Wall clock time and date at job start Tue Mar 31 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47454 * 239.99999 * 2 1 3 5 5 N 1.46498 * 109.47268 * 185.17049 * 4 2 1 6 6 C 1.34777 * 120.00111 * 174.94892 * 5 4 2 7 7 O 1.21289 * 119.99872 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00281 * 180.02562 * 6 5 4 9 9 C 1.53005 * 119.80933 * 250.98188 * 8 6 5 10 10 C 1.52989 * 60.65468 * 247.68815 * 9 8 6 11 11 H 1.09006 * 120.24864 * 112.13841 * 10 9 8 12 12 C 1.54482 * 118.06875 * 269.59198 * 10 9 8 13 13 O 1.44419 * 104.80418 * 86.82663 * 12 10 9 14 14 C 1.43865 * 105.57063 * 319.94392 * 13 12 10 15 15 N 1.46902 * 109.47611 * 119.99855 * 2 1 3 16 16 C 1.46901 * 111.00105 * 290.65109 * 15 2 1 17 17 C 1.46905 * 110.99563 * 54.59951 * 15 2 1 18 18 C 1.50704 * 109.47107 * 170.00239 * 17 15 2 19 19 O 1.21290 * 119.99645 * 0.02562 * 18 17 15 20 20 N 1.34774 * 119.99872 * 179.97438 * 18 17 15 21 21 C 1.37094 * 119.99680 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00290 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00076 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00227 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99817 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47401 * 90.00022 * 25 23 21 27 27 H 1.48499 * 109.47059 * 210.00351 * 25 23 21 28 28 H 1.48501 * 109.46916 * 329.99856 * 25 23 21 29 29 H 1.08996 * 109.47062 * 299.99752 * 1 2 3 30 30 H 1.09002 * 109.46877 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47343 * 60.00241 * 1 2 3 32 32 H 1.08999 * 109.47321 * 305.17625 * 4 2 1 33 33 H 1.09003 * 109.46805 * 65.17817 * 4 2 1 34 34 H 0.96995 * 120.00370 * 354.95605 * 5 4 2 35 35 H 1.09001 * 117.42752 * 355.37048 * 9 8 6 36 36 H 1.09002 * 117.43272 * 140.01065 * 9 8 6 37 37 H 1.09000 * 110.37526 * 205.66134 * 12 10 9 38 38 H 1.09000 * 110.36851 * 327.99657 * 12 10 9 39 39 H 1.08997 * 109.56287 * 281.17322 * 14 13 12 40 40 H 1.08998 * 110.92105 * 159.00963 * 14 13 12 41 41 H 1.09009 * 109.47169 * 66.24415 * 16 15 2 42 42 H 1.08999 * 109.47207 * 186.24875 * 16 15 2 43 43 H 1.09002 * 109.46824 * 306.25057 * 16 15 2 44 44 H 1.08997 * 109.47222 * 290.00168 * 17 15 2 45 45 H 1.08998 * 109.47286 * 50.00403 * 17 15 2 46 46 H 0.96999 * 120.00176 * 0.02562 * 20 18 17 47 47 H 0.97002 * 119.99947 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.4997 -0.8299 -1.1885 6 6 4.1640 -1.5209 -2.1360 7 8 3.5533 -2.0524 -3.0392 8 6 5.6654 -1.6333 -2.0734 9 6 6.5274 -0.8826 -3.0904 10 6 6.4815 -2.4113 -3.1298 11 1 6.0112 -2.9251 -3.9682 12 6 7.5242 -3.1914 -2.2987 13 8 6.9339 -3.3129 -0.9863 14 6 6.3025 -2.0463 -0.7280 15 7 2.0197 -0.6925 1.1994 16 6 1.7393 0.0902 2.4106 17 6 1.4462 -2.0412 1.2997 18 6 2.1490 -2.8061 2.3915 19 8 3.0397 -2.2793 3.0242 20 7 1.7871 -4.0751 2.6656 21 6 2.4268 -4.7710 3.6585 22 1 3.2205 -4.3023 4.2213 23 6 2.0542 -6.0796 3.9407 24 7 2.6670 -6.7465 4.8928 25 14 0.6819 -6.8906 2.9667 26 1 1.2546 -7.5729 1.7785 27 1 -0.0112 -7.8863 3.8230 28 1 -0.2886 -5.8573 2.5243 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.6030 -1.7186 -1.2968 33 1 1.7544 -0.1566 -2.1368 34 1 3.9882 -0.4047 -0.4665 35 1 6.0116 -0.3440 -3.8855 36 1 7.4431 -0.4169 -2.7261 37 1 7.6936 -4.1774 -2.7314 38 1 8.4595 -2.6343 -2.2440 39 1 7.0551 -1.3183 -0.4252 40 1 5.5360 -2.1431 0.0408 41 1 0.6618 0.1434 2.5674 42 1 2.2083 -0.3894 3.2697 43 1 2.1395 1.0972 2.2932 44 1 0.3841 -1.9679 1.5332 45 1 1.5745 -2.5620 0.3508 46 1 1.0746 -4.4962 2.1598 47 1 2.4065 -7.6599 5.0900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755303242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:44 Heat of formation + Delta-G solvation = -91.327882 kcal Electronic energy + Delta-G solvation = -28965.691189 eV Core-core repulsion = 24956.191843 eV Total energy + Delta-G solvation = -4009.499346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90219 -40.79374 -39.86606 -38.70846 -36.05225 -35.70410 -35.31538 -33.75053 -32.14154 -30.04506 -29.64726 -27.62330 -26.66690 -26.38316 -25.27709 -23.79519 -22.08205 -21.79074 -21.05052 -20.52687 -19.86761 -18.54787 -18.11285 -17.33290 -16.97881 -16.79583 -16.68392 -16.46488 -16.09247 -15.95787 -15.67577 -15.44031 -15.17770 -14.94648 -14.92642 -14.39750 -14.25745 -13.98696 -13.95239 -13.74348 -13.54412 -13.13400 -13.06514 -12.96329 -12.85278 -12.47897 -12.40862 -12.24479 -12.20156 -11.99835 -11.82813 -11.75876 -11.47834 -11.32094 -10.91067 -10.58017 -10.36099 -10.23290 -10.05810 -9.19786 -8.42108 -6.01448 1.25738 1.32153 1.39324 1.43206 1.95557 2.10876 2.20089 2.35914 2.62734 3.01005 3.13942 3.23018 3.35550 3.40187 3.72809 3.73812 3.94750 3.99829 4.00844 4.14124 4.27799 4.33795 4.33995 4.36314 4.57032 4.57782 4.63372 4.66182 4.67278 4.67834 4.73532 4.78554 4.87306 4.89626 5.01863 5.09314 5.25178 5.29212 5.44721 5.52419 5.72992 5.89153 6.00200 6.19282 6.53918 6.59084 6.88605 7.19083 7.39848 7.96527 8.75525 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009603 B = 0.004319 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.092203 B = 6481.893714 C = 8156.210361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.074 3.926 3 H 0.114 0.886 4 C 0.125 3.875 5 N -0.699 5.699 6 C 0.555 3.445 7 O -0.586 6.586 8 C -0.227 4.227 9 C -0.072 4.072 10 C -0.165 4.165 11 H 0.121 0.879 12 C 0.067 3.933 13 O -0.403 6.403 14 C 0.088 3.912 15 N -0.524 5.524 16 C 0.026 3.974 17 C 0.053 3.947 18 C 0.454 3.546 19 O -0.597 6.597 20 N -0.597 5.597 21 C -0.322 4.322 22 H 0.059 0.941 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.957 3.043 26 H -0.264 1.264 27 H -0.271 1.271 28 H -0.234 1.234 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.385 0.615 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 16.854 -18.566 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.034 4.034 3 H 0.132 0.868 4 C 0.001 3.999 5 N -0.349 5.349 6 C 0.342 3.658 7 O -0.468 6.468 8 C -0.231 4.231 9 C -0.109 4.109 10 C -0.184 4.184 11 H 0.139 0.861 12 C -0.008 4.008 13 O -0.322 6.322 14 C 0.011 3.989 15 N -0.249 5.249 16 C -0.122 4.122 17 C -0.078 4.078 18 C 0.241 3.759 19 O -0.480 6.480 20 N -0.239 5.239 21 C -0.451 4.451 22 H 0.077 0.923 23 C -0.211 4.211 24 N -0.574 5.574 25 Si 0.778 3.222 26 H -0.189 1.189 27 H -0.196 1.196 28 H -0.157 1.157 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.252 0.748 35 H 0.136 0.864 36 H 0.154 0.846 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.220 0.780 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.740 16.435 -18.509 24.764 hybrid contribution -1.409 -0.933 0.472 1.754 sum -0.668 15.503 -18.037 23.793 Atomic orbital electron populations 1.22380 0.94905 1.02907 1.03967 1.22105 0.94707 0.98779 0.87846 0.86766 1.21549 0.79619 1.00605 0.98079 1.45717 1.08082 1.53241 1.27863 1.19418 0.87985 0.77180 0.81267 1.90661 1.70044 1.48823 1.37225 1.23293 0.91602 1.13282 0.94884 1.23302 0.99656 0.91690 0.96252 1.24395 0.98770 0.95347 0.99844 0.86130 1.23215 0.94951 1.01834 0.80842 1.89122 1.72593 1.35076 1.35451 1.22742 0.96774 0.85857 0.93512 1.61723 1.58902 1.00703 1.03534 1.22441 0.99104 0.98233 0.92399 1.21810 0.97256 0.91368 0.97395 1.20819 0.85943 0.82121 0.86990 1.90502 1.34129 1.69025 1.54366 1.42090 1.34916 1.13014 1.33831 1.18984 1.17297 0.96324 1.12518 0.92275 1.26003 1.00985 0.96316 0.97812 1.69789 1.43423 1.12141 1.32076 0.85475 0.78594 0.79490 0.78691 1.18851 1.19637 1.15692 0.91278 0.92510 0.89684 0.92960 0.89625 0.74840 0.86429 0.84648 0.87707 0.88803 0.88683 0.90499 0.94774 0.92904 0.89479 0.90422 0.88400 0.78004 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 8.46 71.98 0.61 -2.05 16 2 C 0.07 1.31 2.46 44.91 0.11 1.42 16 3 H 0.11 1.58 8.00 -2.39 -0.02 1.56 16 4 C 0.13 2.61 4.85 86.38 0.42 3.03 16 5 N -0.70 -16.46 5.24 -463.06 -2.43 -18.89 16 6 C 0.55 15.48 7.42 87.65 0.65 16.13 16 7 O -0.59 -20.40 16.84 -3.06 -0.05 -20.46 16 8 C -0.23 -5.23 2.84 -51.91 -0.15 -5.37 16 9 C -0.07 -1.04 9.89 30.59 0.30 -0.74 16 10 C -0.16 -3.35 6.90 -9.78 -0.07 -3.42 16 11 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 12 C 0.07 1.38 7.45 72.49 0.54 1.92 16 13 O -0.40 -12.35 11.62 -148.98 -1.73 -14.08 16 14 C 0.09 2.29 7.09 72.49 0.51 2.80 16 15 N -0.52 -13.78 3.96 -901.59 -3.57 -17.35 16 16 C 0.03 0.68 8.85 127.69 1.13 1.81 16 17 C 0.05 1.65 4.41 85.56 0.38 2.03 16 18 C 0.45 20.54 7.52 87.66 0.66 21.20 16 19 O -0.60 -31.92 13.88 -3.06 -0.04 -31.97 16 20 N -0.60 -29.03 5.09 -306.99 -1.56 -30.59 16 21 C -0.32 -19.20 10.16 84.04 0.85 -18.34 16 22 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.93 -57.38 13.96 21.66 0.30 -57.08 16 25 Si 0.96 40.64 27.74 68.60 1.90 42.54 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 28 H -0.23 -8.44 6.52 99.48 0.65 -7.79 16 29 H 0.07 0.99 6.80 -2.39 -0.02 0.97 16 30 H 0.06 0.92 6.56 -2.39 -0.02 0.91 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.05 1.30 6.58 -2.39 -0.02 1.28 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 9.13 8.03 -92.71 -0.74 8.39 16 35 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 2.43 7.88 -2.39 -0.02 2.42 16 41 H 0.03 0.79 6.85 -2.38 -0.02 0.77 16 42 H 0.05 1.91 5.92 -2.39 -0.01 1.90 16 43 H 0.09 1.79 8.02 -2.39 -0.02 1.77 16 44 H 0.08 2.07 6.81 -2.39 -0.02 2.05 16 45 H 0.10 2.93 6.15 -2.39 -0.01 2.91 16 46 H 0.39 16.05 5.76 -92.71 -0.53 15.51 16 47 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -82.87 377.06 -1.09 -83.96 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.33 Total: 43.74 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.42 Total: 20.17 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -7.26 Total: -123.91 kcal Atomic # 8 Polarization: -64.67 SS G_CDS: -1.82 Total: -66.50 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.90 Total: 42.54 kcal Total: -82.87 -1.09 -83.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755303242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.367 kcal (2) G-P(sol) polarization free energy of solvation -82.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds