Wall clock time and date at job start Tue Mar 31 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.43540 * 2 1 4 4 C 1.54102 * 110.48736 * 122.54306 * 2 1 3 5 5 O 1.43746 * 107.28889 * 116.64417 * 4 2 1 6 6 C 1.44378 * 106.97761 * 26.51830 * 5 4 2 7 7 H 1.08995 * 110.62098 * 78.43196 * 6 5 4 8 8 C 1.50703 * 110.61798 * 201.27776 * 6 5 4 9 9 O 1.21281 * 119.99889 * 7.63236 * 8 6 5 10 10 N 1.34769 * 119.99958 * 187.63651 * 8 6 5 11 11 C 1.46502 * 120.00113 * 185.03862 * 10 8 6 12 12 C 1.46504 * 120.00288 * 5.03205 * 10 8 6 13 13 C 1.53930 * 113.73586 * 218.77075 * 12 10 8 14 14 N 1.48187 * 86.10269 * 221.95395 * 13 12 10 15 15 C 1.46904 * 111.07250 * 137.51660 * 14 13 12 16 16 C 1.50701 * 109.47091 * 70.56923 * 15 14 13 17 17 O 1.21294 * 119.99675 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00058 * 180.02562 * 16 15 14 19 19 C 1.37105 * 119.99582 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00351 * 359.97438 * 19 18 16 21 21 C 1.38958 * 119.99415 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99954 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99405 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47244 * 60.00484 * 23 21 19 25 25 H 1.48504 * 109.46797 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47360 * 299.99791 * 23 21 19 27 27 C 1.47961 * 90.79423 * 24.60079 * 14 13 12 28 28 C 1.54809 * 110.48570 * 237.30977 * 2 1 3 29 29 H 1.09006 * 109.47029 * 298.90595 * 1 2 3 30 30 H 1.09001 * 109.47100 * 178.91073 * 1 2 3 31 31 H 1.08999 * 109.47078 * 58.90551 * 1 2 3 32 32 H 1.08995 * 109.88167 * 236.07077 * 4 2 1 33 33 H 1.08998 * 109.87980 * 357.07228 * 4 2 1 34 34 H 1.08999 * 109.47102 * 86.62431 * 11 10 8 35 35 H 1.09002 * 109.47246 * 206.62346 * 11 10 8 36 36 H 1.09007 * 109.46816 * 326.62218 * 11 10 8 37 37 H 1.09000 * 112.93548 * 350.33248 * 12 10 8 38 38 H 1.09000 * 113.76095 * 336.23949 * 13 12 10 39 39 H 1.09001 * 113.76274 * 107.60393 * 13 12 10 40 40 H 1.08995 * 109.47337 * 190.56712 * 15 14 13 41 41 H 1.09003 * 109.47279 * 310.57323 * 15 14 13 42 42 H 0.96991 * 120.00034 * 0.02562 * 18 16 15 43 43 H 0.97000 * 119.99105 * 180.02562 * 22 21 19 44 44 H 1.09005 * 113.75831 * 221.08304 * 27 14 13 45 45 H 1.09003 * 113.86237 * 89.73321 * 27 14 13 46 46 H 1.08997 * 110.91038 * 338.64145 * 28 2 1 47 47 H 1.09003 * 110.90077 * 102.24606 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0694 -0.7765 1.2169 5 8 2.7955 -1.9101 0.7127 6 6 3.2660 -1.5569 -0.6058 7 1 4.1455 -0.9164 -0.5407 8 6 3.5710 -2.7946 -1.4096 9 8 3.2793 -3.8880 -0.9735 10 7 4.1680 -2.6864 -2.6130 11 6 4.3647 -3.8776 -3.4429 12 6 4.6201 -1.3776 -3.0915 13 6 4.3913 -1.1555 -4.5974 14 7 5.7416 -0.5451 -4.6095 15 6 6.5079 -0.9814 -5.7845 16 6 5.9269 -0.3529 -7.0248 17 8 4.9684 0.3853 -6.9386 18 7 6.4716 -0.6120 -8.2300 19 6 5.9432 -0.0398 -9.3583 20 1 5.0904 0.6181 -9.2815 21 6 6.5053 -0.3065 -10.6009 22 7 7.5428 -1.1076 -10.6944 23 14 5.7849 0.4725 -12.1383 24 1 5.8547 1.9513 -12.0230 25 1 6.5600 0.0320 -13.3260 26 1 4.3681 0.0538 -12.2881 27 6 6.1252 -1.3200 -3.4088 28 6 2.0718 -0.7832 -1.2205 29 1 -0.3633 0.4968 0.8997 30 1 -0.3633 -1.0275 -0.0195 31 1 -0.3633 0.5307 -0.8800 32 1 2.7351 -0.1387 1.7983 33 1 1.2402 -1.1119 1.8398 34 1 3.4733 -4.0518 -4.0455 35 1 5.2225 -3.7262 -4.0982 36 1 4.5448 -4.7409 -2.8022 37 1 4.2711 -0.5539 -2.4686 38 1 4.3217 -2.0792 -5.1719 39 1 3.5886 -0.4528 -4.8208 40 1 7.5479 -0.6741 -5.6746 41 1 6.4568 -2.0669 -5.8691 42 1 7.2374 -1.2032 -8.2991 43 1 7.9353 -1.2934 -11.5618 44 1 6.7052 -0.7485 -2.6841 45 1 6.5642 -2.2921 -3.6330 46 1 1.3197 -1.4714 -1.6062 47 1 2.4103 -0.1017 -2.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499707026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:13 Heat of formation + Delta-G solvation = -69.217325 kcal Electronic energy + Delta-G solvation = -28243.738780 eV Core-core repulsion = 24235.198219 eV Total energy + Delta-G solvation = -4008.540561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10305 -39.94777 -38.63902 -37.73368 -34.92433 -33.93275 -33.83377 -31.34467 -31.07444 -29.92687 -27.36759 -26.62143 -26.17287 -25.56628 -23.98301 -23.31516 -20.93677 -20.52405 -19.37591 -18.98036 -18.08686 -17.82638 -16.96332 -16.30149 -16.18630 -15.90500 -15.49548 -15.25454 -15.04626 -14.64597 -14.42999 -14.20852 -14.04967 -13.77747 -13.41806 -13.12027 -13.02992 -12.92170 -12.74648 -12.67866 -12.33804 -12.12299 -12.01346 -11.82038 -11.56829 -11.51791 -11.33674 -11.21532 -11.14742 -11.07162 -10.76306 -10.48342 -10.26482 -10.14180 -9.74940 -9.54860 -8.85278 -8.81639 -8.33188 -8.02290 -6.46895 -3.88013 2.31435 2.51380 3.16120 3.22566 3.26480 3.55225 3.81783 3.88551 4.02893 4.14778 4.23772 4.32073 4.39375 4.54755 4.61368 4.70058 4.79175 4.84475 5.04895 5.08644 5.11293 5.19657 5.24964 5.28561 5.34704 5.36387 5.37753 5.50692 5.53288 5.58755 5.61572 5.66457 5.67831 5.68265 5.82820 5.85807 6.06453 6.13285 6.19019 6.45249 6.47253 7.00526 7.12096 7.49953 7.93881 7.99543 8.54997 9.12194 9.47781 9.98913 10.70653 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.002430 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.887582 B =11520.682179 C =12158.057946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.089 0.911 4 C 0.047 3.953 5 O -0.349 6.349 6 C 0.059 3.941 7 H 0.096 0.904 8 C 0.523 3.477 9 O -0.521 6.521 10 N -0.602 5.602 11 C 0.083 3.917 12 C 0.098 3.902 13 C 0.014 3.986 14 N -0.448 5.448 15 C 0.013 3.987 16 C 0.442 3.558 17 O -0.580 6.580 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.015 4.015 28 C -0.141 4.141 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.392 0.608 43 H 0.273 0.727 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 -0.887 19.728 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.107 0.893 4 C -0.030 4.030 5 O -0.267 6.267 6 C -0.002 4.002 7 H 0.113 0.887 8 C 0.310 3.690 9 O -0.395 6.395 10 N -0.336 5.336 11 C -0.059 4.059 12 C -0.006 4.006 13 C -0.115 4.115 14 N -0.171 5.171 15 C -0.119 4.119 16 C 0.227 3.773 17 O -0.464 6.464 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.145 4.145 28 C -0.178 4.178 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.148 -0.552 19.934 21.184 hybrid contribution 0.373 -0.616 -1.239 1.433 sum -6.775 -1.168 18.695 19.919 Atomic orbital electron populations 1.21833 0.93577 1.02456 1.02284 1.22547 0.97491 1.00205 0.94228 0.89251 1.23358 0.95908 0.87767 0.95935 1.88997 1.71989 1.37041 1.28686 1.22993 0.98548 0.93981 0.84709 0.88694 1.20170 0.77459 0.90299 0.81120 1.90715 1.51368 1.28167 1.69295 1.47827 1.59164 1.08779 1.17858 1.21658 1.01757 0.87434 0.95059 1.23500 0.95088 0.84965 0.97055 1.24289 0.95012 0.99499 0.92733 1.68413 1.02390 1.44894 1.01394 1.22448 0.99480 0.98118 0.91887 1.19632 0.87019 0.86591 0.84028 1.90520 1.29351 1.40422 1.86075 1.41861 1.29914 1.43043 1.05096 1.19644 1.13920 1.25804 0.83635 0.87957 1.25270 0.96187 0.97033 0.99380 1.69602 1.22377 1.36022 1.26224 0.85916 0.78830 0.79421 0.80056 1.19851 1.20944 1.19893 1.24528 0.96374 0.98286 0.95316 1.23253 0.96984 0.99232 0.98378 0.92182 0.92138 0.91957 0.91987 0.89343 0.92191 0.90903 0.90340 0.85931 0.90714 0.87965 0.88904 0.92810 0.77488 0.91760 0.88611 0.90705 0.89639 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.92 37.16 0.33 -0.58 16 2 C -0.13 -0.88 3.65 -89.09 -0.32 -1.21 16 3 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.05 0.38 7.37 37.73 0.28 0.66 16 5 O -0.35 -4.25 10.81 -54.17 -0.59 -4.84 16 6 C 0.06 0.61 2.72 -26.83 -0.07 0.54 16 7 H 0.10 0.81 7.24 -51.93 -0.38 0.43 16 8 C 0.52 6.75 7.04 -10.99 -0.08 6.67 16 9 O -0.52 -8.75 16.19 -13.38 -0.22 -8.97 16 10 N -0.60 -6.72 3.09 -175.28 -0.54 -7.26 16 11 C 0.08 0.88 9.09 59.85 0.54 1.42 16 12 C 0.10 1.03 4.01 -69.63 -0.28 0.75 16 13 C 0.01 0.19 6.19 -2.64 -0.02 0.18 16 14 N -0.45 -6.63 5.95 -239.69 -1.43 -8.05 16 15 C 0.01 0.21 5.31 -4.97 -0.03 0.18 16 16 C 0.44 9.96 7.59 -10.99 -0.08 9.88 16 17 O -0.58 -14.98 15.13 5.55 0.08 -14.89 16 18 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 19 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 21 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 23 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C -0.01 -0.16 7.47 -2.76 -0.02 -0.18 16 28 C -0.14 -1.20 5.70 -24.72 -0.14 -1.34 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.65 7.69 -51.93 -0.40 0.25 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.69 6.22 -51.93 -0.32 0.37 16 36 H 0.08 0.87 7.46 -51.93 -0.39 0.48 16 37 H 0.12 1.10 4.82 -51.93 -0.25 0.85 16 38 H 0.07 1.04 6.40 -51.93 -0.33 0.70 16 39 H 0.10 1.54 8.10 -51.93 -0.42 1.12 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.05 0.78 7.70 -51.93 -0.40 0.38 16 42 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.76 6.55 -51.93 -0.34 0.42 16 46 H 0.08 0.82 7.78 -51.93 -0.40 0.41 16 47 H 0.09 0.70 6.96 -51.93 -0.36 0.34 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -33.68 376.03 -8.71 -42.39 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.21 Total: 8.34 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.13 Total: 9.17 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -1.30 Total: -52.50 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.72 Total: -28.70 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.68 -8.71 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499707026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.827 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds