Wall clock time and date at job start Tue Mar 31 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33356 * 117.94425 * 2 1 4 4 O 1.21278 * 118.24495 * 2.19666 * 3 2 1 5 5 C 1.50175 * 123.50670 * 182.22570 * 3 2 1 6 6 C 1.53072 * 109.89427 * 342.41368 * 5 3 2 7 7 C 1.53349 * 108.42201 * 48.89867 * 6 5 3 8 8 C 1.45748 * 117.94972 * 179.97438 * 2 1 3 9 9 H 1.08996 * 109.30702 * 281.23783 * 8 2 1 10 10 C 1.50704 * 109.29991 * 40.61633 * 8 2 1 11 11 O 1.21286 * 120.00024 * 21.02947 * 10 8 2 12 12 N 1.34781 * 119.99932 * 201.03816 * 10 8 2 13 13 C 1.46504 * 119.99591 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.46566 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.51184 * 59.90135 * 14 13 12 16 16 C 1.53300 * 109.50823 * 180.02562 * 14 13 12 17 17 N 1.47146 * 108.38065 * 172.22627 * 16 14 13 18 18 C 1.36941 * 120.98559 * 129.44240 * 17 16 14 19 19 H 1.07996 * 120.00254 * 206.23781 * 18 17 16 20 20 C 1.38815 * 119.99365 * 26.23555 * 18 17 16 21 21 N 1.31617 * 120.00398 * 16.91771 * 20 18 17 22 22 Si 1.86800 * 119.99899 * 196.91492 * 20 18 17 23 23 H 1.48498 * 109.47451 * 59.99867 * 22 20 18 24 24 H 1.48501 * 109.47152 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47209 * 300.00139 * 22 20 18 26 26 C 1.47155 * 118.03774 * 309.46114 * 17 16 14 27 27 C 1.53298 * 108.38233 * 50.53845 * 26 17 16 28 28 O 1.42952 * 109.22186 * 307.69589 * 27 26 17 29 29 H 1.08998 * 109.47331 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47024 * 120.00407 * 1 2 3 31 31 H 1.09006 * 109.46843 * 240.00027 * 1 2 3 32 32 H 1.09006 * 109.40033 * 222.28644 * 5 3 2 33 33 H 1.08995 * 109.33294 * 102.50154 * 5 3 2 34 34 H 1.08995 * 109.67107 * 289.16923 * 6 5 3 35 35 H 1.08994 * 109.67531 * 168.63281 * 6 5 3 36 36 H 1.09005 * 109.59989 * 52.23078 * 7 6 5 37 37 H 1.09003 * 109.59762 * 172.71237 * 7 6 5 38 38 H 0.96997 * 119.99971 * 359.97438 * 12 10 8 39 39 H 1.08998 * 109.47461 * 299.99641 * 13 12 10 40 40 H 1.08997 * 109.47112 * 60.00185 * 13 12 10 41 41 H 1.08995 * 109.68159 * 291.94830 * 16 14 13 42 42 H 1.08998 * 109.68264 * 52.46357 * 16 14 13 43 43 H 0.96996 * 120.00444 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.68091 * 170.25773 * 26 17 16 45 45 H 1.08995 * 109.68444 * 290.81453 * 26 17 16 46 46 H 1.09004 * 109.51131 * 67.62410 * 27 26 17 47 47 H 1.09002 * 109.50977 * 187.77023 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0899 1.1781 0.0000 4 8 1.4158 2.1854 0.0410 5 6 3.5838 1.3241 -0.0486 6 6 4.2493 0.0014 0.3397 7 6 3.5949 -1.1259 -0.4681 8 6 2.1481 -1.2875 0.0006 9 1 2.1399 -1.6993 1.0097 10 6 1.4278 -2.2339 -0.9249 11 8 0.7038 -1.7979 -1.7948 12 7 1.5881 -3.5649 -0.7859 13 6 0.8874 -4.4850 -1.6853 14 6 1.2405 -5.9271 -1.3157 15 1 0.9393 -6.1233 -0.2867 16 6 0.5083 -6.8907 -2.2567 17 7 1.0058 -8.2525 -2.0053 18 6 0.1397 -9.2899 -1.7842 19 1 0.4572 -10.1445 -1.2054 20 6 -1.1465 -9.2429 -2.3043 21 7 -1.4366 -8.3935 -3.2669 22 14 -2.4657 -10.3853 -1.6379 23 1 -2.6556 -10.1295 -0.1875 24 1 -3.7422 -10.1394 -2.3557 25 1 -2.0478 -11.7958 -1.8411 26 6 2.4617 -8.4666 -1.9980 27 6 3.0987 -7.4262 -1.0696 28 8 2.6507 -6.1221 -1.4466 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3633 -0.5139 0.8900 32 1 3.8942 2.1036 0.6472 33 1 3.8868 1.5990 -1.0589 34 1 4.1088 -0.1812 1.4050 35 1 5.3142 0.0457 0.1117 36 1 3.6101 -0.8725 -1.5282 37 1 4.1385 -2.0563 -0.3042 38 1 2.1674 -3.9136 -0.0904 39 1 -0.1883 -4.3379 -1.5895 40 1 1.1908 -4.2892 -2.7137 41 1 -0.5635 -6.8498 -2.0626 42 1 0.7047 -6.6128 -3.2922 43 1 -2.3354 -8.3604 -3.6300 44 1 2.6834 -9.4694 -1.6325 45 1 2.8553 -8.3478 -3.0074 46 1 2.8046 -7.6287 -0.0397 47 1 4.1841 -7.4775 -1.1559 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035595421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:16 Heat of formation + Delta-G solvation = -109.157632 kcal Electronic energy + Delta-G solvation = -28610.463622 eV Core-core repulsion = 24600.191120 eV Total energy + Delta-G solvation = -4010.272502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06682 -40.58992 -39.89756 -37.37252 -36.48813 -35.94298 -34.90750 -33.26435 -32.71525 -31.02212 -29.05409 -28.18083 -27.37801 -25.77546 -25.00722 -23.32765 -23.19627 -21.94723 -21.28328 -19.71111 -18.95322 -18.62733 -17.79062 -17.59656 -17.45658 -17.05710 -16.67630 -16.39056 -16.14028 -15.92006 -15.52453 -15.40382 -15.21454 -15.01720 -14.80239 -14.60505 -14.40390 -14.31640 -13.94774 -13.41971 -13.19237 -13.14635 -12.98788 -12.81057 -12.64423 -12.58999 -12.52445 -12.19621 -12.11396 -11.98462 -11.86175 -11.81685 -11.32993 -11.23786 -10.81349 -10.68483 -10.54149 -10.20150 -9.70460 -8.75376 -7.91828 -5.39115 1.38775 1.46438 1.48375 1.49113 1.55582 1.83484 2.19272 2.47695 2.79759 3.22763 3.45181 3.50291 3.57260 3.66588 3.86222 4.01762 4.07422 4.09425 4.21666 4.29114 4.36545 4.47362 4.53555 4.57001 4.59773 4.62160 4.69671 4.78725 4.83413 4.86481 4.93537 4.97421 5.00822 5.05707 5.09069 5.24419 5.24738 5.31311 5.36498 5.53640 5.59996 6.26714 6.30986 6.33388 6.50117 7.03616 7.05399 7.17011 7.74851 8.27632 9.13581 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.002690 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.620846 B =10407.560852 C =11345.176594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.589 5.589 3 C 0.509 3.491 4 O -0.604 6.604 5 C -0.132 4.132 6 C -0.110 4.110 7 C -0.126 4.126 8 C 0.132 3.868 9 H 0.133 0.867 10 C 0.499 3.501 11 O -0.572 6.572 12 N -0.697 5.697 13 C 0.144 3.856 14 C 0.078 3.922 15 H 0.067 0.933 16 C 0.158 3.842 17 N -0.615 5.615 18 C -0.266 4.266 19 H 0.075 0.925 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.100 3.900 27 C 0.059 3.941 28 O -0.386 6.386 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.122 0.878 38 H 0.419 0.581 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.065 0.935 42 H -0.002 1.002 43 H 0.251 0.749 44 H 0.071 0.929 45 H 0.014 0.986 46 H 0.056 0.944 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.111 12.645 11.856 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.320 5.320 3 C 0.300 3.700 4 O -0.486 6.486 5 C -0.171 4.171 6 C -0.147 4.147 7 C -0.164 4.164 8 C 0.025 3.975 9 H 0.151 0.849 10 C 0.286 3.714 11 O -0.452 6.452 12 N -0.350 5.350 13 C 0.019 3.981 14 C 0.018 3.982 15 H 0.085 0.915 16 C 0.031 3.969 17 N -0.339 5.339 18 C -0.395 4.395 19 H 0.092 0.908 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.797 3.203 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.201 1.201 26 C -0.026 4.026 27 C -0.019 4.019 28 O -0.305 6.305 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.257 0.743 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.016 0.984 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.032 0.968 46 H 0.074 0.926 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.259 13.568 11.113 22.603 hybrid contribution -1.482 -1.172 -0.252 1.906 sum 12.777 12.397 10.861 20.854 Atomic orbital electron populations 1.22049 0.80167 1.03745 1.03038 1.47020 1.07618 1.05570 1.71771 1.21067 0.92840 0.81744 0.74356 1.90675 1.67919 1.36999 1.53049 1.21765 0.87517 1.01911 1.05902 1.21674 1.01481 0.90486 1.01086 1.21979 0.90365 1.03166 1.00920 1.21189 0.93773 0.82120 1.00419 0.84914 1.21315 0.81708 0.83322 0.85099 1.90669 1.40391 1.77509 1.36627 1.45715 1.48573 1.04840 1.35844 1.21077 0.96707 0.86230 0.94035 1.22724 0.82638 0.93428 0.99372 0.91465 1.21092 0.98172 0.83506 0.94108 1.44353 1.01252 1.04399 1.83916 1.19519 0.93849 0.99939 1.26243 0.90783 1.25831 1.01366 1.00722 0.96702 1.70170 1.20069 1.41200 1.26726 0.85320 0.78140 0.78842 0.78027 1.20003 1.22352 1.20064 1.21859 0.84175 0.99115 0.97419 1.23074 0.99753 0.81902 0.97161 1.87781 1.21631 1.32493 1.88618 0.90909 0.90837 0.90934 0.86716 0.87508 0.89149 0.87032 0.91722 0.85957 0.74318 0.90837 0.92426 0.91667 0.98441 0.94001 0.91049 0.96815 0.92574 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.35 9.73 127.77 1.24 2.59 16 2 N -0.59 -13.13 2.96 -831.51 -2.46 -15.59 16 3 C 0.51 11.94 7.47 87.71 0.66 12.59 16 4 O -0.60 -19.65 15.95 -3.02 -0.05 -19.69 16 5 C -0.13 -1.69 6.03 29.71 0.18 -1.51 16 6 C -0.11 -0.71 6.03 30.74 0.19 -0.52 16 7 C -0.13 -1.31 5.29 30.69 0.16 -1.14 16 8 C 0.13 2.10 3.14 44.37 0.14 2.24 16 9 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 10 C 0.50 11.89 6.47 87.66 0.57 12.46 16 11 O -0.57 -19.25 13.86 -3.05 -0.04 -19.29 16 12 N -0.70 -15.41 5.45 -463.03 -2.52 -17.93 16 13 C 0.14 4.41 5.37 86.38 0.46 4.87 16 14 C 0.08 2.63 2.86 30.70 0.09 2.72 16 15 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 16 C 0.16 7.28 4.73 86.36 0.41 7.69 16 17 N -0.61 -29.49 3.05 -697.54 -2.13 -31.62 16 18 C -0.27 -13.98 9.65 84.03 0.81 -13.17 16 19 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 20 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 21 N -0.94 -54.37 11.14 21.65 0.24 -54.13 16 22 Si 0.97 43.40 29.59 68.60 2.03 45.43 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 C 0.10 3.79 6.73 86.35 0.58 4.37 16 27 C 0.06 1.66 6.98 72.08 0.50 2.16 16 28 O -0.39 -11.90 10.14 -148.98 -1.51 -13.41 16 29 H 0.07 2.07 6.59 -2.39 -0.02 2.06 16 30 H 0.07 2.22 5.35 -2.38 -0.01 2.21 16 31 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 0.38 8.13 -2.39 -0.02 0.36 16 35 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 37 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.42 6.60 8.36 -92.71 -0.77 5.82 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 3.40 6.14 -2.39 -0.01 3.38 16 42 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 44 H 0.07 2.54 7.96 -2.38 -0.02 2.52 16 45 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.12 2.56 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -77.13 371.56 0.16 -76.96 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.20 Total: 16.26 kcal Atomic # 6 Polarization: 26.61 SS G_CDS: 6.41 Total: 33.01 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -6.87 Total: -119.27 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -1.60 Total: -52.40 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -77.13 0.16 -76.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035595421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.194 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds