Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00055 * 2 1 4 4 H 1.09001 * 110.88698 * 32.42635 * 3 2 1 5 5 C 1.55160 * 111.03943 * 156.33039 * 3 2 1 6 6 C 1.54320 * 102.94435 * 153.58939 * 5 3 2 7 7 H 1.08996 * 110.01177 * 218.31678 * 6 5 3 8 8 C 1.50697 * 109.88185 * 97.22179 * 6 5 3 9 9 O 1.21284 * 120.00201 * 260.73827 * 8 6 5 10 10 N 1.34775 * 119.99876 * 80.74118 * 8 6 5 11 11 C 1.46502 * 120.00079 * 180.02562 * 10 8 6 12 12 H 1.09003 * 112.90887 * 336.24325 * 11 10 8 13 13 C 1.53779 * 113.61894 * 107.49864 * 11 10 8 14 14 C 1.53788 * 87.08079 * 139.98001 * 13 11 10 15 15 H 1.09000 * 113.68920 * 220.01169 * 14 13 11 16 16 N 1.46496 * 113.61090 * 89.11615 * 14 13 11 17 17 C 1.36945 * 119.99718 * 107.50380 * 16 14 13 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 14 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.53780 * 87.08077 * 334.56830 * 14 13 11 26 26 N 1.47027 * 107.26889 * 337.80790 * 6 5 3 27 27 C 1.34773 * 125.64793 * 178.90530 * 26 6 5 28 28 C 1.50696 * 120.00089 * 179.97438 * 27 26 6 29 29 O 1.21287 * 119.99724 * 0.02562 * 27 26 6 30 30 C 1.47420 * 108.70314 * 358.93729 * 26 6 5 31 31 H 1.08996 * 109.47189 * 60.00280 * 1 2 3 32 32 H 1.09006 * 109.47414 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47460 * 299.99872 * 1 2 3 34 34 H 1.09004 * 110.71910 * 35.22135 * 5 3 2 35 35 H 1.09001 * 110.71873 * 271.95827 * 5 3 2 36 36 H 0.97006 * 120.00256 * 359.97438 * 10 8 6 37 37 H 1.09004 * 113.60736 * 25.43667 * 13 11 10 38 38 H 1.08996 * 113.61543 * 254.52835 * 13 11 10 39 39 H 0.96996 * 120.00499 * 287.50110 * 16 14 13 40 40 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 41 41 H 1.09003 * 113.61267 * 139.98048 * 25 14 13 42 42 H 1.09000 * 113.61965 * 270.88165 * 25 14 13 43 43 H 1.08994 * 109.47324 * 359.97438 * 28 27 26 44 44 H 1.08997 * 109.47441 * 120.00019 * 28 27 26 45 45 H 1.09009 * 109.46866 * 239.99714 * 28 27 26 46 46 H 1.09004 * 110.36385 * 142.96495 * 30 26 6 47 47 H 1.08997 * 110.37206 * 265.29188 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3830 2.0101 0.5461 5 6 3.4484 1.2749 0.5814 6 6 4.1209 2.4875 -0.0959 7 1 5.1534 2.2477 -0.3498 8 6 4.0836 3.6768 0.8287 9 8 3.2351 4.5313 0.6838 10 7 4.9932 3.7911 1.8167 11 6 4.9566 4.9471 2.7159 12 1 4.4625 5.8126 2.2745 13 6 4.4608 4.6105 4.1322 14 6 5.5480 5.5646 4.6545 15 1 6.0532 5.2042 5.5506 16 7 5.1010 6.9546 4.7735 17 6 4.8792 7.4990 6.0103 18 1 5.0334 6.9034 6.8979 19 6 4.4562 8.8162 6.1231 20 7 4.2677 9.5419 5.0412 21 14 4.1530 9.5586 7.8102 22 1 3.7118 10.9684 7.6586 23 1 3.0987 8.7820 8.5105 24 1 5.4081 9.5158 8.6027 25 6 6.3168 5.2738 3.3548 26 7 3.3604 2.7813 -1.3195 27 6 3.6175 3.7842 -2.1823 28 6 2.7524 3.9690 -3.4022 29 8 4.5458 4.5374 -1.9774 30 6 2.2696 1.7977 -1.4457 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 3.9555 0.3497 0.3074 35 1 3.4294 1.3993 1.6641 36 1 5.6717 3.1076 1.9328 37 1 4.6206 3.5699 4.4148 38 1 3.4458 4.9536 4.3325 39 1 4.9621 7.4894 3.9762 40 1 3.9717 10.4622 5.1201 41 1 6.8001 6.1524 2.9276 42 1 6.9839 4.4146 3.4249 43 1 1.9771 3.2031 -3.4173 44 1 2.2889 4.9551 -3.3730 45 1 3.3658 3.8823 -4.2992 46 1 1.3759 2.2723 -1.8509 47 1 2.5794 0.9668 -2.0795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020439081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = -68.230077 kcal Electronic energy + Delta-G solvation = -28361.455799 eV Core-core repulsion = 24352.958049 eV Total energy + Delta-G solvation = -4008.497750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.98750 -39.29149 -38.58266 -37.80791 -36.28782 -34.00685 -32.77156 -31.98667 -30.02959 -29.64807 -28.86769 -26.92694 -25.07213 -24.85188 -23.82009 -22.76245 -21.94177 -20.70844 -19.56897 -18.67594 -17.77864 -17.45024 -17.32809 -16.66815 -16.13972 -15.73199 -15.39640 -15.20984 -14.98824 -14.81806 -14.68702 -14.12682 -13.88284 -13.66582 -13.30741 -13.16987 -13.04857 -12.98913 -12.66413 -12.52703 -12.22437 -12.10468 -12.01888 -11.93756 -11.70239 -11.59627 -11.23171 -10.84445 -10.77230 -10.29373 -10.23946 -10.14904 -9.96990 -9.89278 -9.70752 -9.64831 -8.90537 -8.82823 -8.64465 -6.98006 -5.76254 -3.06644 2.33896 2.57441 2.80260 3.24772 3.43188 3.44986 3.48903 3.50591 3.95362 4.08426 4.55277 4.57154 4.58328 4.70375 4.74628 4.87142 4.95040 4.96665 5.01109 5.12254 5.14936 5.18840 5.28221 5.29729 5.33086 5.40705 5.43983 5.47922 5.50936 5.57027 5.85553 5.90743 6.03997 6.12037 6.27145 6.42209 6.65619 6.67146 6.76772 6.81290 7.07345 7.20679 7.68902 7.71666 8.00395 8.40927 8.41913 9.52196 10.09145 10.43053 11.45822 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002707 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.722326 B =10339.404598 C =10921.189446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.075 3.925 4 H 0.086 0.914 5 C -0.115 4.115 6 C 0.119 3.881 7 H 0.101 0.899 8 C 0.506 3.494 9 O -0.524 6.524 10 N -0.714 5.714 11 C 0.128 3.872 12 H 0.112 0.888 13 C -0.183 4.183 14 C 0.172 3.828 15 H 0.068 0.932 16 N -0.706 5.706 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.910 3.090 22 H -0.291 1.291 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.164 4.164 26 N -0.601 5.601 27 C 0.533 3.467 28 C -0.167 4.167 29 O -0.529 6.529 30 C 0.082 3.918 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.395 0.605 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 -23.566 -15.583 28.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.291 6.291 3 C 0.016 3.984 4 H 0.104 0.896 5 C -0.153 4.153 6 C 0.011 3.989 7 H 0.119 0.881 8 C 0.290 3.710 9 O -0.399 6.399 10 N -0.365 5.365 11 C 0.024 3.976 12 H 0.130 0.870 13 C -0.226 4.226 14 C 0.059 3.941 15 H 0.086 0.914 16 N -0.344 5.344 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.204 4.204 26 N -0.338 5.338 27 C 0.323 3.677 28 C -0.226 4.226 29 O -0.404 6.404 30 C -0.042 4.042 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.374 -22.502 -15.477 27.659 hybrid contribution -0.236 0.469 0.625 0.816 sum -4.610 -22.034 -14.852 26.969 Atomic orbital electron populations 1.22867 0.80388 1.03093 1.00527 1.87900 1.20250 1.26130 1.94787 1.23257 0.94989 0.85420 0.94728 0.89558 1.22661 0.94303 0.97002 1.01366 1.21522 0.98243 0.93473 0.85644 0.88097 1.20633 0.81917 0.87368 0.81109 1.90717 1.36620 1.41479 1.71051 1.46054 1.32552 1.25764 1.32117 1.22622 0.98216 0.88626 0.88163 0.87034 1.24320 1.02560 0.99965 0.95749 1.20903 0.92475 0.86472 0.94264 0.91378 1.42205 1.78890 1.06784 1.06539 1.19224 1.38470 0.94792 0.85224 0.90982 1.24791 1.02063 0.96763 0.97160 1.69667 1.52432 1.08926 1.26726 0.86235 0.77982 0.78214 0.83537 1.21672 1.21203 1.21186 1.23899 0.95940 1.01406 0.99183 1.48142 1.31840 1.30915 1.22909 1.20500 0.85132 0.78321 0.83772 1.21868 1.00183 1.04782 0.95787 1.90773 1.31376 1.42827 1.75452 1.22796 0.90704 0.92232 0.98442 0.93748 0.89243 0.93501 0.88138 0.88665 0.77129 0.91288 0.91162 0.77947 0.93310 0.90876 0.90307 0.90588 0.88405 0.88641 0.89975 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.89 101.05 1.10 1.26 16 2 O -0.37 -2.96 10.52 -35.23 -0.37 -3.33 16 3 C 0.08 0.63 3.49 -24.58 -0.09 0.54 16 4 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 5 C -0.12 -0.94 6.22 -24.90 -0.15 -1.09 16 6 C 0.12 1.32 3.29 -68.11 -0.22 1.09 16 7 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 8 C 0.51 7.80 6.18 -10.99 -0.07 7.74 16 9 O -0.52 -10.59 15.57 5.55 0.09 -10.51 16 10 N -0.71 -10.02 5.35 -53.01 -0.28 -10.30 16 11 C 0.13 2.23 4.12 -67.12 -0.28 1.96 16 12 H 0.11 2.42 7.47 -51.93 -0.39 2.04 16 13 C -0.18 -3.28 7.68 -25.92 -0.20 -3.48 16 14 C 0.17 3.44 4.56 -67.12 -0.31 3.14 16 15 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 16 N -0.71 -18.16 5.31 -52.64 -0.28 -18.44 16 17 C -0.25 -6.93 9.97 -15.06 -0.15 -7.08 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 21 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.16 -2.74 7.58 -25.92 -0.20 -2.94 16 26 N -0.60 -6.78 2.79 -164.33 -0.46 -7.24 16 27 C 0.53 7.12 7.30 -10.99 -0.08 7.04 16 28 C -0.17 -1.41 10.19 36.00 0.37 -1.04 16 29 O -0.53 -9.67 16.72 5.55 0.09 -9.58 16 30 C 0.08 0.64 6.12 -2.53 -0.02 0.62 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.27 8.11 -51.93 -0.42 -0.15 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.78 7.82 -51.93 -0.41 0.38 16 36 H 0.40 4.07 8.73 -40.82 -0.36 3.72 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.39 10.73 7.90 -40.82 -0.32 10.40 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 43 H 0.08 0.44 6.09 -51.93 -0.32 0.12 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 46 H 0.08 0.53 6.94 -51.93 -0.36 0.17 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -37.75 388.01 -7.65 -45.40 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -7.60 Total: 11.29 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -0.39 Total: 7.32 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.30 Total: -64.07 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.19 Total: -23.42 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.75 -7.65 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020439081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.835 kcal (2) G-P(sol) polarization free energy of solvation -37.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds