Wall clock time and date at job start Tue Mar 31 2020 05:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47213 * 2 1 4 4 O 1.42907 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.42898 * 113.99904 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47126 * 180.02562 * 5 4 3 7 7 O 1.21290 * 120.00065 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00355 * 180.02562 * 6 5 4 9 9 C 1.47862 * 126.91971 * 0.02562 * 8 6 5 10 10 C 1.56021 * 105.10914 * 181.93655 * 9 8 6 11 11 H 1.08994 * 116.26193 * 158.85080 * 10 9 8 12 12 C 1.57082 * 99.60044 * 32.80015 * 10 9 8 13 13 C 1.49273 * 126.93000 * 179.97438 * 8 6 5 14 14 H 1.09006 * 116.75735 * 16.46051 * 13 8 6 15 15 C 1.56015 * 104.12930 * 246.89183 * 13 8 6 16 16 N 1.49486 * 105.16866 * 288.12601 * 15 13 8 17 17 C 1.46900 * 110.47245 * 122.91139 * 16 15 13 18 18 C 1.50698 * 109.46963 * 183.73089 * 17 16 15 19 19 O 1.21292 * 120.00220 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99504 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99781 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00111 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00280 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99407 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00309 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47310 * 89.99915 * 25 23 21 27 27 H 1.48499 * 109.46922 * 210.00215 * 25 23 21 28 28 H 1.48504 * 109.47069 * 329.99927 * 25 23 21 29 29 H 1.08998 * 109.46871 * 299.99939 * 1 2 3 30 30 H 1.09004 * 109.46952 * 59.99527 * 1 2 3 31 31 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47309 * 239.99986 * 2 1 3 33 33 H 1.08995 * 109.47163 * 120.00283 * 2 1 3 34 34 H 1.08998 * 109.47152 * 60.00233 * 3 2 1 35 35 H 1.08995 * 109.47288 * 300.00207 * 3 2 1 36 36 H 1.09002 * 109.46889 * 60.00230 * 5 4 3 37 37 H 1.09002 * 109.47371 * 300.00584 * 5 4 3 38 38 H 1.08999 * 110.31958 * 63.02708 * 9 8 6 39 39 H 1.09001 * 110.39752 * 300.88252 * 9 8 6 40 40 H 1.09000 * 112.36242 * 191.74663 * 12 10 9 41 41 H 1.09004 * 112.35824 * 64.33763 * 12 10 9 42 42 H 1.08991 * 110.32194 * 47.69684 * 15 13 8 43 43 H 1.08996 * 110.32083 * 169.89941 * 15 13 8 44 44 H 1.08997 * 109.46950 * 303.73365 * 17 16 15 45 45 H 1.09004 * 109.46811 * 63.73012 * 17 16 15 46 46 H 0.96995 * 120.00087 * 359.97438 * 20 18 17 47 47 H 0.97004 * 119.99577 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0503 2.7479 0.0001 6 6 5.5525 2.6289 0.0001 7 8 6.0742 1.5339 0.0011 8 7 6.3166 3.7392 0.0002 9 6 5.8463 5.1410 0.0008 10 6 7.1441 6.0055 -0.0503 11 1 7.0288 7.0278 -0.4101 12 6 8.0562 5.0581 -0.9094 13 6 7.8080 3.8016 0.0008 14 1 8.3375 2.8895 -0.2746 15 6 8.1631 4.4112 1.3924 16 7 7.7629 5.8487 1.3034 17 6 6.8014 6.1808 2.3632 18 6 6.3441 7.6072 2.1974 19 8 6.7762 8.2806 1.2859 20 7 5.4548 8.1345 3.0622 21 6 5.0383 9.4319 2.9112 22 1 5.4231 10.0316 2.0996 23 6 4.1212 9.9754 3.8023 24 7 3.6526 9.2455 4.7896 25 14 3.5543 11.7434 3.5970 26 1 2.3533 11.7800 2.7245 27 1 3.2179 12.3128 4.9266 28 1 4.6412 12.5428 2.9768 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.7283 3.2893 0.8896 37 1 3.7290 3.2884 -0.8903 38 1 5.2866 5.3522 0.9120 39 1 5.2280 5.3347 -0.8758 40 1 9.0999 5.3725 -0.9063 41 1 7.6741 4.9199 -1.9209 42 1 7.6089 3.9024 2.1810 43 1 9.2353 4.3388 1.5749 44 1 5.9421 5.5136 2.2962 45 1 7.2781 6.0628 3.3363 46 1 5.1089 7.5958 3.7909 47 1 3.0126 9.6251 5.4120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692357712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:03 Heat of formation + Delta-G solvation = -70.961807 kcal Electronic energy + Delta-G solvation = -28398.375831 eV Core-core repulsion = 24389.759624 eV Total energy + Delta-G solvation = -4008.616207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24734 -39.13694 -38.04770 -37.49230 -34.24231 -33.93693 -33.64017 -31.55009 -31.07865 -29.73156 -28.39275 -26.60697 -25.87585 -24.90296 -24.08366 -21.87009 -21.42452 -20.64120 -19.37226 -18.71551 -17.90261 -17.57439 -16.90606 -16.63458 -16.29673 -16.15444 -15.54408 -15.26848 -14.94297 -14.59461 -14.22710 -14.04539 -13.90478 -13.60569 -13.35716 -13.02517 -12.74854 -12.53149 -12.39713 -12.34643 -12.25976 -12.06894 -11.80772 -11.62320 -11.45534 -11.39541 -11.28430 -11.18905 -11.15689 -11.06224 -10.92410 -10.44866 -10.28930 -9.92324 -9.86834 -9.56792 -8.78164 -8.46029 -8.09222 -8.00960 -6.49109 -3.90291 2.45726 2.50419 3.11941 3.21888 3.27203 3.57717 3.79173 3.88546 4.14896 4.28974 4.46449 4.56095 4.65906 4.66695 4.76426 4.92404 4.95005 4.98012 5.01907 5.04027 5.15105 5.18497 5.21064 5.26690 5.37593 5.42248 5.43926 5.60443 5.69243 5.72520 5.75587 5.83599 5.83954 5.85735 5.91800 5.99026 6.09582 6.17798 6.33124 6.83539 6.88894 7.08176 7.39995 7.48089 7.97727 8.05673 8.52532 9.09981 9.45394 9.96114 10.68338 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.003382 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.791539 B = 8277.718519 C =10607.906148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.058 3.942 4 O -0.366 6.366 5 C 0.049 3.951 6 C 0.534 3.466 7 O -0.525 6.525 8 N -0.620 5.620 9 C 0.053 3.947 10 C 0.070 3.930 11 H 0.155 0.845 12 C -0.138 4.138 13 C 0.113 3.887 14 H 0.126 0.874 15 C 0.019 3.981 16 N -0.484 5.484 17 C 0.027 3.973 18 C 0.443 3.557 19 O -0.580 6.580 20 N -0.561 5.561 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.091 0.909 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 -13.768 -8.566 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.018 4.018 4 O -0.284 6.284 5 C -0.031 4.031 6 C 0.322 3.678 7 O -0.401 6.401 8 N -0.357 5.357 9 C -0.070 4.070 10 C -0.038 4.038 11 H 0.173 0.827 12 C -0.176 4.176 13 C 0.010 3.990 14 H 0.144 0.856 15 C -0.109 4.109 16 N -0.208 5.208 17 C -0.105 4.105 18 C 0.228 3.772 19 O -0.465 6.465 20 N -0.197 5.197 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.454 -13.754 -8.912 16.395 hybrid contribution -1.644 0.359 0.587 1.782 sum -2.098 -13.395 -8.325 15.910 Atomic orbital electron populations 1.21701 0.94628 1.02264 1.02130 1.21441 0.95637 0.95363 1.03564 1.22656 0.80381 0.98292 1.00487 1.87972 1.19663 1.25266 1.95486 1.22150 0.91426 0.86772 1.02768 1.19859 0.88240 0.83212 0.76499 1.90715 1.74560 1.25687 1.49133 1.49271 1.07300 1.05697 1.73469 1.23456 0.99938 0.80709 1.02918 1.24885 0.89473 0.99791 0.89662 0.82742 1.24027 1.01623 0.94054 0.97917 1.24035 0.79752 0.99024 0.96208 0.85595 1.24016 1.02023 0.88660 0.96245 1.65505 1.36330 1.17336 1.01641 1.22257 0.95251 0.96567 0.96429 1.19638 0.83708 0.88254 0.85599 1.90468 1.59391 1.62146 1.34496 1.41874 1.37980 1.13167 1.26726 1.19692 1.22194 0.88080 1.12965 0.87822 1.25272 0.96932 1.00191 0.95467 1.69613 1.31425 1.37325 1.15760 0.85862 0.79071 0.81869 0.77532 1.20411 1.20908 1.19357 0.92391 0.92510 0.91979 0.91066 0.90974 0.92952 0.93124 0.90187 0.90310 0.89915 0.90713 0.88472 0.90025 0.91978 0.89123 0.92913 0.89110 0.77508 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -1.07 6.30 -26.73 -0.17 -1.24 16 3 C 0.06 0.58 5.94 37.16 0.22 0.80 16 4 O -0.37 -4.93 9.88 -55.14 -0.54 -5.47 16 5 C 0.05 0.59 5.70 36.00 0.21 0.80 16 6 C 0.53 7.83 7.97 -10.99 -0.09 7.74 16 7 O -0.53 -9.57 16.86 -14.36 -0.24 -9.81 16 8 N -0.62 -8.15 2.95 -156.77 -0.46 -8.61 16 9 C 0.05 0.70 5.65 -1.68 -0.01 0.69 16 10 C 0.07 1.00 4.14 -62.34 -0.26 0.74 16 11 H 0.16 2.58 6.45 -51.93 -0.34 2.25 16 12 C -0.14 -1.57 6.80 -22.28 -0.15 -1.72 16 13 C 0.11 1.36 5.22 -62.54 -0.33 1.04 16 14 H 0.13 1.45 8.08 -51.93 -0.42 1.03 16 15 C 0.02 0.25 6.27 -0.77 0.00 0.24 16 16 N -0.48 -7.48 5.23 -217.17 -1.14 -8.62 16 17 C 0.03 0.45 4.66 -4.98 -0.02 0.42 16 18 C 0.44 9.65 7.50 -10.98 -0.08 9.57 16 19 O -0.58 -14.24 13.68 5.55 0.08 -14.16 16 20 N -0.56 -13.41 5.29 -10.96 -0.06 -13.47 16 21 C -0.30 -7.94 9.68 -14.93 -0.14 -8.08 16 22 H 0.10 2.87 7.16 -52.48 -0.38 2.50 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -23.65 13.05 55.50 0.72 -22.93 16 25 Si 0.93 20.28 29.55 -169.99 -5.02 15.26 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.18 5.30 -51.93 -0.28 0.90 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.83 7.65 -51.93 -0.40 0.43 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.83 5.63 -51.93 -0.29 0.53 16 45 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 47 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -31.87 379.51 -8.98 -40.85 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.47 Total: 10.39 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -0.56 Total: 10.86 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.93 Total: -53.62 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.71 Total: -29.45 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.87 -8.98 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692357712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.116 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds