 0.890 4 C 0.042 3.958 5 O -0.384 6.384 6 C 0.065 3.935 7 H 0.136 0.864 8 C 0.498 3.502 9 O -0.578 6.578 10 N -0.693 5.693 11 C 0.124 3.876 12 H 0.085 0.915 13 C -0.131 4.131 14 C 0.062 3.938 15 H 0.094 0.906 16 N -0.673 5.673 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.587 5.587 21 C -0.410 4.410 22 H 0.072 0.928 23 C -0.043 4.043 24 N -0.916 5.916 25 Si 1.133 2.867 26 H -0.272 1.272 27 H -0.275 1.275 28 H -0.272 1.272 29 C -0.138 4.138 30 C -0.139 4.139 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.418 0.582 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.348 0.652 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.385 0.615 43 H 0.260 0.740 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 18.028 -20.349 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.128 0.872 4 C -0.034 4.034 5 O -0.303 6.303 6 C 0.004 3.996 7 H 0.154 0.846 8 C 0.285 3.715 9 O -0.457 6.457 10 N -0.346 5.346 11 C 0.017 3.983 12 H 0.103 0.897 13 C -0.170 4.170 14 C -0.047 4.047 15 H 0.112 0.888 16 N -0.306 5.306 17 C -0.066 4.066 18 C 0.228 3.772 19 O -0.505 6.505 20 N -0.226 5.226 21 C -0.540 4.540 22 H 0.090 0.910 23 C -0.241 4.241 24 N -0.556 5.556 25 Si 0.953 3.047 26 H -0.197 1.197 27 H -0.200 1.200 28 H -0.197 1.197 29 C -0.178 4.178 30 C -0.176 4.176 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.255 0.745 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.168 0.832 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.219 0.781 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.110 15.943 -19.949 25.866 hybrid contribution 0.656 1.208 -0.774 1.577 sum 4.766 17.151 -20.722 27.318 Atomic orbital electron populations 1.21685 0.92766 1.02141 1.03361 1.22869 0.97552 1.00377 0.92734 0.87230 1.23744 0.83145 0.97589 0.98915 1.88493 1.33616 1.88576 1.19587 1.22870 1.02092 0.91719 0.82915 0.84623 1.21693 0.75281 0.92164 0.82348 1.90703 1.51453 1.49260 1.54263 1.45519 1.72300 1.09499 1.07308 1.21610 0.97073 0.83578 0.96003 0.89701 1.23483 0.95967 1.04499 0.93020 1.23226 0.97413 0.94793 0.89295 0.88811 1.60179 1.09601 1.50360 1.10485 1.21593 0.98307 0.95335 0.91382 1.20962 0.82665 0.88503 0.85107 1.90501 1.45765 1.34475 1.79714 1.41998 1.33564 1.26110 1.20932 1.20514 1.22010 1.08932 1.02519 0.90979 1.27809 0.91790 1.01214 1.03269 1.70974 1.37847 1.13760 1.32979 0.82636 0.77278 0.72843 0.71969 1.19697 1.20003 1.19737 1.23540 0.97947 1.01132 0.95195 1.23270 0.92876 1.00940 1.00553 0.93296 0.90832 0.91238 0.87826 0.93346 0.74469 0.88457 0.88346 0.83223 0.88193 0.90881 0.78079 0.92937 0.90077 0.91610 0.90949 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.31 71.98 0.67 -0.34 16 2 C -0.12 -0.94 3.69 -9.34 -0.03 -0.98 16 3 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 4 C 0.04 0.59 7.26 72.65 0.53 1.12 16 5 O -0.38 -7.88 10.56 -130.19 -1.38 -9.26 16 6 C 0.06 0.91 3.95 30.32 0.12 1.03 16 7 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 8 C 0.50 10.28 7.03 87.66 0.62 10.90 16 9 O -0.58 -18.52 16.12 15.75 0.25 -18.26 16 10 N -0.69 -10.21 5.24 -439.75 -2.30 -12.51 16 11 C 0.12 2.34 4.33 45.57 0.20 2.53 16 12 H 0.08 2.02 7.46 -2.39 -0.02 2.00 16 13 C -0.13 -2.13 7.42 31.12 0.23 -1.90 16 14 C 0.06 1.22 3.99 45.44 0.18 1.40 16 15 H 0.09 1.42 7.88 -2.39 -0.02 1.40 16 16 N -0.67 -19.54 6.18 -492.84 -3.04 -22.58 16 17 C 0.07 2.11 6.02 85.56 0.52 2.62 16 18 C 0.44 20.47 7.82 87.66 0.69 21.16 16 19 O -0.62 -34.19 15.78 -3.05 -0.05 -34.24 16 20 N -0.59 -29.39 5.28 -306.98 -1.62 -31.01 16 21 C -0.41 -23.35 9.68 84.04 0.81 -22.54 16 22 H 0.07 4.42 7.16 -2.91 -0.02 4.40 16 23 C -0.04 -2.30 5.50 84.93 0.47 -1.83 16 24 N -0.92 -50.58 13.68 21.66 0.30 -50.29 16 25 Si 1.13 48.23 29.92 68.60 2.05 50.28 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 29 C -0.14 -3.00 7.69 31.18 0.24 -2.76 16 30 C -0.14 -1.17 6.00 31.85 0.19 -0.98 16 31 H 0.05 0.47 8.10 -2.39 -0.02 0.45 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 0.80 8.03 -2.39 -0.02 0.78 16 36 H 0.42 3.13 8.70 -92.71 -0.81 2.33 16 37 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.35 10.53 8.26 -89.69 -0.74 9.79 16 40 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 42 H 0.39 17.53 6.73 -92.71 -0.62 16.90 16 43 H 0.26 13.78 6.78 -92.71 -0.63 13.15 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 0.82 7.70 -2.39 -0.02 0.80 16 47 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -81.50 388.27 -1.40 -82.90 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -1.03 Total: 35.52 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 5.42 Total: 9.44 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -6.67 Total: -116.39 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -1.17 Total: -61.75 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.05 Total: 50.28 kcal Total: -81.50 -1.40 -82.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490912012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.671 kcal (2) G-P(sol) polarization free energy of solvation -81.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds