Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.43540 * 2 1 4 4 C 1.54102 * 110.48736 * 122.54306 * 2 1 3 5 5 O 1.43746 * 107.28889 * 116.64417 * 4 2 1 6 6 C 1.44378 * 106.97761 * 26.51830 * 5 4 2 7 7 H 1.08995 * 110.62098 * 78.43196 * 6 5 4 8 8 C 1.50703 * 110.61798 * 201.27776 * 6 5 4 9 9 O 1.21281 * 119.99889 * 7.63236 * 8 6 5 10 10 N 1.34769 * 119.99958 * 187.63651 * 8 6 5 11 11 C 1.46502 * 120.00113 * 185.03862 * 10 8 6 12 12 C 1.46504 * 120.00288 * 5.03205 * 10 8 6 13 13 C 1.53930 * 113.73586 * 218.77075 * 12 10 8 14 14 N 1.48187 * 86.10269 * 221.95395 * 13 12 10 15 15 C 1.46904 * 111.07250 * 137.51660 * 14 13 12 16 16 C 1.50701 * 109.47091 * 70.56923 * 15 14 13 17 17 O 1.21294 * 119.99675 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00058 * 180.02562 * 16 15 14 19 19 C 1.37105 * 119.99582 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00351 * 359.97438 * 19 18 16 21 21 C 1.38958 * 119.99415 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99954 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99405 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47244 * 60.00484 * 23 21 19 25 25 H 1.48504 * 109.46797 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47360 * 299.99791 * 23 21 19 27 27 C 1.47961 * 90.79423 * 24.60079 * 14 13 12 28 28 C 1.54809 * 110.48570 * 237.30977 * 2 1 3 29 29 H 1.09006 * 109.47029 * 298.90595 * 1 2 3 30 30 H 1.09001 * 109.47100 * 178.91073 * 1 2 3 31 31 H 1.08999 * 109.47078 * 58.90551 * 1 2 3 32 32 H 1.08995 * 109.88167 * 236.07077 * 4 2 1 33 33 H 1.08998 * 109.87980 * 357.07228 * 4 2 1 34 34 H 1.08999 * 109.47102 * 86.62431 * 11 10 8 35 35 H 1.09002 * 109.47246 * 206.62346 * 11 10 8 36 36 H 1.09007 * 109.46816 * 326.62218 * 11 10 8 37 37 H 1.09000 * 112.93548 * 350.33248 * 12 10 8 38 38 H 1.09000 * 113.76095 * 336.23949 * 13 12 10 39 39 H 1.09001 * 113.76274 * 107.60393 * 13 12 10 40 40 H 1.08995 * 109.47337 * 190.56712 * 15 14 13 41 41 H 1.09003 * 109.47279 * 310.57323 * 15 14 13 42 42 H 0.96991 * 120.00034 * 0.02562 * 18 16 15 43 43 H 0.97000 * 119.99105 * 180.02562 * 22 21 19 44 44 H 1.09005 * 113.75831 * 221.08304 * 27 14 13 45 45 H 1.09003 * 113.86237 * 89.73321 * 27 14 13 46 46 H 1.08997 * 110.91038 * 338.64145 * 28 2 1 47 47 H 1.09003 * 110.90077 * 102.24606 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0694 -0.7765 1.2169 5 8 2.7955 -1.9101 0.7127 6 6 3.2660 -1.5569 -0.6058 7 1 4.1455 -0.9164 -0.5407 8 6 3.5710 -2.7946 -1.4096 9 8 3.2793 -3.8880 -0.9735 10 7 4.1680 -2.6864 -2.6130 11 6 4.3647 -3.8776 -3.4429 12 6 4.6201 -1.3776 -3.0915 13 6 4.3913 -1.1555 -4.5974 14 7 5.7416 -0.5451 -4.6095 15 6 6.5079 -0.9814 -5.7845 16 6 5.9269 -0.3529 -7.0248 17 8 4.9684 0.3853 -6.9386 18 7 6.4716 -0.6120 -8.2300 19 6 5.9432 -0.0398 -9.3583 20 1 5.0904 0.6181 -9.2815 21 6 6.5053 -0.3065 -10.6009 22 7 7.5428 -1.1076 -10.6944 23 14 5.7849 0.4725 -12.1383 24 1 5.8547 1.9513 -12.0230 25 1 6.5600 0.0320 -13.3260 26 1 4.3681 0.0538 -12.2881 27 6 6.1252 -1.3200 -3.4088 28 6 2.0718 -0.7832 -1.2205 29 1 -0.3633 0.4968 0.8997 30 1 -0.3633 -1.0275 -0.0195 31 1 -0.3633 0.5307 -0.8800 32 1 2.7351 -0.1387 1.7983 33 1 1.2402 -1.1119 1.8398 34 1 3.4733 -4.0518 -4.0455 35 1 5.2225 -3.7262 -4.0982 36 1 4.5448 -4.7409 -2.8022 37 1 4.2711 -0.5539 -2.4686 38 1 4.3217 -2.0792 -5.1719 39 1 3.5886 -0.4528 -4.8208 40 1 7.5479 -0.6741 -5.6746 41 1 6.4568 -2.0669 -5.8691 42 1 7.2374 -1.2032 -8.2991 43 1 7.9353 -1.2934 -11.5618 44 1 6.7052 -0.7485 -2.6841 45 1 6.5642 -2.2921 -3.6330 46 1 1.3197 -1.4714 -1.6062 47 1 2.4103 -0.1017 -2.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499707026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = -94.852122 kcal Electronic energy + Delta-G solvation = -28244.850388 eV Core-core repulsion = 24235.198219 eV Total energy + Delta-G solvation = -4009.652169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06214 -40.93846 -39.80122 -39.23333 -36.12717 -35.73377 -34.50704 -33.28818 -31.84324 -31.21657 -28.23158 -27.41391 -27.18509 -27.00002 -25.31617 -24.22629 -21.71326 -21.49980 -20.90935 -20.01318 -19.80160 -18.84334 -17.84731 -17.82391 -17.17635 -16.84090 -16.61431 -16.39763 -16.27000 -15.99603 -15.61476 -15.58475 -15.06727 -14.96612 -14.66164 -14.15724 -13.89824 -13.75140 -13.64513 -13.58208 -13.50522 -13.43643 -13.21871 -13.05986 -12.89251 -12.75312 -12.43198 -12.19739 -12.14944 -12.12134 -11.95273 -11.88297 -11.64181 -11.48276 -10.97230 -10.61435 -10.32445 -10.01065 -9.81809 -9.76707 -8.46296 -5.94665 1.34614 1.39699 1.42019 1.52318 1.61643 2.06151 2.28829 2.70228 2.95904 3.19725 3.21661 3.28963 3.43370 3.53263 3.66443 3.80162 3.92166 4.03914 4.05851 4.19168 4.23531 4.25598 4.37758 4.43890 4.49864 4.55113 4.56390 4.61679 4.68582 4.74592 4.80584 4.82860 4.86598 4.90394 4.96171 5.04455 5.14864 5.25764 5.32524 5.34859 5.41583 5.77573 5.83811 6.04512 6.18845 6.60463 6.97096 7.13321 7.57070 8.12321 8.70821 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.002430 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.887582 B =11520.682179 C =12158.057946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 H 0.110 0.890 4 C 0.041 3.959 5 O -0.384 6.384 6 C 0.058 3.942 7 H 0.121 0.879 8 C 0.519 3.481 9 O -0.568 6.568 10 N -0.595 5.595 11 C 0.080 3.920 12 C 0.116 3.884 13 C 0.008 3.992 14 N -0.469 5.469 15 C 0.025 3.975 16 C 0.441 3.559 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.006 4.006 28 C -0.139 4.139 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 0.039 20.509 21.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 H 0.129 0.871 4 C -0.035 4.035 5 O -0.303 6.303 6 C -0.002 4.002 7 H 0.138 0.862 8 C 0.307 3.693 9 O -0.446 6.446 10 N -0.328 5.328 11 C -0.062 4.062 12 C 0.012 3.988 13 C -0.122 4.122 14 N -0.192 5.192 15 C -0.107 4.107 16 C 0.228 3.772 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.814 3.186 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.135 4.135 28 C -0.177 4.177 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.130 0.870 41 H 0.095 0.905 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.137 0.863 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.493 0.379 20.719 21.716 hybrid contribution 0.143 -0.908 -1.429 1.699 sum -6.351 -0.529 19.290 20.315 Atomic orbital electron populations 1.21835 0.93303 1.01834 1.03146 1.22568 0.97707 1.00783 0.92763 0.87135 1.23573 0.96243 0.87191 0.96491 1.88965 1.72702 1.39177 1.29432 1.23136 1.00078 0.92923 0.84092 0.86173 1.20723 0.76576 0.90590 0.81389 1.90689 1.53385 1.30081 1.70464 1.47851 1.58374 1.09165 1.17423 1.21716 1.02303 0.87204 0.95022 1.23430 0.95082 0.85060 0.95260 1.24259 0.94204 0.98701 0.95025 1.68407 1.02738 1.46249 1.01816 1.22344 1.00013 0.98842 0.89504 1.20718 0.85973 0.85333 0.85138 1.90493 1.30922 1.41859 1.86893 1.41944 1.30376 1.43556 1.05375 1.19605 1.14257 1.26884 0.85380 0.90275 1.26009 0.96384 0.97242 1.01618 1.69663 1.22922 1.36488 1.27083 0.85025 0.78211 0.78498 0.76854 1.19714 1.19648 1.19717 1.24616 0.96540 0.98729 0.93623 1.23263 0.96003 0.99068 0.99334 0.90758 0.93499 0.91693 0.90163 0.89076 0.92388 0.89448 0.91008 0.83940 0.91209 0.89949 0.87040 0.90480 0.77053 0.91349 0.86287 0.89519 0.91343 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.92 71.98 0.64 -0.97 16 2 C -0.12 -1.42 3.65 -9.80 -0.04 -1.46 16 3 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 4 C 0.04 0.60 7.37 72.35 0.53 1.13 16 5 O -0.38 -9.02 10.81 -130.87 -1.41 -10.43 16 6 C 0.06 1.12 2.72 30.53 0.08 1.20 16 7 H 0.12 1.67 7.24 -2.39 -0.02 1.65 16 8 C 0.52 13.04 7.04 87.66 0.62 13.65 16 9 O -0.57 -19.39 16.19 15.07 0.24 -19.14 16 10 N -0.60 -12.47 3.09 -826.85 -2.56 -15.03 16 11 C 0.08 1.62 9.09 127.77 1.16 2.78 16 12 C 0.12 2.16 4.01 46.55 0.19 2.34 16 13 C 0.01 0.20 6.19 86.36 0.53 0.74 16 14 N -0.47 -12.83 5.95 -912.23 -5.42 -18.25 16 15 C 0.02 0.77 5.31 85.56 0.45 1.22 16 16 C 0.44 19.82 7.59 87.66 0.67 20.48 16 17 O -0.62 -32.22 15.13 -3.07 -0.05 -32.27 16 18 N -0.57 -28.43 5.29 -306.99 -1.62 -30.06 16 19 C -0.33 -18.35 9.68 84.04 0.81 -17.54 16 20 H 0.08 4.66 7.16 -2.92 -0.02 4.64 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -48.80 13.05 21.67 0.28 -48.51 16 23 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 C -0.01 -0.11 7.47 86.41 0.65 0.54 16 28 C -0.14 -2.15 5.70 31.89 0.18 -1.97 16 29 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.05 0.65 8.13 -2.39 -0.02 0.63 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.23 7.69 -2.39 -0.02 1.21 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.50 6.22 -2.39 -0.01 1.48 16 36 H 0.07 1.57 7.46 -2.38 -0.02 1.56 16 37 H 0.14 2.11 4.82 -2.39 -0.01 2.10 16 38 H 0.07 1.88 6.40 -2.39 -0.02 1.86 16 39 H 0.08 2.48 8.10 -2.39 -0.02 2.46 16 40 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.08 2.05 7.70 -2.39 -0.02 2.03 16 42 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 43 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 44 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.09 1.43 6.55 -2.39 -0.02 1.42 16 46 H 0.07 1.29 7.78 -2.39 -0.02 1.28 16 47 H 0.11 1.35 6.96 -2.39 -0.02 1.33 16 Total: -1.00 -74.50 376.03 -1.30 -75.80 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.26 Total: 31.77 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.95 Total: 21.95 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -9.32 Total: -111.85 kcal Atomic # 8 Polarization: -60.63 SS G_CDS: -1.22 Total: -61.84 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -74.50 -1.30 -75.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499707026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.055 kcal (2) G-P(sol) polarization free energy of solvation -74.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds