Wall clock time and date at job start Tue Mar 31 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47159 * 2 1 4 4 C 1.34228 * 117.00376 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99858 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00171 * 179.97438 * 4 3 2 7 7 C 1.53463 * 109.31411 * 295.63948 * 6 4 3 8 8 N 1.47167 * 106.65704 * 267.64400 * 7 6 4 9 9 C 1.34772 * 125.72409 * 180.75747 * 8 7 6 10 10 O 1.21284 * 120.00513 * 0.04576 * 9 8 7 11 11 C 1.50705 * 119.99840 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47167 * 40.00489 * 11 9 8 13 13 N 1.46900 * 109.47026 * 159.99879 * 11 9 8 14 14 C 1.50691 * 109.47367 * 280.00002 * 11 9 8 15 15 H 1.08004 * 119.99690 * 0.02562 * 14 11 9 16 16 C 1.37873 * 120.00063 * 179.97438 * 14 11 9 17 17 N 1.31513 * 120.00064 * 359.97438 * 16 14 11 18 18 Si 1.86809 * 119.99911 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47085 * 59.99702 * 18 16 14 20 20 H 1.48495 * 109.47042 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46875 * 299.99721 * 18 16 14 22 22 C 1.47582 * 108.55759 * 0.81820 * 8 7 6 23 23 C 1.54121 * 108.87941 * 182.93787 * 6 4 3 24 24 H 1.08996 * 112.59086 * 318.15099 * 23 6 4 25 25 C 1.52996 * 110.59629 * 191.45716 * 23 6 4 26 26 N 1.46483 * 110.92337 * 53.00133 * 25 23 6 27 27 C 1.47156 * 110.16102 * 296.25096 * 26 25 23 28 28 C 1.51218 * 109.35280 * 59.29935 * 6 4 3 29 29 H 1.09003 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47383 * 299.99329 * 1 2 3 31 31 H 1.09000 * 109.47604 * 60.00356 * 1 2 3 32 32 H 1.09000 * 109.47558 * 240.00162 * 2 1 3 33 33 H 1.09000 * 109.47604 * 119.99644 * 2 1 3 34 34 H 1.09004 * 110.02312 * 26.92952 * 7 6 4 35 35 H 1.09000 * 110.02641 * 148.33943 * 7 6 4 36 36 H 1.00899 * 110.99839 * 59.99925 * 13 11 9 37 37 H 1.00894 * 110.99856 * 183.95710 * 13 11 9 38 38 H 0.96999 * 119.99565 * 179.97438 * 17 16 14 39 39 H 1.08997 * 110.42507 * 216.42079 * 22 8 7 40 40 H 1.09000 * 110.52059 * 94.00146 * 22 8 7 41 41 H 1.09002 * 109.18061 * 292.64131 * 25 23 6 42 42 H 1.08997 * 109.17829 * 173.35445 * 25 23 6 43 43 H 1.00899 * 111.00268 * 59.60860 * 26 25 23 44 44 H 1.09001 * 109.70923 * 185.19432 * 27 26 25 45 45 H 1.08998 * 109.71046 * 305.76965 * 27 26 25 46 46 H 1.08997 * 109.14291 * 51.20919 * 28 6 4 47 47 H 1.09002 * 109.14199 * 292.07273 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 -0.0012 7 6 3.5350 3.6456 -1.3069 8 7 4.6310 3.4021 -2.2584 9 6 4.6930 3.8650 -3.5226 10 8 3.7925 4.5476 -3.9633 11 6 5.8814 3.5349 -4.3885 12 1 6.1772 2.4994 -4.2201 13 7 5.5238 3.7182 -5.8014 14 6 7.0276 4.4482 -4.0379 15 1 6.9076 5.1930 -3.2649 16 6 8.2297 4.3323 -4.7030 17 7 8.3762 3.4245 -5.6431 18 14 9.6508 5.4641 -4.2678 19 1 10.0118 5.2786 -2.8394 20 1 10.8218 5.1388 -5.1211 21 1 9.2482 6.8749 -4.4975 22 6 5.6502 2.5647 -1.5966 23 6 5.4570 2.8417 -0.0764 24 1 5.8592 2.0547 0.5614 25 6 6.0956 4.2034 0.2042 26 7 5.6036 4.7618 1.4659 27 6 4.1577 5.0205 1.3765 28 6 3.4395 3.6793 1.2256 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.6047 3.2313 -1.6955 35 1 3.4233 4.7157 -1.1322 36 1 5.2456 4.6709 -5.9833 37 1 6.2831 3.4416 -6.4054 38 1 9.2219 3.3433 -6.1113 39 1 6.6502 2.8612 -1.9131 40 1 5.4797 1.5106 -1.8157 41 1 5.8526 4.8873 -0.6090 42 1 7.1777 4.0863 0.2623 43 1 5.8140 4.1487 2.2392 44 1 3.8169 5.5200 2.2834 45 1 3.9496 5.6490 0.5106 46 1 3.6302 3.0703 2.1092 47 1 2.3673 3.8558 1.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160810539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:17 Heat of formation + Delta-G solvation = -117.354182 kcal Electronic energy + Delta-G solvation = -30126.126583 eV Core-core repulsion = 26115.498652 eV Total energy + Delta-G solvation = -4010.627931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64200 -39.59312 -38.12904 -36.69471 -35.29834 -34.15785 -32.84167 -31.61338 -31.07133 -30.86043 -27.78704 -26.37741 -25.05931 -24.80483 -23.27100 -22.58560 -21.74933 -21.52718 -19.31167 -18.56536 -17.74684 -16.95482 -16.84854 -16.65766 -16.35655 -15.60915 -15.08433 -14.92113 -14.61023 -14.33048 -14.30444 -14.03165 -13.59857 -13.40336 -13.15648 -12.95641 -12.89060 -12.71320 -12.35924 -12.27809 -12.13769 -12.07453 -11.81038 -11.77754 -11.73289 -11.28773 -11.21929 -11.05334 -10.90062 -10.76152 -10.68592 -10.48524 -10.40019 -10.36933 -10.02622 -8.83792 -8.60283 -8.50986 -8.03295 -7.24794 -6.20065 -4.38868 2.09989 2.45820 3.19705 3.25464 3.27393 3.57268 3.68817 4.10203 4.19540 4.27462 4.32142 4.52655 4.70422 4.72006 4.76686 4.91011 5.03466 5.03892 5.08666 5.22054 5.24294 5.39260 5.44186 5.52065 5.53786 5.62747 5.72353 5.73190 5.82016 5.87112 5.95385 6.04705 6.14073 6.23991 6.31275 6.34506 6.61323 6.84986 6.87646 7.14418 7.30308 7.62393 7.63925 7.85715 8.19506 8.53456 8.83373 9.10456 9.16743 9.35985 10.77661 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.004438 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.106381 B = 6307.626890 C = 7278.809647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.475 3.525 5 O -0.499 6.499 6 C -0.053 4.053 7 C 0.123 3.877 8 N -0.623 5.623 9 C 0.550 3.450 10 O -0.554 6.554 11 C 0.207 3.793 12 H 0.056 0.944 13 N -0.842 5.842 14 C -0.548 4.548 15 H 0.058 0.942 16 C 0.072 3.928 17 N -0.888 5.888 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.107 3.893 23 C -0.119 4.119 24 H 0.107 0.893 25 C 0.060 3.940 26 N -0.678 5.678 27 C 0.055 3.945 28 C -0.139 4.139 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.324 0.676 37 H 0.358 0.642 38 H 0.269 0.731 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.338 0.662 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 -4.080 16.136 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.317 3.683 5 O -0.386 6.386 6 C -0.055 4.055 7 C -0.001 4.001 8 N -0.360 5.360 9 C 0.342 3.658 10 O -0.431 6.431 11 C 0.094 3.906 12 H 0.074 0.926 13 N -0.373 5.373 14 C -0.588 4.588 15 H 0.076 0.924 16 C -0.132 4.132 17 N -0.526 5.526 18 Si 0.729 3.271 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.017 4.017 23 C -0.139 4.139 24 H 0.125 0.875 25 C -0.069 4.069 26 N -0.305 5.305 27 C -0.074 4.074 28 C -0.179 4.179 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.175 0.825 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.155 0.845 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.262 -3.958 15.620 19.104 hybrid contribution 1.219 -0.114 0.263 1.252 sum -9.043 -4.073 15.883 18.725 Atomic orbital electron populations 1.21801 0.92548 1.02939 1.03609 1.23036 0.95437 0.80235 1.02593 1.86497 1.24423 1.32352 1.83886 1.23549 0.80607 0.92273 0.71901 1.90653 1.60344 1.42763 1.44804 1.20904 0.97019 0.89473 0.98073 1.21630 0.91993 1.00235 0.86231 1.48600 1.20873 1.53874 1.12695 1.21543 0.88153 0.76934 0.79168 1.90541 1.40843 1.39253 1.72456 1.18821 0.87106 0.98016 0.86641 0.92583 1.59111 1.44565 1.28137 1.05515 1.21469 0.96602 1.18958 1.21776 0.92371 1.24976 0.98518 0.95103 0.94583 1.69735 1.26337 1.33065 1.23434 0.86495 0.81028 0.80984 0.78639 1.19850 1.21097 1.20085 1.22539 0.94840 0.95022 0.89314 1.23130 0.91297 1.00865 0.98646 0.87476 1.22140 0.99893 0.92507 0.92406 1.60954 1.13839 1.50186 1.05545 1.22167 0.87290 0.94827 1.03163 1.21771 1.02433 0.98419 0.95238 0.90261 0.91540 0.91273 0.91117 0.91354 0.91147 0.90369 0.86577 0.82514 0.92110 0.87711 0.91641 0.89422 0.89542 0.84456 0.89842 0.90000 0.91123 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.35 -4.52 9.87 -39.25 -0.39 -4.91 16 4 C 0.47 6.69 6.04 36.00 0.22 6.91 16 5 O -0.50 -8.04 14.52 -18.75 -0.27 -8.32 16 6 C -0.05 -0.69 0.59 -155.73 -0.09 -0.78 16 7 C 0.12 1.95 5.36 -3.44 -0.02 1.94 16 8 N -0.62 -12.00 2.87 -170.29 -0.49 -12.49 16 9 C 0.55 13.01 7.04 -10.99 -0.08 12.94 16 10 O -0.55 -14.41 16.58 5.55 0.09 -14.32 16 11 C 0.21 5.22 2.40 -70.02 -0.17 5.06 16 12 H 0.06 1.49 7.68 -51.93 -0.40 1.09 16 13 N -0.84 -21.43 8.94 -6.65 -0.06 -21.49 16 14 C -0.55 -14.17 7.91 -34.45 -0.27 -14.44 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 17 N -0.89 -23.56 11.54 55.43 0.64 -22.92 16 18 Si 0.90 20.21 29.54 -169.99 -5.02 15.18 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.11 1.84 5.27 -2.00 -0.01 1.83 16 23 C -0.12 -1.60 2.86 -88.59 -0.25 -1.86 16 24 H 0.11 1.38 7.52 -51.93 -0.39 0.99 16 25 C 0.06 0.80 5.46 -4.05 -0.02 0.78 16 26 N -0.68 -7.47 6.93 -113.96 -0.79 -8.26 16 27 C 0.06 0.54 6.45 -3.74 -0.02 0.52 16 28 C -0.14 -1.37 4.65 -27.68 -0.13 -1.50 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 33 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 34 H 0.07 1.17 7.61 -51.93 -0.40 0.78 16 35 H 0.08 1.22 6.48 -51.93 -0.34 0.88 16 36 H 0.32 8.31 8.57 -39.29 -0.34 7.98 16 37 H 0.36 9.33 7.08 -39.29 -0.28 9.05 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 39 H 0.10 1.96 6.82 -51.93 -0.35 1.61 16 40 H 0.07 1.18 7.33 -51.93 -0.38 0.80 16 41 H 0.09 1.41 7.12 -51.93 -0.37 1.04 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.34 3.13 8.79 -39.29 -0.35 2.78 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.93 6.68 -51.93 -0.35 0.58 16 46 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -30.30 368.94 -8.34 -38.64 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -7.28 Total: 20.06 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -0.33 Total: 13.25 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.70 Total: -65.15 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.57 Total: -27.54 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.30 -8.34 -38.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160810539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.716 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds