Wall clock time and date at job start Tue Mar 31 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 120.00249 * 2 1 4 4 O 1.42898 * 109.46963 * 134.72373 * 3 2 1 5 5 C 1.42906 * 113.99964 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47033 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00392 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99462 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99488 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46935 * 180.02562 * 9 8 6 11 11 H 1.09003 * 110.64267 * 54.30116 * 10 9 8 12 12 C 1.54599 * 110.72604 * 291.15258 * 10 9 8 13 13 C 1.53992 * 105.13915 * 219.68437 * 12 10 9 14 14 N 1.47900 * 107.05831 * 358.77397 * 13 12 10 15 15 C 1.46901 * 111.00270 * 145.84273 * 14 13 12 16 16 C 1.50701 * 109.47543 * 183.36261 * 15 14 13 17 17 O 1.21296 * 119.99740 * 353.86600 * 16 15 14 18 18 N 1.34773 * 120.00157 * 173.86870 * 16 15 14 19 19 C 1.37099 * 119.99752 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00218 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99800 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00137 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99919 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47536 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47387 * 120.00233 * 23 21 19 26 26 H 1.48504 * 109.47187 * 239.99827 * 23 21 19 27 27 C 1.48726 * 105.94385 * 25.20256 * 14 13 12 28 28 H 1.08000 * 120.00474 * 179.97438 * 1 2 3 29 29 H 1.08007 * 119.99567 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99650 * 179.72643 * 2 1 3 31 31 H 1.08998 * 109.46969 * 254.72527 * 3 2 1 32 32 H 1.08999 * 109.46704 * 14.72703 * 3 2 1 33 33 H 1.08993 * 109.46870 * 300.00384 * 5 4 3 34 34 H 1.09002 * 109.46628 * 59.99803 * 5 4 3 35 35 H 0.96998 * 120.00643 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.47443 * 299.99919 * 9 8 6 37 37 H 1.09004 * 109.47088 * 60.00240 * 9 8 6 38 38 H 1.09008 * 110.30508 * 338.59681 * 12 10 9 39 39 H 1.08999 * 110.30966 * 100.66838 * 12 10 9 40 40 H 1.09003 * 109.91671 * 118.12607 * 13 12 10 41 41 H 1.08994 * 109.91973 * 239.22161 * 13 12 10 42 42 H 1.09003 * 109.47153 * 303.36675 * 15 14 13 43 43 H 1.09006 * 109.46818 * 63.36103 * 15 14 13 44 44 H 0.96997 * 119.99835 * 359.97438 * 18 16 15 45 45 H 0.96992 * 120.00249 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.84042 * 202.57421 * 27 14 13 47 47 H 1.09005 * 110.58831 * 79.38625 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1228 1.2435 0.9572 5 6 3.9036 2.4376 1.0379 6 6 4.9848 2.2620 2.0728 7 8 5.0774 1.2173 2.6818 8 7 5.8489 3.2660 2.3216 9 6 6.8997 3.0954 3.3281 10 6 7.7357 4.3739 3.4143 11 1 7.0976 5.2387 3.5965 12 6 8.5690 4.5706 2.1271 13 6 9.9341 5.0962 2.6081 14 7 9.8583 5.2170 4.0802 15 6 11.1546 4.9131 4.7009 16 6 11.0181 4.9656 6.2008 17 8 9.9784 5.3378 6.7025 18 7 12.0512 4.5990 6.9847 19 6 11.9271 4.6472 8.3493 20 1 11.0017 4.9794 8.7959 21 6 12.9921 4.2687 9.1575 22 7 14.1181 3.8641 8.6140 23 14 12.8228 4.3338 11.0166 24 1 11.4659 4.8201 11.3735 25 1 13.0263 2.9749 11.5801 26 1 13.8421 5.2585 11.5745 27 6 8.8173 4.2485 4.5165 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9353 0.0045 31 1 2.4797 1.4843 -0.9913 32 1 1.3845 2.1166 0.2613 33 1 4.3578 2.6408 0.0681 34 1 3.2624 3.2725 1.3208 35 1 5.7746 4.1017 1.8348 36 1 6.4447 2.8932 4.2977 37 1 7.5407 2.2600 3.0462 38 1 8.6914 3.6205 1.6068 39 1 8.0899 5.2999 1.4739 40 1 10.7205 4.3932 2.3332 41 1 10.1349 6.0704 2.1625 42 1 11.4768 3.9162 4.4000 43 1 11.8932 5.6467 4.3774 44 1 12.8826 4.3010 6.5835 45 1 14.8616 3.6002 9.1782 46 1 8.4104 4.5281 5.4883 47 1 9.2225 3.2370 4.5446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753121471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:19 Heat of formation + Delta-G solvation = -115.857313 kcal Electronic energy + Delta-G solvation = -26556.019565 eV Core-core repulsion = 22545.456543 eV Total energy + Delta-G solvation = -4010.563022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07061 -40.54759 -39.28197 -38.66603 -36.24357 -35.82876 -34.76311 -33.46246 -33.05036 -30.71871 -29.45753 -28.38452 -26.84292 -26.14691 -25.12798 -22.45071 -21.62937 -21.26953 -20.99665 -20.81074 -19.87928 -18.31523 -18.03855 -17.81225 -17.40749 -16.98769 -16.64915 -16.58454 -16.19501 -16.08712 -16.04087 -15.60363 -15.31383 -14.84017 -14.82028 -14.49941 -14.08121 -14.02825 -13.76067 -13.54370 -13.22797 -13.16214 -13.07363 -12.93223 -12.86002 -12.42018 -12.38185 -12.14791 -12.06663 -11.89576 -11.88163 -11.49896 -11.47002 -11.01080 -10.88419 -10.26779 -10.26221 -10.16409 -10.01351 -9.31232 -8.47782 -5.96283 1.19027 1.35398 1.40730 1.54861 1.55138 1.87070 2.03803 2.27899 2.84486 3.07659 3.19202 3.31194 3.60680 3.73578 3.81874 3.90131 4.07161 4.17823 4.25648 4.28219 4.28613 4.33739 4.34014 4.34925 4.46930 4.48228 4.59136 4.61283 4.69304 4.76636 4.82802 4.98158 4.99012 5.11295 5.24405 5.27531 5.39025 5.40693 5.65816 5.70019 5.85512 5.97327 6.09332 6.12235 6.55005 6.59548 7.12104 7.22156 7.55127 8.10877 8.69965 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.001781 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.004207 B =15717.398763 C =16666.906719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.085 3.915 4 O -0.401 6.401 5 C 0.048 3.952 6 C 0.505 3.495 7 O -0.582 6.582 8 N -0.706 5.706 9 C 0.138 3.862 10 C -0.088 4.088 11 H 0.099 0.901 12 C -0.114 4.114 13 C 0.030 3.970 14 N -0.513 5.513 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.614 6.614 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.270 1.270 27 C 0.046 3.954 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.421 0.579 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.066 0.934 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.056 -0.132 -24.183 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C 0.009 3.991 4 O -0.321 6.321 5 C -0.031 4.031 6 C 0.292 3.708 7 O -0.461 6.461 8 N -0.361 5.361 9 C 0.013 3.987 10 C -0.107 4.107 11 H 0.117 0.883 12 C -0.152 4.152 13 C -0.097 4.097 14 N -0.237 5.237 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.500 6.500 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.082 4.082 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.259 0.741 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -19.577 -0.311 -23.074 30.262 hybrid contribution 1.047 -0.694 0.692 1.434 sum -18.530 -1.005 -22.382 29.074 Atomic orbital electron populations 1.24064 0.95063 1.03490 0.97841 1.22817 0.96356 0.98238 1.02311 1.21791 0.88382 0.96460 0.92435 1.88010 1.45881 1.36629 1.61542 1.22356 0.92566 0.89360 0.98860 1.21037 0.82851 0.83175 0.83760 1.90739 1.73605 1.29623 1.52136 1.45654 1.31180 1.17874 1.41368 1.21143 0.88828 0.97272 0.91459 1.22181 0.95810 0.97234 0.95504 0.88323 1.22494 0.93922 1.02563 0.96235 1.23052 0.98258 1.02064 0.86355 1.64483 1.04381 1.48770 1.06082 1.21965 0.93764 1.01809 0.90721 1.20767 0.84237 0.82494 0.89891 1.90469 1.30095 1.52806 1.76644 1.41942 1.14360 1.58683 1.06181 1.19698 1.00581 1.43508 0.82403 0.90321 1.26025 0.94305 0.96046 1.04854 1.69674 1.04018 1.44515 1.37955 0.84875 0.78285 0.78276 0.76925 1.19848 1.19723 1.19479 1.23149 0.92679 0.93146 0.99232 0.86962 0.86867 0.87824 0.90239 0.90718 0.86577 0.86987 0.74084 0.93233 0.92313 0.90410 0.87707 0.93110 0.88815 0.91780 0.87055 0.77081 0.91321 0.91507 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 14.31 67.77 0.97 -0.69 16 2 C -0.18 -2.45 9.89 25.64 0.25 -2.19 16 3 C 0.08 1.00 6.35 71.24 0.45 1.46 16 4 O -0.40 -7.96 9.86 -129.94 -1.28 -9.24 16 5 C 0.05 0.59 6.42 71.24 0.46 1.05 16 6 C 0.50 10.78 7.91 87.66 0.69 11.47 16 7 O -0.58 -19.85 16.50 16.01 0.26 -19.59 16 8 N -0.71 -11.15 5.43 -463.05 -2.52 -13.66 16 9 C 0.14 3.03 5.01 86.38 0.43 3.46 16 10 C -0.09 -1.85 3.09 -9.59 -0.03 -1.88 16 11 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 12 C -0.11 -1.77 6.32 31.47 0.20 -1.57 16 13 C 0.03 0.63 6.70 86.45 0.58 1.21 16 14 N -0.51 -16.17 5.11 -887.02 -4.53 -20.70 16 15 C 0.05 1.72 5.31 85.56 0.45 2.17 16 16 C 0.44 21.18 7.42 87.66 0.65 21.83 16 17 O -0.61 -34.09 13.87 -3.08 -0.04 -34.13 16 18 N -0.57 -29.96 5.29 -306.98 -1.62 -31.58 16 19 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 22 N -0.92 -50.26 13.05 21.66 0.28 -49.98 16 23 Si 0.99 43.65 29.55 68.60 2.03 45.67 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C 0.05 1.49 5.04 86.61 0.44 1.93 16 28 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 29 H 0.11 0.75 7.90 -2.91 -0.02 0.73 16 30 H 0.10 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.58 7.86 -2.39 -0.02 0.56 16 33 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.42 3.12 8.41 -92.71 -0.78 2.34 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.44 8.02 -2.39 -0.02 1.42 16 38 H 0.08 1.11 7.76 -2.38 -0.02 1.09 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.00 7.68 -2.39 -0.02 0.99 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 2.04 7.99 -2.39 -0.02 2.02 16 43 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 44 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 45 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.07 2.73 6.45 -2.39 -0.02 2.71 16 47 H 0.03 1.00 7.92 -2.38 -0.02 0.98 16 Total: -1.00 -81.67 393.51 -1.12 -82.79 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.54 Total: 30.75 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 6.83 Total: 19.68 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -8.38 Total: -115.93 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: -1.06 Total: -62.96 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -81.67 -1.12 -82.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753121471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.066 kcal (2) G-P(sol) polarization free energy of solvation -81.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds