Wall clock time and date at job start Tue Mar 31 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47452 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47149 * 179.97438 * 11 10 9 13 13 C 1.33869 * 122.76745 * 269.71111 * 12 11 10 14 14 O 1.21230 * 125.39589 * 359.97438 * 13 12 11 15 15 C 1.51307 * 109.20948 * 179.84495 * 13 12 11 16 16 C 1.54230 * 103.55473 * 0.38464 * 15 13 12 17 17 C 1.33875 * 122.75447 * 90.00476 * 12 11 10 18 18 O 1.21218 * 125.40313 * 359.97438 * 17 12 11 19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 20 20 C 1.36941 * 120.00103 * 84.99785 * 19 2 1 21 21 H 1.08000 * 119.99734 * 0.02562 * 20 19 2 22 22 C 1.38812 * 119.99814 * 180.02562 * 20 19 2 23 23 N 1.31613 * 120.00446 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99795 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47005 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47173 * 119.99511 * 24 22 20 27 27 H 1.48497 * 109.46943 * 239.99759 * 24 22 20 28 28 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 1.09001 * 109.47289 * 299.99918 * 10 9 7 39 39 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 40 40 H 1.08998 * 109.47061 * 300.00668 * 11 10 9 41 41 H 1.09002 * 109.46668 * 60.00355 * 11 10 9 42 42 H 1.08996 * 110.79904 * 241.77872 * 15 13 12 43 43 H 1.09003 * 110.55212 * 118.87508 * 15 13 12 44 44 H 1.08999 * 110.60979 * 241.26176 * 16 15 13 45 45 H 1.09007 * 110.60622 * 118.29390 * 16 15 13 46 46 H 0.97003 * 120.00235 * 265.00555 * 19 2 1 47 47 H 0.96996 * 120.00501 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 6 7.4011 -1.9416 4.0704 11 6 7.9110 -2.6614 5.3205 12 7 9.3711 -2.5587 5.3818 13 6 10.1852 -3.4665 4.8292 14 8 9.8276 -4.4567 4.2280 15 6 11.6222 -3.0593 5.0711 16 6 11.4962 -1.7500 5.8764 17 6 10.0011 -1.5521 6.0000 18 8 9.4598 -0.6284 6.5683 19 7 2.0183 -0.6905 -1.1963 20 6 2.1490 -0.0072 -2.3758 21 1 1.8925 1.0408 -2.4241 22 6 2.6112 -0.6616 -3.5094 23 7 2.9242 -1.9386 -3.4505 24 14 2.7902 0.2706 -5.1183 25 1 2.3762 1.6830 -4.9207 26 1 4.2070 0.2269 -5.5607 27 1 1.9290 -0.3571 -6.1525 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.4258 -1.7353 3.1108 36 1 5.4421 -1.5889 4.8935 37 1 5.5874 -3.0996 3.9633 38 1 7.8357 -2.4019 3.1830 39 1 7.6896 -0.8914 4.1133 40 1 7.4764 -2.2009 6.2077 41 1 7.6225 -3.7117 5.2780 42 1 12.1380 -2.8811 4.1276 43 1 12.1425 -3.8195 5.6538 44 1 11.9493 -0.9205 5.3334 45 1 11.9514 -1.8597 6.8608 46 1 2.2489 -1.6317 -1.1529 47 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674196490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:46 Heat of formation + Delta-G solvation = -137.087243 kcal Electronic energy + Delta-G solvation = -26791.272606 eV Core-core repulsion = 22779.788985 eV Total energy + Delta-G solvation = -4011.483621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.85321 -40.79858 -39.65411 -38.20214 -37.07454 -36.00136 -35.71314 -34.16481 -33.06637 -31.11404 -29.80297 -27.97844 -27.10090 -25.87235 -24.42701 -23.29856 -23.10834 -21.79417 -21.01873 -20.48093 -19.30055 -18.54883 -18.02548 -17.55991 -17.54407 -17.08445 -16.88509 -16.69987 -15.96053 -15.77932 -15.39031 -15.34501 -15.27587 -14.98286 -14.90002 -14.65287 -14.44584 -14.13687 -13.75493 -13.58469 -13.38691 -13.26532 -13.06014 -12.87300 -12.86331 -12.64574 -12.27987 -12.22555 -12.12128 -12.11339 -11.92701 -11.65603 -11.63869 -11.61720 -11.08649 -11.03254 -10.96188 -10.79596 -10.10188 -8.99568 -7.94739 -5.21478 0.48702 1.43663 1.45195 1.49792 1.54363 1.63207 1.72452 2.23564 2.55148 3.22147 3.27887 3.39578 3.63233 3.63785 3.81757 3.82215 3.90420 3.99789 4.14166 4.19803 4.26304 4.33159 4.36814 4.37669 4.57688 4.61957 4.65547 4.76382 4.76583 4.88756 4.89584 4.91443 4.92929 5.01751 5.09631 5.12268 5.21880 5.38691 5.46733 5.52556 5.60751 5.81933 6.28596 6.30618 6.58526 6.73779 7.29517 7.34267 8.12498 8.33479 9.29125 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.002044 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.990292 B =13698.371359 C =14682.808117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.713 5.713 7 C 0.498 3.502 8 O -0.598 6.598 9 C -0.123 4.123 10 C -0.112 4.112 11 C 0.098 3.902 12 N -0.581 5.581 13 C 0.517 3.483 14 O -0.524 6.524 15 C -0.145 4.145 16 C -0.144 4.144 17 C 0.519 3.481 18 O -0.521 6.521 19 N -0.735 5.735 20 C -0.231 4.231 21 H 0.074 0.926 22 C -0.081 4.081 23 N -0.971 5.971 24 Si 0.967 3.033 25 H -0.266 1.266 26 H -0.298 1.298 27 H -0.292 1.292 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.032 0.968 35 H 0.419 0.581 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.138 0.862 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.151 0.849 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.852 -2.870 28.013 31.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.059 0.941 4 C -0.153 4.153 5 C 0.007 3.993 6 N -0.366 5.366 7 C 0.287 3.713 8 O -0.479 6.479 9 C -0.163 4.163 10 C -0.151 4.151 11 C -0.023 4.023 12 N -0.324 5.324 13 C 0.309 3.691 14 O -0.398 6.398 15 C -0.184 4.184 16 C -0.182 4.182 17 C 0.311 3.689 18 O -0.396 6.396 19 N -0.376 5.376 20 C -0.364 4.364 21 H 0.092 0.908 22 C -0.272 4.272 23 N -0.622 5.622 24 Si 0.797 3.203 25 H -0.190 1.190 26 H -0.226 1.226 27 H -0.220 1.220 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.257 0.743 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.156 0.844 43 H 0.168 0.832 44 H 0.157 0.843 45 H 0.169 0.831 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.873 -2.355 27.365 30.771 hybrid contribution -0.371 -0.129 -1.486 1.537 sum 13.502 -2.484 25.880 29.296 Atomic orbital electron populations 1.22255 0.96989 1.01084 1.00889 1.20481 0.93263 0.95153 0.85744 0.94109 1.21903 0.92347 1.02107 0.98906 1.21075 0.95460 0.95981 0.86769 1.45920 1.07549 1.56471 1.26630 1.21483 0.82207 0.79765 0.87881 1.90719 1.56774 1.48368 1.52077 1.21572 0.95405 1.03516 0.95847 1.21502 0.95400 1.00650 0.97563 1.21828 0.77841 1.03362 0.99287 1.46996 1.09702 1.25215 1.50456 1.21742 0.91268 0.80765 0.75325 1.90787 1.82436 1.27201 1.39388 1.22601 0.91228 0.99107 1.05436 1.22607 0.89587 0.99962 1.06094 1.21705 0.92835 0.79386 0.74993 1.90769 1.74762 1.32108 1.41931 1.42664 1.78379 1.10224 1.06333 1.19644 1.34220 0.94067 0.88430 0.90796 1.25512 1.03385 0.96911 1.01429 1.69811 1.53033 1.10207 1.29164 0.85155 0.76587 0.78329 0.80259 1.18991 1.22612 1.21956 0.90516 0.94897 0.93571 0.90901 0.87532 0.93451 0.94982 0.74334 0.84923 0.85710 0.93490 0.92831 0.87322 0.87808 0.84425 0.83242 0.84328 0.83145 0.79688 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.49 71.98 0.68 -4.34 16 2 C 0.16 6.13 2.89 44.99 0.13 6.26 16 3 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 4 C -0.11 -3.29 4.87 30.59 0.15 -3.14 16 5 C 0.13 4.49 5.56 86.38 0.48 4.97 16 6 N -0.71 -18.33 5.56 -463.06 -2.57 -20.91 16 7 C 0.50 14.62 7.83 87.66 0.69 15.30 16 8 O -0.60 -24.94 15.98 -3.03 -0.05 -24.98 16 9 C -0.12 -2.18 5.70 29.85 0.17 -2.01 16 10 C -0.11 -2.45 4.83 30.60 0.15 -2.31 16 11 C 0.10 1.58 5.56 86.38 0.48 2.06 16 12 N -0.58 -9.34 2.55 -756.67 -1.93 -11.28 16 13 C 0.52 8.10 8.07 87.99 0.71 8.81 16 14 O -0.52 -12.73 17.47 -2.87 -0.05 -12.78 16 15 C -0.14 -0.60 7.03 30.46 0.21 -0.38 16 16 C -0.14 -0.52 7.03 30.46 0.21 -0.30 16 17 C 0.52 7.66 8.08 87.99 0.71 8.37 16 18 O -0.52 -11.70 17.48 -2.84 -0.05 -11.75 16 19 N -0.74 -37.09 4.57 -322.95 -1.48 -38.56 16 20 C -0.23 -13.13 9.93 84.03 0.83 -12.30 16 21 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 22 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 23 N -0.97 -61.54 13.06 21.65 0.28 -61.25 16 24 Si 0.97 48.09 29.55 68.60 2.03 50.11 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 27 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 28 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.03 1.20 8.14 -2.38 -0.02 1.19 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.03 1.43 7.75 -2.39 -0.02 1.42 16 35 H 0.42 6.86 8.47 -92.71 -0.79 6.07 16 36 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 39 H 0.05 1.40 8.10 -2.39 -0.02 1.39 16 40 H 0.11 1.44 7.83 -2.39 -0.02 1.42 16 41 H 0.10 1.49 7.82 -2.39 -0.02 1.47 16 42 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.15 -0.27 8.14 -2.38 -0.02 -0.29 16 46 H 0.37 20.27 7.80 -92.71 -0.72 19.54 16 47 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -90.07 397.70 1.73 -88.34 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.53 Total: 26.39 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 6.08 Total: 16.66 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -5.70 Total: -132.00 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.15 Total: -49.51 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.11 kcal Total: -90.07 1.73 -88.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674196490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.743 kcal (2) G-P(sol) polarization free energy of solvation -90.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds