Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.99880 * 2 1 4 4 O 1.43747 * 109.87771 * 121.08469 * 2 1 3 5 5 C 1.44383 * 106.97632 * 145.93667 * 4 2 1 6 6 C 1.54993 * 103.48867 * 319.93919 * 5 4 2 7 7 C 1.54104 * 109.87941 * 238.91300 * 2 1 3 8 8 H 1.09002 * 110.48526 * 119.73993 * 7 2 1 9 9 C 1.50703 * 110.48453 * 357.22844 * 7 2 1 10 10 O 1.21284 * 119.99887 * 274.38281 * 9 7 2 11 11 N 1.34775 * 119.99768 * 94.39037 * 9 7 2 12 12 C 1.46494 * 120.00271 * 354.94510 * 11 9 7 13 13 C 1.46505 * 119.99424 * 174.94395 * 11 9 7 14 14 C 1.53516 * 114.16641 * 119.99841 * 13 11 9 15 15 N 1.47487 * 87.93199 * 87.62377 * 14 13 11 16 16 C 1.46900 * 111.00078 * 138.70269 * 15 14 13 17 17 C 1.50699 * 109.46766 * 170.00164 * 16 15 14 18 18 O 1.21284 * 120.00172 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99636 * 180.02562 * 17 16 15 20 20 C 1.37106 * 120.00039 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99426 * 359.97438 * 20 19 17 22 22 C 1.38940 * 119.99976 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00041 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99853 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47360 * 269.99784 * 24 22 20 26 26 H 1.48499 * 109.47400 * 29.99845 * 24 22 20 27 27 H 1.48506 * 109.47000 * 149.99617 * 24 22 20 28 28 C 1.47478 * 87.83388 * 27.00739 * 15 14 13 29 29 H 1.08998 * 109.47680 * 176.47707 * 1 2 3 30 30 H 1.09003 * 109.47226 * 296.48398 * 1 2 3 31 31 H 1.09004 * 109.46600 * 56.47528 * 1 2 3 32 32 H 1.08990 * 110.61993 * 78.44011 * 5 4 2 33 33 H 1.09002 * 110.61502 * 201.28752 * 5 4 2 34 34 H 1.09003 * 110.90889 * 278.82814 * 6 5 4 35 35 H 1.08998 * 110.90695 * 155.22235 * 6 5 4 36 36 H 1.08994 * 109.47043 * 275.47788 * 12 11 9 37 37 H 1.09000 * 109.47502 * 35.48063 * 12 11 9 38 38 H 1.09008 * 109.46888 * 155.47805 * 12 11 9 39 39 H 1.08993 * 113.25882 * 347.05245 * 13 11 9 40 40 H 1.08999 * 113.47582 * 332.85663 * 14 13 11 41 41 H 1.09001 * 113.53017 * 202.39708 * 14 13 11 42 42 H 1.08997 * 109.46868 * 49.99820 * 16 15 14 43 43 H 1.08996 * 109.47035 * 290.00220 * 16 15 14 44 44 H 0.97006 * 119.99899 * 359.97438 * 19 17 16 45 45 H 0.97001 * 120.00024 * 0.02562 * 23 22 20 46 46 H 1.09000 * 113.47413 * 87.75879 * 28 15 14 47 47 H 1.08998 * 113.47859 * 218.22501 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6980 1.1577 5 6 3.2379 -1.3642 0.7648 6 6 2.9195 -1.8915 -0.6575 7 6 2.0540 -0.7483 -1.2411 8 1 2.6600 -0.0853 -1.8586 9 6 0.9072 -1.3104 -2.0412 10 8 0.4415 -2.3931 -1.7552 11 7 0.3994 -0.6100 -3.0746 12 6 0.8863 0.7436 -3.3518 13 6 -0.6395 -1.2024 -3.9208 14 6 -1.9579 -0.4161 -3.9407 15 7 -1.4022 0.3834 -5.0485 16 6 -2.4173 0.6285 -6.0817 17 6 -1.8962 1.6423 -7.0674 18 8 -0.7885 2.1146 -6.9231 19 7 -2.6616 2.0250 -8.1087 20 6 -2.1877 2.9478 -9.0052 21 1 -1.2013 3.3683 -8.8767 22 6 -2.9765 3.3418 -10.0790 23 7 -4.1766 2.8296 -10.2355 24 14 -2.3312 4.5996 -11.3000 25 1 -2.7018 5.9644 -10.8472 26 1 -0.8527 4.4915 -11.3873 27 1 -2.9261 4.3427 -12.6362 28 6 -0.5657 -0.7807 -5.3950 29 1 -0.3634 -1.0257 -0.0631 30 1 -0.3634 0.4583 0.9198 31 1 -0.3633 0.5676 -0.8568 32 1 4.0684 -0.6591 0.7357 33 1 3.4597 -2.1892 1.4418 34 1 2.3538 -2.8220 -0.6098 35 1 3.8331 -2.0225 -1.2373 36 1 0.3479 1.4580 -2.7292 37 1 1.9520 0.7990 -3.1298 38 1 0.7213 0.9809 -4.4029 39 1 -0.7616 -2.2743 -3.7656 40 1 -2.1326 0.1617 -3.0332 41 1 -2.8194 -1.0183 -4.2294 42 1 -3.3260 1.0088 -5.6152 43 1 -2.6387 -0.3035 -6.6018 44 1 -3.5477 1.6474 -8.2239 45 1 -4.5118 2.1768 -9.6013 46 1 -1.0551 -1.4809 -6.0719 47 1 0.4394 -0.5119 -5.7198 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499760743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = -58.086248 kcal Electronic energy + Delta-G solvation = -28510.322511 eV Core-core repulsion = 24502.264630 eV Total energy + Delta-G solvation = -4008.057881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32773 -40.20362 -38.47855 -37.82753 -35.04520 -34.26219 -32.75009 -31.77774 -31.19220 -30.02257 -27.14184 -26.78652 -26.03940 -25.22250 -23.77175 -22.58469 -22.48121 -19.99556 -19.73064 -18.54923 -17.96858 -17.74750 -16.80436 -16.60216 -16.33660 -15.98061 -15.79170 -15.39358 -15.24378 -14.91956 -14.38630 -14.10600 -13.73351 -13.61283 -13.47266 -13.17993 -13.10986 -12.69588 -12.62043 -12.48287 -12.25709 -12.18418 -11.98935 -11.56996 -11.49152 -11.30611 -11.26896 -11.13664 -11.06463 -10.97599 -10.81221 -10.24374 -10.19445 -9.89083 -9.78690 -9.56287 -8.93194 -8.75646 -8.30948 -8.05508 -6.77545 -3.90940 2.34393 2.71252 3.28654 3.32835 3.50243 3.51848 3.80623 3.88969 4.05266 4.24472 4.27501 4.33948 4.48146 4.65004 4.71747 4.77174 4.84980 4.89201 5.03933 5.10122 5.16242 5.23453 5.26225 5.27948 5.31273 5.39711 5.47323 5.49534 5.51847 5.57600 5.60846 5.70243 5.71224 5.79240 5.81730 5.96494 5.97992 6.08530 6.34886 6.44808 6.56234 6.96568 7.25178 7.78072 7.96936 8.05618 8.57968 8.78117 9.45402 9.86170 10.65950 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.002303 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.655024 B =12157.491762 C =12477.948650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 H 0.078 0.922 4 O -0.370 6.370 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.147 4.147 8 H 0.107 0.893 9 C 0.533 3.467 10 O -0.540 6.540 11 N -0.586 5.586 12 C 0.071 3.929 13 C 0.116 3.884 14 C -0.017 4.017 15 N -0.437 5.437 16 C 0.007 3.993 17 C 0.450 3.550 18 O -0.571 6.571 19 N -0.579 5.579 20 C -0.381 4.381 21 H 0.099 0.901 22 C -0.010 4.010 23 N -0.902 5.902 24 Si 1.093 2.907 25 H -0.284 1.284 26 H -0.284 1.284 27 H -0.281 1.281 28 C -0.006 4.006 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.375 0.625 45 H 0.261 0.739 46 H 0.080 0.920 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.068 -8.939 17.978 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.036 3.964 3 H 0.096 0.904 4 O -0.289 6.289 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.169 4.169 8 H 0.125 0.875 9 C 0.321 3.679 10 O -0.417 6.417 11 N -0.317 5.317 12 C -0.071 4.071 13 C 0.011 3.989 14 C -0.147 4.147 15 N -0.159 5.159 16 C -0.125 4.125 17 C 0.235 3.765 18 O -0.453 6.453 19 N -0.217 5.217 20 C -0.510 4.510 21 H 0.117 0.883 22 C -0.213 4.213 23 N -0.542 5.542 24 Si 0.919 3.081 25 H -0.211 1.211 26 H -0.210 1.210 27 H -0.207 1.207 28 C -0.136 4.136 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.207 0.793 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.384 -7.633 17.114 21.424 hybrid contribution -0.632 -1.609 0.734 1.878 sum 9.752 -9.241 17.849 22.340 Atomic orbital electron populations 1.22163 0.93383 1.03975 1.02925 1.22543 0.95629 0.95121 0.83138 0.90409 1.88914 1.39712 1.67689 1.32590 1.23542 0.87627 0.96462 0.95177 1.23170 0.99788 0.99056 0.96064 1.22900 0.96581 0.99456 0.97919 0.87481 1.20114 0.83504 0.84630 0.79607 1.90676 1.61329 1.21916 1.67827 1.47437 1.38491 1.16663 1.29123 1.22053 0.98031 0.81414 1.05645 1.22045 0.87969 0.98155 0.90717 1.24339 0.96786 0.96100 0.97510 1.68853 1.13315 1.28433 1.05311 1.22515 0.96032 0.99330 0.94636 1.19560 0.87047 0.86372 0.83504 1.90505 1.20720 1.58565 1.75530 1.41967 1.16400 1.39446 1.23927 1.20544 1.04461 1.19928 1.06070 0.88337 1.26500 0.94532 1.01512 0.98724 1.70876 1.16963 1.28446 1.37876 0.83095 0.75164 0.74594 0.75204 1.21098 1.20955 1.20655 1.24301 1.01441 0.92536 0.95306 0.90797 0.91411 0.90836 0.91991 0.88644 0.88507 0.89795 0.92339 0.91956 0.87477 0.86970 0.89461 0.90446 0.89437 0.92204 0.79258 0.92772 0.90214 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 8.43 37.16 0.31 -1.42 16 2 C 0.09 0.90 4.05 -26.16 -0.11 0.80 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 O -0.37 -4.03 11.19 -35.23 -0.39 -4.42 16 5 C 0.05 0.38 7.72 38.21 0.29 0.67 16 6 C -0.14 -1.21 6.65 -24.73 -0.16 -1.37 16 7 C -0.15 -1.36 2.82 -90.24 -0.25 -1.62 16 8 H 0.11 0.80 6.00 -51.93 -0.31 0.48 16 9 C 0.53 6.31 4.63 -10.99 -0.05 6.26 16 10 O -0.54 -8.00 14.38 5.55 0.08 -7.92 16 11 N -0.59 -6.70 2.85 -173.62 -0.49 -7.19 16 12 C 0.07 0.77 9.16 59.84 0.55 1.31 16 13 C 0.12 1.37 4.65 -67.71 -0.31 1.06 16 14 C -0.02 -0.20 7.32 -7.54 -0.06 -0.26 16 15 N -0.44 -6.52 4.28 -246.09 -1.05 -7.58 16 16 C 0.01 0.12 5.30 -4.98 -0.03 0.09 16 17 C 0.45 10.30 7.85 -10.98 -0.09 10.21 16 18 O -0.57 -15.05 16.01 5.55 0.09 -14.96 16 19 N -0.58 -14.30 5.28 -10.96 -0.06 -14.36 16 20 C -0.38 -10.57 9.68 -14.93 -0.14 -10.71 16 21 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 22 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 23 N -0.90 -25.10 13.68 55.50 0.76 -24.34 16 24 Si 1.09 24.10 29.92 -169.99 -5.09 19.01 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 C -0.01 -0.08 6.72 -7.55 -0.05 -0.13 16 29 H 0.07 0.92 6.57 -51.93 -0.34 0.58 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.74 6.63 -51.93 -0.34 0.39 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.02 6.91 -51.93 -0.36 0.66 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.62 7.44 -51.93 -0.39 0.23 16 37 H 0.06 0.53 5.94 -51.93 -0.31 0.22 16 38 H 0.11 1.47 5.50 -51.92 -0.29 1.19 16 39 H 0.11 1.33 7.33 -51.93 -0.38 0.95 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 42 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 44 H 0.37 8.55 6.73 -40.82 -0.27 8.28 16 45 H 0.26 6.97 6.77 -40.82 -0.28 6.69 16 46 H 0.08 0.97 7.42 -51.93 -0.39 0.58 16 47 H 0.09 1.33 7.34 -51.93 -0.38 0.95 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -34.08 369.25 -7.74 -41.82 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.95 Total: 9.85 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.19 Total: 4.51 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.85 Total: -53.46 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.23 Total: -27.30 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.09 Total: 19.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.08 -7.74 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499760743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.270 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds