Wall clock time and date at job start Tue Mar 31 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33356 * 117.94425 * 2 1 4 4 O 1.21278 * 118.24495 * 2.19666 * 3 2 1 5 5 C 1.50175 * 123.50670 * 182.22570 * 3 2 1 6 6 C 1.53072 * 109.89427 * 342.41368 * 5 3 2 7 7 C 1.53349 * 108.42201 * 48.89867 * 6 5 3 8 8 C 1.45748 * 117.94972 * 179.97438 * 2 1 3 9 9 H 1.08996 * 109.30702 * 281.23783 * 8 2 1 10 10 C 1.50704 * 109.29991 * 40.61633 * 8 2 1 11 11 O 1.21286 * 120.00024 * 21.02947 * 10 8 2 12 12 N 1.34781 * 119.99932 * 201.03816 * 10 8 2 13 13 C 1.46504 * 119.99591 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.46566 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.51184 * 59.90135 * 14 13 12 16 16 C 1.53300 * 109.50823 * 180.02562 * 14 13 12 17 17 N 1.47146 * 108.38065 * 172.22627 * 16 14 13 18 18 C 1.36941 * 120.98559 * 129.44240 * 17 16 14 19 19 H 1.07996 * 120.00254 * 206.23781 * 18 17 16 20 20 C 1.38815 * 119.99365 * 26.23555 * 18 17 16 21 21 N 1.31617 * 120.00398 * 16.91771 * 20 18 17 22 22 Si 1.86800 * 119.99899 * 196.91492 * 20 18 17 23 23 H 1.48498 * 109.47451 * 59.99867 * 22 20 18 24 24 H 1.48501 * 109.47152 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47209 * 300.00139 * 22 20 18 26 26 C 1.47155 * 118.03774 * 309.46114 * 17 16 14 27 27 C 1.53298 * 108.38233 * 50.53845 * 26 17 16 28 28 O 1.42952 * 109.22186 * 307.69589 * 27 26 17 29 29 H 1.08998 * 109.47331 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47024 * 120.00407 * 1 2 3 31 31 H 1.09006 * 109.46843 * 240.00027 * 1 2 3 32 32 H 1.09006 * 109.40033 * 222.28644 * 5 3 2 33 33 H 1.08995 * 109.33294 * 102.50154 * 5 3 2 34 34 H 1.08995 * 109.67107 * 289.16923 * 6 5 3 35 35 H 1.08994 * 109.67531 * 168.63281 * 6 5 3 36 36 H 1.09005 * 109.59989 * 52.23078 * 7 6 5 37 37 H 1.09003 * 109.59762 * 172.71237 * 7 6 5 38 38 H 0.96997 * 119.99971 * 359.97438 * 12 10 8 39 39 H 1.08998 * 109.47461 * 299.99641 * 13 12 10 40 40 H 1.08997 * 109.47112 * 60.00185 * 13 12 10 41 41 H 1.08995 * 109.68159 * 291.94830 * 16 14 13 42 42 H 1.08998 * 109.68264 * 52.46357 * 16 14 13 43 43 H 0.96996 * 120.00444 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.68091 * 170.25773 * 26 17 16 45 45 H 1.08995 * 109.68444 * 290.81453 * 26 17 16 46 46 H 1.09004 * 109.51131 * 67.62410 * 27 26 17 47 47 H 1.09002 * 109.50977 * 187.77023 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0899 1.1781 0.0000 4 8 1.4158 2.1854 0.0410 5 6 3.5838 1.3241 -0.0486 6 6 4.2493 0.0014 0.3397 7 6 3.5949 -1.1259 -0.4681 8 6 2.1481 -1.2875 0.0006 9 1 2.1399 -1.6993 1.0097 10 6 1.4278 -2.2339 -0.9249 11 8 0.7038 -1.7979 -1.7948 12 7 1.5881 -3.5649 -0.7859 13 6 0.8874 -4.4850 -1.6853 14 6 1.2405 -5.9271 -1.3157 15 1 0.9393 -6.1233 -0.2867 16 6 0.5083 -6.8907 -2.2567 17 7 1.0058 -8.2525 -2.0053 18 6 0.1397 -9.2899 -1.7842 19 1 0.4572 -10.1445 -1.2054 20 6 -1.1465 -9.2429 -2.3043 21 7 -1.4366 -8.3935 -3.2669 22 14 -2.4657 -10.3853 -1.6379 23 1 -2.6556 -10.1295 -0.1875 24 1 -3.7422 -10.1394 -2.3557 25 1 -2.0478 -11.7958 -1.8411 26 6 2.4617 -8.4666 -1.9980 27 6 3.0987 -7.4262 -1.0696 28 8 2.6507 -6.1221 -1.4466 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3633 -0.5139 0.8900 32 1 3.8942 2.1036 0.6472 33 1 3.8868 1.5990 -1.0589 34 1 4.1088 -0.1812 1.4050 35 1 5.3142 0.0457 0.1117 36 1 3.6101 -0.8725 -1.5282 37 1 4.1385 -2.0563 -0.3042 38 1 2.1674 -3.9136 -0.0904 39 1 -0.1883 -4.3379 -1.5895 40 1 1.1908 -4.2892 -2.7137 41 1 -0.5635 -6.8498 -2.0626 42 1 0.7047 -6.6128 -3.2922 43 1 -2.3354 -8.3604 -3.6300 44 1 2.6834 -9.4694 -1.6325 45 1 2.8553 -8.3478 -3.0074 46 1 2.8046 -7.6287 -0.0397 47 1 4.1841 -7.4775 -1.1559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035595421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:17 Heat of formation + Delta-G solvation = -84.335790 kcal Electronic energy + Delta-G solvation = -28609.387266 eV Core-core repulsion = 24600.191120 eV Total energy + Delta-G solvation = -4009.196146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.16393 -39.44965 -38.51520 -36.48366 -35.08918 -34.46970 -34.09253 -31.59578 -31.22583 -30.07397 -27.54974 -27.23370 -25.99427 -24.70351 -23.35835 -22.58222 -21.84569 -20.83656 -19.72512 -18.94846 -17.72406 -17.08399 -16.81417 -16.70978 -16.13521 -15.71432 -15.39498 -15.20298 -14.87573 -14.58044 -14.44144 -14.35185 -13.99695 -13.82362 -13.66036 -13.34592 -13.07823 -12.94816 -12.66023 -12.43341 -12.33743 -11.98074 -11.77059 -11.62324 -11.41843 -11.29940 -11.16396 -10.89958 -10.81067 -10.50448 -10.35304 -10.24912 -10.08767 -9.80518 -9.73510 -9.22028 -9.05570 -8.71638 -8.61631 -6.83719 -5.91486 -3.35520 2.35259 2.40720 2.73282 3.16827 3.30620 3.37065 3.37631 4.12537 4.18713 4.26089 4.33705 4.37641 4.38952 4.69771 4.81372 5.00783 5.09344 5.28460 5.29043 5.30855 5.37142 5.44440 5.45065 5.49266 5.51187 5.65891 5.74510 5.76704 5.84001 5.90004 5.97848 6.01907 6.10542 6.16512 6.26655 6.40812 6.52702 6.70087 6.97826 7.18647 7.38942 7.45039 7.63580 7.73539 7.93990 8.13403 8.25817 9.03537 9.66450 10.23003 11.16628 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.002690 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.620846 B =10407.560852 C =11345.176594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.585 5.585 3 C 0.519 3.481 4 O -0.556 6.556 5 C -0.136 4.136 6 C -0.121 4.121 7 C -0.128 4.128 8 C 0.129 3.871 9 H 0.097 0.903 10 C 0.500 3.500 11 O -0.527 6.527 12 N -0.712 5.712 13 C 0.132 3.868 14 C 0.055 3.945 15 H 0.056 0.944 16 C 0.153 3.847 17 N -0.594 5.594 18 C -0.259 4.259 19 H 0.069 0.931 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.906 3.094 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.108 3.892 27 C 0.051 3.949 28 O -0.391 6.391 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.403 0.597 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.031 0.969 43 H 0.257 0.743 44 H 0.062 0.938 45 H 0.027 0.973 46 H 0.043 0.957 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.219 13.071 9.212 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.317 5.317 3 C 0.308 3.692 4 O -0.434 6.434 5 C -0.175 4.175 6 C -0.159 4.159 7 C -0.166 4.166 8 C 0.021 3.979 9 H 0.115 0.885 10 C 0.284 3.716 11 O -0.404 6.404 12 N -0.363 5.363 13 C 0.009 3.991 14 C -0.005 4.005 15 H 0.074 0.926 16 C 0.026 3.974 17 N -0.318 5.318 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.735 3.265 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.208 1.208 26 C -0.018 4.018 27 C -0.027 4.027 28 O -0.310 6.310 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.238 0.762 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.291 14.030 8.426 19.883 hybrid contribution -0.620 -1.250 0.638 1.535 sum 10.672 12.780 9.065 18.957 Atomic orbital electron populations 1.22203 0.78888 1.04886 1.03214 1.46847 1.07994 1.04502 1.72397 1.20143 0.90982 0.82495 0.75611 1.90702 1.66467 1.35438 1.50813 1.21688 0.90996 0.99776 1.05068 1.21662 1.00557 0.93055 1.00582 1.21885 0.91953 1.01088 1.01680 1.20906 0.93246 0.84154 0.99613 0.88535 1.20663 0.82441 0.83153 0.85355 1.90665 1.38385 1.76819 1.34541 1.45967 1.48808 1.05337 1.36202 1.21470 0.96927 0.86477 0.94253 1.23155 0.82748 0.93957 1.00599 0.92560 1.21301 0.99116 0.82411 0.94581 1.44037 0.99526 1.04375 1.83848 1.19141 0.93261 0.99377 1.27040 0.91360 1.25064 0.99302 0.98926 0.96235 1.69999 1.20207 1.39207 1.25121 0.86326 0.81147 0.80474 0.78557 1.20935 1.21475 1.20784 1.21607 0.86410 0.96897 0.96881 1.23007 0.97889 0.83973 0.97877 1.87761 1.22683 1.31967 1.88590 0.89306 0.88707 0.92787 0.88000 0.88063 0.90716 0.89767 0.89993 0.88631 0.76235 0.89831 0.90563 0.88583 0.95061 0.93282 0.91949 0.95539 0.93838 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 9.73 59.85 0.58 1.21 16 2 N -0.59 -6.82 2.96 -176.50 -0.52 -7.34 16 3 C 0.52 6.29 7.47 -11.87 -0.09 6.20 16 4 O -0.56 -8.85 15.95 5.56 0.09 -8.76 16 5 C -0.14 -1.04 6.03 -28.10 -0.17 -1.21 16 6 C -0.12 -0.66 6.03 -26.51 -0.16 -0.82 16 7 C -0.13 -0.90 5.29 -26.59 -0.14 -1.04 16 8 C 0.13 1.20 3.14 -69.52 -0.22 0.98 16 9 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 10 C 0.50 6.26 6.47 -10.98 -0.07 6.19 16 11 O -0.53 -8.69 13.86 5.55 0.08 -8.61 16 12 N -0.71 -8.56 5.45 -60.29 -0.33 -8.88 16 13 C 0.13 2.02 5.37 -4.04 -0.02 2.00 16 14 C 0.05 0.95 2.86 -26.57 -0.08 0.88 16 15 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 16 C 0.15 3.42 4.73 -3.53 -0.02 3.40 16 17 N -0.59 -14.21 3.05 -171.83 -0.52 -14.74 16 18 C -0.26 -6.80 9.65 -15.06 -0.15 -6.95 16 19 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 21 N -0.90 -25.25 11.14 55.49 0.62 -24.63 16 22 Si 0.91 20.90 29.59 -169.99 -5.03 15.87 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.11 2.14 6.73 -3.53 -0.02 2.11 16 27 C 0.05 0.81 6.98 37.31 0.26 1.07 16 28 O -0.39 -6.55 10.14 -35.23 -0.36 -6.91 16 29 H 0.09 1.19 6.59 -51.93 -0.34 0.85 16 30 H 0.09 1.36 5.35 -51.93 -0.28 1.08 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.40 3.93 8.36 -40.82 -0.34 3.58 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.10 2.39 6.14 -51.93 -0.32 2.07 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -33.32 371.56 -8.33 -41.65 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.58 Total: 2.71 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -0.37 Total: 14.04 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.76 Total: -55.59 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.19 Total: -24.28 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.32 -8.33 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035595421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.682 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds