Wall clock time and date at job start Tue Mar 31 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 120.00141 * 2 1 4 4 N 1.34778 * 119.99744 * 180.27604 * 2 1 3 5 5 C 1.47150 * 120.98287 * 184.48040 * 4 2 1 6 6 C 1.53291 * 108.38792 * 230.51189 * 5 4 2 7 7 O 1.42955 * 109.22498 * 307.70103 * 6 5 4 8 8 C 1.42966 * 114.16996 * 62.57976 * 7 6 5 9 9 H 1.09004 * 109.50912 * 57.38982 * 8 7 6 10 10 C 1.50697 * 109.51381 * 177.49593 * 8 7 6 11 11 O 1.21273 * 120.00229 * 15.68971 * 10 8 7 12 12 N 1.34778 * 119.99674 * 195.68584 * 10 8 7 13 13 C 1.46497 * 119.99905 * 174.85815 * 12 10 8 14 14 C 1.46500 * 120.00383 * 354.86168 * 12 10 8 15 15 C 1.53777 * 113.61482 * 223.25060 * 14 12 10 16 16 C 1.53951 * 87.01767 * 220.04517 * 15 14 12 17 17 N 1.46506 * 113.53705 * 270.80484 * 16 15 14 18 18 C 1.36926 * 120.00435 * 252.49802 * 17 16 15 19 19 H 1.08004 * 120.00427 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00220 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99864 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00447 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46951 * 60.00143 * 22 20 18 24 24 H 1.48492 * 109.47330 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46980 * 300.00213 * 22 20 18 26 26 C 1.53776 * 87.11336 * 25.36347 * 16 15 14 27 27 C 1.47156 * 120.98445 * 4.20446 * 4 2 1 28 28 H 1.09001 * 109.47109 * 88.37144 * 1 2 3 29 29 H 1.08999 * 109.47457 * 208.37210 * 1 2 3 30 30 H 1.09000 * 109.46708 * 328.36931 * 1 2 3 31 31 H 1.08999 * 109.67961 * 350.24138 * 5 4 2 32 32 H 1.09006 * 109.68104 * 110.75255 * 5 4 2 33 33 H 1.09009 * 109.51003 * 67.62625 * 6 5 4 34 34 H 1.09001 * 109.51588 * 187.76980 * 6 5 4 35 35 H 1.08993 * 109.47421 * 94.52310 * 13 12 10 36 36 H 1.09002 * 109.47282 * 214.52566 * 13 12 10 37 37 H 1.09000 * 109.47009 * 334.52173 * 13 12 10 38 38 H 1.09003 * 112.84378 * 354.44722 * 14 12 10 39 39 H 1.08994 * 113.61734 * 334.56884 * 15 14 12 40 40 H 1.09007 * 113.61318 * 105.46902 * 15 14 12 41 41 H 1.09001 * 113.73864 * 139.94819 * 16 15 14 42 42 H 0.97005 * 119.99466 * 72.50495 * 17 16 15 43 43 H 0.97001 * 120.00156 * 179.97438 * 21 20 18 44 44 H 1.08994 * 113.61202 * 220.08966 * 26 16 15 45 45 H 1.08996 * 113.68856 * 89.19602 * 26 16 15 46 46 H 1.09001 * 109.68032 * 249.21191 * 27 4 2 47 47 H 1.09002 * 109.67986 * 9.76125 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0056 5 6 3.6488 -1.1949 0.0928 6 6 4.1925 -2.0788 -1.0355 7 8 3.5300 -3.3451 -1.0023 8 6 2.1201 -3.2743 -1.2285 9 1 1.9292 -2.7976 -2.1900 10 6 1.5403 -4.6653 -1.2322 11 8 2.1830 -5.5913 -0.7848 12 7 0.3075 -4.8801 -1.7327 13 6 -0.2116 -6.2458 -1.8402 14 6 -0.5134 -3.7480 -2.1692 15 6 -1.9834 -3.8469 -1.7286 16 6 -2.3531 -3.2968 -3.1182 17 7 -2.4157 -1.8340 -3.1707 18 6 -3.6276 -1.2035 -3.2638 19 1 -4.5375 -1.7844 -3.2981 20 6 -3.6868 0.1825 -3.3141 21 7 -2.5780 0.8905 -3.2727 22 14 -5.3401 1.0429 -3.4404 23 1 -6.1726 0.6908 -2.2622 24 1 -5.1317 2.5126 -3.4784 25 1 -6.0303 0.6090 -4.6816 26 6 -1.0180 -3.8747 -3.6163 27 6 1.4700 -2.4519 -0.1043 28 1 -0.3633 0.0292 -1.0273 29 1 -0.3634 -0.9042 0.4883 30 1 -0.3633 0.8750 0.5390 31 1 4.0428 -0.1839 -0.0105 32 1 3.9443 -1.6072 1.0576 33 1 4.0090 -1.5970 -1.9960 34 1 5.2641 -2.2248 -0.8995 35 1 -0.8050 -6.4796 -0.9564 36 1 -0.8365 -6.3280 -2.7295 37 1 0.6204 -6.9459 -1.9148 38 1 -0.0556 -2.7835 -1.9493 39 1 -2.3208 -4.8694 -1.5598 40 1 -2.2399 -3.1748 -0.9096 41 1 -3.2276 -3.7740 -3.5605 42 1 -1.5986 -1.3122 -3.1396 43 1 -2.6193 1.8590 -3.3082 44 1 -0.4963 -3.2251 -4.3191 45 1 -1.0896 -4.9048 -3.9651 46 1 1.5498 -2.9892 0.8407 47 1 0.4204 -2.2736 -0.3382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999769430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:51 Heat of formation + Delta-G solvation = -57.537236 kcal Electronic energy + Delta-G solvation = -29862.892689 eV Core-core repulsion = 25854.858615 eV Total energy + Delta-G solvation = -4008.034074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.95698 -39.78938 -38.60338 -37.81199 -34.98830 -34.63131 -32.94036 -32.27751 -30.07597 -29.87986 -28.12636 -26.79041 -25.39786 -24.98984 -24.29046 -23.01172 -22.44315 -19.84008 -19.34861 -18.53579 -17.88866 -17.25971 -17.11941 -16.73450 -16.24300 -15.70427 -15.52306 -15.20707 -15.02957 -14.85209 -14.67789 -14.15661 -13.81135 -13.61344 -13.42812 -13.18419 -12.96752 -12.85984 -12.53950 -12.29563 -12.18277 -12.02629 -11.94920 -11.80804 -11.74152 -11.53632 -11.10721 -10.96145 -10.85888 -10.46522 -10.38531 -10.32522 -10.12856 -9.83511 -9.75978 -9.59212 -9.04384 -8.74356 -8.58328 -7.17351 -5.93536 -3.23949 2.34848 2.60768 2.71266 2.83535 3.35055 3.40691 3.41989 3.68654 4.29491 4.40752 4.44254 4.52728 4.73475 4.81915 4.86469 4.92011 4.96335 4.98441 5.09146 5.25526 5.28564 5.29867 5.42875 5.43364 5.50923 5.51638 5.59978 5.65583 5.68523 5.75903 5.83302 5.94827 6.01839 6.19571 6.23496 6.25425 6.31425 6.47285 6.60627 6.73212 6.80227 7.24287 7.32882 7.57617 8.07454 8.14516 8.24344 9.35997 9.88346 10.22752 11.28091 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.010926 B = 0.004888 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.149817 B = 5727.015824 C = 7819.234070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.522 3.478 3 O -0.544 6.544 4 N -0.621 5.621 5 C 0.074 3.926 6 C 0.047 3.953 7 O -0.352 6.352 8 C 0.061 3.939 9 H 0.091 0.909 10 C 0.524 3.476 11 O -0.523 6.523 12 N -0.597 5.597 13 C 0.086 3.914 14 C 0.103 3.897 15 C -0.179 4.179 16 C 0.172 3.828 17 N -0.704 5.704 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.005 4.005 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.169 4.169 27 C 0.083 3.917 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.383 0.617 43 H 0.258 0.742 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.960 -9.782 4.641 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.313 3.687 3 O -0.420 6.420 4 N -0.357 5.357 5 C -0.049 4.049 6 C -0.030 4.030 7 O -0.270 6.270 8 C -0.001 4.001 9 H 0.108 0.892 10 C 0.309 3.691 11 O -0.398 6.398 12 N -0.331 5.331 13 C -0.056 4.056 14 C 0.000 4.000 15 C -0.222 4.222 16 C 0.058 3.942 17 N -0.342 5.342 18 C -0.380 4.380 19 H 0.090 0.910 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.210 4.210 27 C -0.041 4.041 28 H 0.136 0.864 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.217 0.783 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.536 -9.762 4.894 13.860 hybrid contribution -0.747 0.917 -0.112 1.188 sum 7.790 -8.844 4.782 12.719 Atomic orbital electron populations 1.22022 0.89939 1.04515 1.07168 1.21107 0.91118 0.82307 0.74176 1.90687 1.70812 1.30760 1.49788 1.48198 1.06863 1.05933 1.74698 1.22301 0.80422 1.02588 0.99552 1.23089 0.97687 0.84170 0.98089 1.88060 1.17323 1.28777 1.92831 1.22373 0.83932 0.94296 0.99525 0.89153 1.19904 0.81427 0.89565 0.78158 1.90697 1.59908 1.44341 1.44884 1.47873 1.14865 1.08171 1.62168 1.21600 0.99966 0.82177 1.01833 1.23079 0.91394 0.88654 0.96841 1.24326 0.93574 1.01471 1.02793 1.20968 0.94592 0.86294 0.92299 1.42154 1.06747 0.98574 1.86748 1.19186 0.85635 0.89473 1.43677 0.90976 1.24728 0.96995 0.96253 1.02227 1.69602 1.25510 1.05837 1.56639 0.86283 0.83317 0.78686 0.77948 1.21172 1.21644 1.21218 1.23983 0.99814 1.01617 0.95548 1.22525 0.97934 0.84410 0.99257 0.86379 0.90479 0.88689 0.87777 0.90602 0.92156 0.87032 0.92525 0.90743 0.90606 0.87225 0.90462 0.90672 0.91113 0.78278 0.93166 0.90899 0.89844 0.89828 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 9.38 36.01 0.34 -2.19 16 2 C 0.52 8.05 7.81 -10.98 -0.09 7.96 16 3 O -0.54 -10.23 16.57 5.56 0.09 -10.13 16 4 N -0.62 -8.11 3.01 -172.02 -0.52 -8.63 16 5 C 0.07 0.85 6.65 -3.54 -0.02 0.82 16 6 C 0.05 0.51 6.98 37.31 0.26 0.77 16 7 O -0.35 -4.85 9.97 -54.60 -0.54 -5.39 16 8 C 0.06 0.80 2.33 -27.51 -0.06 0.73 16 9 H 0.09 1.15 7.29 -51.93 -0.38 0.77 16 10 C 0.52 7.50 6.98 -10.99 -0.08 7.43 16 11 O -0.52 -9.15 16.14 -13.81 -0.22 -9.37 16 12 N -0.60 -7.42 3.09 -173.01 -0.53 -7.96 16 13 C 0.09 0.91 9.11 59.85 0.55 1.46 16 14 C 0.10 1.31 3.37 -67.12 -0.23 1.09 16 15 C -0.18 -2.43 7.41 -25.83 -0.19 -2.62 16 16 C 0.17 2.79 4.57 -67.03 -0.31 2.48 16 17 N -0.70 -14.87 5.31 -52.55 -0.28 -15.15 16 18 C -0.25 -6.10 9.97 -15.06 -0.15 -6.25 16 19 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 20 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 21 N -0.93 -25.10 13.06 55.49 0.72 -24.38 16 22 Si 0.91 20.74 29.55 -169.99 -5.02 15.71 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.17 -2.27 7.38 -25.92 -0.19 -2.46 16 27 C 0.08 1.00 5.28 -3.31 -0.02 0.98 16 28 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 29 H 0.08 0.92 6.41 -51.93 -0.33 0.59 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.10 1.23 7.06 -51.93 -0.37 0.87 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.56 8.03 -51.93 -0.42 0.14 16 36 H 0.07 0.67 6.38 -51.93 -0.33 0.34 16 37 H 0.08 0.85 7.36 -51.93 -0.38 0.47 16 38 H 0.11 1.44 4.52 -51.93 -0.23 1.21 16 39 H 0.08 0.91 7.02 -51.93 -0.36 0.55 16 40 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 41 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 42 H 0.38 8.53 7.90 -40.82 -0.32 8.21 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 0.97 6.51 -51.93 -0.34 0.63 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.11 1.28 3.75 -51.93 -0.19 1.09 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -31.31 372.35 -7.99 -39.30 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.01 Total: 10.43 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.29 Total: 9.96 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.61 Total: -56.11 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.67 Total: -24.90 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.31 -7.99 -39.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999769430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.234 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds