Wall clock time and date at job start Tue Mar 31 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.99880 * 2 1 4 4 O 1.43747 * 109.87771 * 121.08469 * 2 1 3 5 5 C 1.44383 * 106.97632 * 145.93667 * 4 2 1 6 6 C 1.54993 * 103.48867 * 319.93919 * 5 4 2 7 7 C 1.54104 * 109.87941 * 238.91300 * 2 1 3 8 8 H 1.09002 * 110.48526 * 119.73993 * 7 2 1 9 9 C 1.50703 * 110.48453 * 357.22844 * 7 2 1 10 10 O 1.21284 * 119.99887 * 274.38281 * 9 7 2 11 11 N 1.34775 * 119.99768 * 94.39037 * 9 7 2 12 12 C 1.46494 * 120.00271 * 354.94510 * 11 9 7 13 13 C 1.46505 * 119.99424 * 174.94395 * 11 9 7 14 14 C 1.53516 * 114.16641 * 119.99841 * 13 11 9 15 15 N 1.47487 * 87.93199 * 87.62377 * 14 13 11 16 16 C 1.46900 * 111.00078 * 138.70269 * 15 14 13 17 17 C 1.50699 * 109.46766 * 170.00164 * 16 15 14 18 18 O 1.21284 * 120.00172 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99636 * 180.02562 * 17 16 15 20 20 C 1.37106 * 120.00039 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99426 * 359.97438 * 20 19 17 22 22 C 1.38940 * 119.99976 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00041 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99853 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47360 * 269.99784 * 24 22 20 26 26 H 1.48499 * 109.47400 * 29.99845 * 24 22 20 27 27 H 1.48506 * 109.47000 * 149.99617 * 24 22 20 28 28 C 1.47478 * 87.83388 * 27.00739 * 15 14 13 29 29 H 1.08998 * 109.47680 * 176.47707 * 1 2 3 30 30 H 1.09003 * 109.47226 * 296.48398 * 1 2 3 31 31 H 1.09004 * 109.46600 * 56.47528 * 1 2 3 32 32 H 1.08990 * 110.61993 * 78.44011 * 5 4 2 33 33 H 1.09002 * 110.61502 * 201.28752 * 5 4 2 34 34 H 1.09003 * 110.90889 * 278.82814 * 6 5 4 35 35 H 1.08998 * 110.90695 * 155.22235 * 6 5 4 36 36 H 1.08994 * 109.47043 * 275.47788 * 12 11 9 37 37 H 1.09000 * 109.47502 * 35.48063 * 12 11 9 38 38 H 1.09008 * 109.46888 * 155.47805 * 12 11 9 39 39 H 1.08993 * 113.25882 * 347.05245 * 13 11 9 40 40 H 1.08999 * 113.47582 * 332.85663 * 14 13 11 41 41 H 1.09001 * 113.53017 * 202.39708 * 14 13 11 42 42 H 1.08997 * 109.46868 * 49.99820 * 16 15 14 43 43 H 1.08996 * 109.47035 * 290.00220 * 16 15 14 44 44 H 0.97006 * 119.99899 * 359.97438 * 19 17 16 45 45 H 0.97001 * 120.00024 * 0.02562 * 23 22 20 46 46 H 1.09000 * 113.47413 * 87.75879 * 28 15 14 47 47 H 1.08998 * 113.47859 * 218.22501 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6980 1.1577 5 6 3.2379 -1.3642 0.7648 6 6 2.9195 -1.8915 -0.6575 7 6 2.0540 -0.7483 -1.2411 8 1 2.6600 -0.0853 -1.8586 9 6 0.9072 -1.3104 -2.0412 10 8 0.4415 -2.3931 -1.7552 11 7 0.3994 -0.6100 -3.0746 12 6 0.8863 0.7436 -3.3518 13 6 -0.6395 -1.2024 -3.9208 14 6 -1.9579 -0.4161 -3.9407 15 7 -1.4022 0.3834 -5.0485 16 6 -2.4173 0.6285 -6.0817 17 6 -1.8962 1.6423 -7.0674 18 8 -0.7885 2.1146 -6.9231 19 7 -2.6616 2.0250 -8.1087 20 6 -2.1877 2.9478 -9.0052 21 1 -1.2013 3.3683 -8.8767 22 6 -2.9765 3.3418 -10.0790 23 7 -4.1766 2.8296 -10.2355 24 14 -2.3312 4.5996 -11.3000 25 1 -2.7018 5.9644 -10.8472 26 1 -0.8527 4.4915 -11.3873 27 1 -2.9261 4.3427 -12.6362 28 6 -0.5657 -0.7807 -5.3950 29 1 -0.3634 -1.0257 -0.0631 30 1 -0.3634 0.4583 0.9198 31 1 -0.3633 0.5676 -0.8568 32 1 4.0684 -0.6591 0.7357 33 1 3.4597 -2.1892 1.4418 34 1 2.3538 -2.8220 -0.6098 35 1 3.8331 -2.0225 -1.2373 36 1 0.3479 1.4580 -2.7292 37 1 1.9520 0.7990 -3.1298 38 1 0.7213 0.9809 -4.4029 39 1 -0.7616 -2.2743 -3.7656 40 1 -2.1326 0.1617 -3.0332 41 1 -2.8194 -1.0183 -4.2294 42 1 -3.3260 1.0088 -5.6152 43 1 -2.6387 -0.3035 -6.6018 44 1 -3.5477 1.6474 -8.2239 45 1 -4.5118 2.1768 -9.6013 46 1 -1.0551 -1.4809 -6.0719 47 1 0.4394 -0.5119 -5.7198 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499760743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:49 Heat of formation + Delta-G solvation = -83.754458 kcal Electronic energy + Delta-G solvation = -28511.435568 eV Core-core repulsion = 24502.264630 eV Total energy + Delta-G solvation = -4009.170938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.27254 -41.18746 -39.91074 -39.08655 -36.37411 -35.94948 -33.58046 -33.13043 -32.47917 -31.31294 -28.15610 -27.62752 -27.13446 -26.69157 -25.23344 -23.52861 -23.16302 -21.49165 -20.88593 -19.95885 -19.46853 -18.66908 -18.12944 -17.60718 -17.42545 -17.04421 -16.71311 -16.61757 -16.21439 -16.10169 -15.93611 -15.45134 -15.24583 -14.91649 -14.53625 -14.39094 -13.90544 -13.76439 -13.57777 -13.40283 -13.34101 -13.20160 -13.09525 -12.89781 -12.81247 -12.62232 -12.22638 -12.17710 -12.01954 -11.96815 -11.94276 -11.86772 -11.79103 -11.49797 -11.02293 -10.60241 -10.42349 -10.08783 -9.80985 -9.69185 -8.91357 -6.05177 1.43856 1.52663 1.54851 1.81467 1.82333 2.03445 2.39576 2.72194 2.83654 3.16758 3.24991 3.26828 3.41363 3.51688 3.70330 3.76991 3.96077 4.04982 4.12185 4.13111 4.25610 4.28584 4.30991 4.33939 4.40602 4.41976 4.49460 4.52259 4.61586 4.66825 4.73883 4.78447 4.82842 4.90397 4.92576 5.10042 5.11991 5.18308 5.23826 5.50759 5.60189 5.85891 5.89446 5.97999 6.34343 6.59455 6.77249 7.05587 7.46690 7.96049 8.56553 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.002303 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.655024 B =12157.491762 C =12477.948650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 H 0.100 0.900 4 O -0.395 6.395 5 C 0.047 3.953 6 C -0.141 4.141 7 C -0.146 4.146 8 H 0.131 0.869 9 C 0.533 3.467 10 O -0.574 6.574 11 N -0.585 5.585 12 C 0.076 3.924 13 C 0.122 3.878 14 C -0.007 4.007 15 N -0.459 5.459 16 C 0.020 3.980 17 C 0.449 3.551 18 O -0.608 6.608 19 N -0.592 5.592 20 C -0.406 4.406 21 H 0.072 0.928 22 C -0.044 4.044 23 N -0.920 5.920 24 Si 1.134 2.866 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.274 1.274 28 C -0.005 4.005 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.383 0.617 45 H 0.259 0.741 46 H 0.093 0.907 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 -8.889 18.664 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.117 0.883 4 O -0.315 6.315 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.167 4.167 8 H 0.149 0.851 9 C 0.323 3.677 10 O -0.454 6.454 11 N -0.316 5.316 12 C -0.066 4.066 13 C 0.017 3.983 14 C -0.137 4.137 15 N -0.182 5.182 16 C -0.112 4.112 17 C 0.237 3.763 18 O -0.493 6.493 19 N -0.232 5.232 20 C -0.535 4.535 21 H 0.091 0.909 22 C -0.242 4.242 23 N -0.559 5.559 24 Si 0.955 3.045 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.199 1.199 28 C -0.135 4.135 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.217 0.783 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.028 -7.596 17.824 22.293 hybrid contribution -0.796 -1.683 0.610 1.959 sum 10.232 -9.279 18.433 23.034 Atomic orbital electron populations 1.22102 0.94427 1.02290 1.03181 1.22650 0.94892 0.96099 0.82927 0.88262 1.88885 1.41101 1.68181 1.33352 1.23739 0.87238 0.97182 0.94762 1.23165 1.00170 0.97617 0.96988 1.22986 0.95832 1.00079 0.97776 0.85134 1.20553 0.83709 0.84083 0.79405 1.90661 1.62489 1.23467 1.68737 1.47506 1.38287 1.16815 1.28968 1.22013 0.99784 0.81038 1.03795 1.21970 0.88226 0.98275 0.89868 1.24360 0.97414 0.95641 0.96275 1.68841 1.13563 1.30083 1.05684 1.22409 0.96700 0.98290 0.93815 1.20720 0.86168 0.86132 0.83298 1.90479 1.22497 1.59952 1.76366 1.42040 1.17103 1.39644 1.24394 1.20505 1.03890 1.21455 1.07642 0.90943 1.27780 0.94132 1.02468 0.99859 1.70945 1.17540 1.29157 1.38301 0.82603 0.75113 0.73216 0.73603 1.19668 1.20216 1.19893 1.24325 1.00515 0.92190 0.96459 0.93342 0.91052 0.90660 0.89656 0.87758 0.91024 0.87561 0.91981 0.89331 0.90329 0.86801 0.89390 0.88240 0.87488 0.89680 0.78292 0.93000 0.88901 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.43 71.98 0.61 -2.63 16 2 C 0.09 1.60 4.05 30.97 0.13 1.73 16 3 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 4 O -0.40 -8.02 11.19 -148.98 -1.67 -9.69 16 5 C 0.05 0.63 7.72 72.66 0.56 1.19 16 6 C -0.14 -2.16 6.65 31.89 0.21 -1.94 16 7 C -0.15 -2.42 2.82 -10.55 -0.03 -2.45 16 8 H 0.13 1.52 6.00 -2.39 -0.01 1.50 16 9 C 0.53 12.08 4.63 87.66 0.41 12.48 16 10 O -0.57 -16.92 14.38 -3.04 -0.04 -16.96 16 11 N -0.59 -12.72 2.85 -821.60 -2.34 -15.06 16 12 C 0.08 1.54 9.16 127.77 1.17 2.71 16 13 C 0.12 2.74 4.65 45.45 0.21 2.95 16 14 C -0.01 -0.16 7.32 83.57 0.61 0.45 16 15 N -0.46 -13.12 4.28 -932.50 -3.99 -17.11 16 16 C 0.02 0.62 5.30 85.56 0.45 1.07 16 17 C 0.45 20.54 7.85 87.66 0.69 21.23 16 18 O -0.61 -32.59 16.01 -3.04 -0.05 -32.64 16 19 N -0.59 -29.44 5.28 -306.99 -1.62 -31.06 16 20 C -0.41 -22.87 9.68 84.04 0.81 -22.05 16 21 H 0.07 4.40 7.16 -2.91 -0.02 4.38 16 22 C -0.04 -2.40 5.50 84.92 0.47 -1.93 16 23 N -0.92 -50.98 13.68 21.66 0.30 -50.68 16 24 Si 1.13 48.19 29.92 68.60 2.05 50.24 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 C -0.01 -0.13 6.72 83.57 0.56 0.43 16 29 H 0.05 1.21 6.57 -2.39 -0.02 1.20 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.43 6.63 -2.38 -0.02 1.41 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.48 6.91 -2.39 -0.02 1.47 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.22 7.44 -2.39 -0.02 1.20 16 37 H 0.09 1.30 5.94 -2.39 -0.01 1.28 16 38 H 0.08 2.14 5.50 -2.38 -0.01 2.12 16 39 H 0.11 2.57 7.33 -2.39 -0.02 2.56 16 40 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.10 1.76 7.91 -2.39 -0.02 1.74 16 42 H 0.11 2.99 8.08 -2.39 -0.02 2.97 16 43 H 0.09 2.28 7.30 -2.39 -0.02 2.26 16 44 H 0.38 17.50 6.73 -92.70 -0.62 16.88 16 45 H 0.26 13.85 6.77 -92.71 -0.63 13.23 16 46 H 0.09 2.09 7.42 -2.39 -0.02 2.07 16 47 H 0.08 2.19 7.34 -2.39 -0.02 2.17 16 Total: -1.00 -75.12 369.25 0.01 -75.12 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: 0.52 Total: 34.62 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 6.86 Total: 13.24 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -7.66 Total: -113.92 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -1.76 Total: -59.29 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.05 Total: 50.24 kcal Total: -75.12 0.01 -75.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499760743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.639 kcal (2) G-P(sol) polarization free energy of solvation -75.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds