Wall clock time and date at job start Tue Mar 31 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00359 * 2 1 4 4 O 1.42890 * 109.47590 * 135.00058 * 3 2 1 5 5 C 1.42901 * 114.00141 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47193 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00050 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99881 * 179.97438 * 6 5 4 9 9 C 1.46508 * 119.99789 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47065 * 180.02562 * 9 8 6 11 11 H 1.08998 * 110.35246 * 307.14296 * 10 9 8 12 12 C 1.54597 * 110.31107 * 69.28110 * 10 9 8 13 13 C 1.54936 * 102.91999 * 140.87425 * 12 10 9 14 14 N 1.48542 * 103.23034 * 322.58734 * 13 12 10 15 15 C 1.46893 * 111.00222 * 159.72082 * 14 13 12 16 16 C 1.50708 * 109.47146 * 52.60642 * 15 14 13 17 17 O 1.21288 * 119.99815 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99719 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99349 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00515 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99490 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.47194 * 300.00675 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00238 * 23 21 19 27 27 C 1.47906 * 105.81487 * 39.20545 * 14 13 12 28 28 H 1.07995 * 120.00193 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99862 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00343 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.46938 * 14.99709 * 3 2 1 32 32 H 1.09005 * 109.47075 * 255.00788 * 3 2 1 33 33 H 1.08995 * 109.47065 * 60.00240 * 5 4 3 34 34 H 1.09004 * 109.47237 * 299.99767 * 5 4 3 35 35 H 0.96999 * 120.00709 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.46996 * 60.00602 * 9 8 6 37 37 H 1.09004 * 109.47311 * 300.00130 * 9 8 6 38 38 H 1.08998 * 110.72504 * 259.23418 * 12 10 9 39 39 H 1.09003 * 110.72153 * 22.51904 * 12 10 9 40 40 H 1.09001 * 110.66896 * 204.15732 * 13 12 10 41 41 H 1.08998 * 110.66946 * 81.02629 * 13 12 10 42 42 H 1.09002 * 109.47091 * 292.60813 * 15 14 13 43 43 H 1.09000 * 109.47343 * 172.60431 * 15 14 13 44 44 H 0.96996 * 120.00564 * 359.97438 * 18 16 15 45 45 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.91096 * 94.02703 * 27 14 13 47 47 H 1.08997 * 109.91366 * 215.31942 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4353 1.0327 6 6 4.9942 2.2568 2.0618 7 8 5.0898 1.2103 2.6673 8 7 5.8594 3.2601 2.3092 9 6 6.9152 3.0867 3.3100 10 6 7.7515 4.3650 3.3957 11 1 8.1052 4.6537 2.4060 12 6 6.9214 5.5083 4.0233 13 6 7.9536 6.2315 4.9245 14 7 8.7714 5.1164 5.4671 15 6 10.0715 5.6026 5.9478 16 6 9.8572 6.7453 6.9068 17 8 8.7321 7.1183 7.1639 18 7 10.9158 7.3534 7.4777 19 6 10.7207 8.3926 8.3505 20 1 9.7190 8.7241 8.5801 21 6 11.8122 9.0192 8.9396 22 7 13.0312 8.6154 8.6606 23 14 11.5465 10.4356 10.1282 24 1 12.8608 10.9266 10.6147 25 1 10.8319 11.5369 9.4341 26 1 10.7355 9.9687 11.2812 27 6 8.9424 4.1616 4.3505 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4755 1.4868 -0.9927 33 1 3.2678 3.2694 1.3204 34 1 4.3580 2.6408 0.0615 35 1 5.7827 4.0972 1.8252 36 1 7.5548 2.2523 3.0225 37 1 6.4650 2.8817 4.2813 38 1 6.5451 6.1802 3.2519 39 1 6.1022 5.1073 4.6203 40 1 7.4520 6.7679 5.7300 41 1 8.5705 6.9097 4.3351 42 1 10.6668 5.9453 5.1015 43 1 10.5959 4.7942 6.4574 44 1 11.8156 7.0554 7.2718 45 1 13.7931 9.0531 9.0715 46 1 9.8767 4.3654 3.8276 47 1 8.9423 3.1405 4.7320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753121470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:15 Heat of formation + Delta-G solvation = -85.527959 kcal Electronic energy + Delta-G solvation = -26434.601161 eV Core-core repulsion = 22425.353318 eV Total energy + Delta-G solvation = -4009.247843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.16895 -39.27976 -38.18757 -37.56838 -35.11081 -34.27935 -33.92917 -32.13501 -31.24363 -29.70880 -28.66137 -27.06041 -26.02143 -24.72302 -23.82689 -21.37320 -20.88045 -20.50287 -20.04688 -19.24245 -17.88854 -17.60922 -17.31680 -16.83597 -16.31162 -15.85801 -15.79235 -15.28258 -15.15050 -14.74278 -14.51208 -14.39609 -13.99870 -13.80183 -13.63863 -13.47249 -13.23822 -12.68322 -12.60395 -12.50563 -12.25150 -12.02958 -11.68502 -11.55127 -11.44958 -11.28102 -11.15587 -10.94984 -10.74768 -10.58045 -10.45573 -10.41556 -10.23401 -10.04080 -9.79688 -9.49691 -9.30806 -8.37623 -8.02728 -7.90596 -6.43671 -3.84663 1.65475 2.35716 2.55702 3.18562 3.24696 3.28857 3.63038 3.87613 4.07413 4.28689 4.32905 4.50960 4.55332 4.59699 4.62397 4.68700 4.72660 4.79934 4.86396 5.02025 5.07823 5.22997 5.27228 5.39322 5.40839 5.48817 5.60725 5.65332 5.77897 5.85656 5.88866 5.98435 6.05261 6.10043 6.13757 6.17646 6.25491 6.31805 6.58436 6.67261 7.20064 7.23697 7.29735 7.53224 7.96140 8.03802 8.59503 9.15760 9.51634 10.03337 10.73880 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.041742 B = 0.001577 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.633776 B =17749.036882 C =18115.693601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.044 3.956 6 C 0.511 3.489 7 O -0.518 6.518 8 N -0.727 5.727 9 C 0.132 3.868 10 C -0.111 4.111 11 H 0.079 0.921 12 C -0.123 4.123 13 C 0.038 3.962 14 N -0.495 5.495 15 C 0.036 3.964 16 C 0.441 3.559 17 O -0.581 6.581 18 N -0.561 5.561 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.284 1.284 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.041 3.959 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.035 0.965 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.046 0.954 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 -11.066 -20.644 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.010 3.990 4 O -0.278 6.278 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.392 6.392 8 N -0.381 5.381 9 C 0.009 3.991 10 C -0.130 4.130 11 H 0.097 0.903 12 C -0.161 4.161 13 C -0.089 4.089 14 N -0.220 5.220 15 C -0.095 4.095 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.197 5.197 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.178 4.178 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.210 1.210 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.088 4.088 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.275 -11.932 -19.370 27.972 hybrid contribution 1.061 1.566 -0.671 2.007 sum -15.214 -10.366 -20.041 27.213 Atomic orbital electron populations 1.23855 0.95500 1.02402 0.99794 1.22707 0.95628 0.98159 1.00421 1.21629 0.88727 0.96337 0.92280 1.88052 1.44353 1.34832 1.60541 1.22206 0.93304 0.89413 0.98684 1.20196 0.82399 0.84059 0.83732 1.90757 1.71990 1.26916 1.49571 1.45887 1.32333 1.17194 1.42668 1.21504 0.88307 0.97204 0.92091 1.22259 0.96069 0.95111 0.99559 0.90267 1.22700 0.98561 0.96230 0.98625 1.23477 0.94592 0.92793 0.98051 1.64617 1.13831 1.13132 1.30381 1.22101 0.91157 0.98040 0.98237 1.19712 0.85778 0.85957 0.85843 1.90432 1.22997 1.67535 1.65640 1.41844 1.07479 1.30606 1.39790 1.19658 0.94948 1.08755 1.19675 0.87929 1.25264 0.94609 0.99300 0.98657 1.69605 0.97997 1.42321 1.44305 0.85916 0.77315 0.80721 0.80257 1.20965 1.19929 1.19858 1.22895 0.95995 0.98697 0.91203 0.87645 0.88372 0.86380 0.92473 0.92064 0.90090 0.90207 0.76569 0.91335 0.90528 0.91499 0.90550 0.86376 0.94682 0.93380 0.89188 0.77442 0.91789 0.93538 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 14.31 29.02 0.42 -0.56 16 2 C -0.15 -1.04 9.89 -36.02 -0.36 -1.40 16 3 C 0.09 0.58 6.35 36.01 0.23 0.81 16 4 O -0.36 -3.67 9.86 -55.14 -0.54 -4.21 16 5 C 0.04 0.32 6.42 36.01 0.23 0.55 16 6 C 0.51 5.48 7.91 -10.99 -0.09 5.39 16 7 O -0.52 -8.20 16.50 -14.35 -0.24 -8.44 16 8 N -0.73 -6.05 5.43 -60.29 -0.33 -6.38 16 9 C 0.13 1.33 4.76 -4.04 -0.02 1.31 16 10 C -0.11 -1.09 3.03 -89.27 -0.27 -1.36 16 11 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 12 C -0.12 -1.40 6.41 -24.87 -0.16 -1.56 16 13 C 0.04 0.61 5.30 -1.89 -0.01 0.60 16 14 N -0.50 -8.14 5.26 -231.88 -1.22 -9.36 16 15 C 0.04 0.65 5.52 -4.98 -0.03 0.62 16 16 C 0.44 10.27 7.49 -10.98 -0.08 10.19 16 17 O -0.58 -15.19 13.09 5.55 0.07 -15.11 16 18 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.04 0.50 6.36 -2.75 -0.02 0.48 16 28 H 0.11 0.47 8.06 -52.49 -0.42 0.04 16 29 H 0.10 0.43 7.90 -52.49 -0.41 0.02 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.06 0.30 7.86 -51.93 -0.41 -0.11 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.40 2.12 8.41 -40.82 -0.34 1.77 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.93 7.99 -51.93 -0.42 0.51 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.93 7.76 -51.93 -0.40 0.53 16 40 H 0.12 2.32 5.97 -51.93 -0.31 2.01 16 41 H 0.03 0.57 8.02 -51.93 -0.42 0.15 16 42 H 0.05 0.78 7.81 -51.93 -0.41 0.37 16 43 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.05 0.53 7.57 -51.93 -0.39 0.14 16 47 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -34.62 391.73 -8.65 -43.27 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.55 Total: 9.09 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.40 Total: 7.14 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.88 Total: -53.49 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.71 Total: -27.76 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.62 -8.65 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753121470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.261 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds