Wall clock time and date at job start Tue Mar 31 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47406 * 2 1 4 4 C 1.34769 * 120.00331 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99870 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00184 * 179.97438 * 4 3 2 7 7 N 1.46908 * 109.47174 * 180.02562 * 6 4 3 8 8 C 1.48060 * 110.99976 * 170.00490 * 7 6 4 9 9 C 1.53384 * 86.02485 * 222.76679 * 8 7 6 10 10 C 1.48058 * 110.99936 * 70.55233 * 7 6 4 11 11 C 1.52558 * 113.83779 * 138.14676 * 9 8 7 12 12 N 1.46269 * 109.56791 * 176.50128 * 11 9 8 13 13 C 1.46506 * 118.71040 * 163.90603 * 12 11 9 14 14 C 1.53002 * 109.47035 * 90.00181 * 13 12 11 15 15 C 1.50696 * 109.47300 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46691 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47025 * 120.00050 * 19 17 15 22 22 H 1.48500 * 109.46740 * 240.00408 * 19 17 15 23 23 C 1.33712 * 122.57401 * 344.18691 * 12 11 9 24 24 O 1.21279 * 118.38756 * 182.95635 * 23 12 11 25 25 C 1.50142 * 123.25140 * 2.72842 * 23 12 11 26 26 O 1.42686 * 113.78571 * 268.80551 * 9 8 7 27 27 H 1.08998 * 109.47106 * 60.00346 * 1 2 3 28 28 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47080 * 300.00164 * 1 2 3 30 30 H 1.09003 * 109.47389 * 239.99544 * 2 1 3 31 31 H 1.09006 * 109.46541 * 119.99917 * 2 1 3 32 32 H 0.96998 * 119.99810 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.46777 * 60.00535 * 6 4 3 34 34 H 1.08997 * 109.47725 * 300.00368 * 6 4 3 35 35 H 1.09004 * 113.78388 * 108.48857 * 8 7 6 36 36 H 1.09003 * 113.78419 * 337.04726 * 8 7 6 37 37 H 1.09000 * 113.78311 * 22.95106 * 10 7 6 38 38 H 1.08998 * 113.78362 * 251.50942 * 10 7 6 39 39 H 1.08994 * 109.45411 * 56.46840 * 11 9 8 40 40 H 1.09003 * 109.45107 * 296.53323 * 11 9 8 41 41 H 1.09004 * 109.47073 * 209.99864 * 13 12 11 42 42 H 1.09000 * 109.47212 * 329.99946 * 13 12 11 43 43 H 1.09004 * 109.46930 * 299.99770 * 14 13 12 44 44 H 1.09004 * 109.47059 * 59.99372 * 14 13 12 45 45 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 46 46 H 1.08998 * 109.48637 * 222.45655 * 25 23 12 47 47 H 1.08998 * 109.04717 * 102.85492 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8458 3.0482 -0.0001 7 7 5.3149 3.0482 0.0001 8 6 5.8455 4.4094 -0.2404 9 6 6.8562 3.7344 -1.1762 10 6 5.8456 2.5874 -1.3031 11 6 7.0933 4.4933 -2.4781 12 7 8.1284 3.8158 -3.2586 13 6 8.2697 4.1480 -4.6785 14 6 9.2562 5.3069 -4.8354 15 6 9.4022 5.6482 -6.2959 16 1 8.8471 5.0937 -7.0381 17 6 10.2442 6.6684 -6.6848 18 7 10.9204 7.3433 -5.7810 19 14 10.4245 7.0919 -8.4952 20 1 9.5634 6.1907 -9.3024 21 1 10.0125 8.5011 -8.7173 22 1 11.8415 6.9198 -8.9049 23 6 8.9470 2.9013 -2.7282 24 8 9.8139 2.4265 -3.4310 25 6 8.8495 2.4364 -1.3038 26 8 8.0738 3.3593 -0.5338 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.3881 2.1184 -0.0004 33 1 3.4821 3.5625 0.8895 34 1 3.4829 3.5616 -0.8904 35 1 6.2983 4.8665 0.6395 36 1 5.1456 5.0700 -0.7522 37 1 5.1457 2.7076 -2.1300 38 1 6.2984 1.5966 -1.2677 39 1 7.4157 5.5097 -2.2523 40 1 6.1678 4.5257 -3.0531 41 1 8.6420 3.2782 -5.2198 42 1 7.2999 4.4392 -5.0818 43 1 8.8840 6.1768 -4.2941 44 1 10.2261 5.0157 -4.4319 45 1 11.5132 8.0608 -6.0545 46 1 9.8495 2.3608 -0.8768 47 1 8.3721 1.4568 -1.2813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273698430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:50 Heat of formation + Delta-G solvation = -64.951368 kcal Electronic energy + Delta-G solvation = -28203.136753 eV Core-core repulsion = 24194.781178 eV Total energy + Delta-G solvation = -4008.355575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46600 -39.97582 -38.94813 -36.60878 -35.58963 -35.39028 -33.06354 -31.86360 -30.64214 -29.93411 -28.00908 -27.04886 -26.41888 -24.51479 -24.18631 -22.78083 -21.57120 -20.80474 -20.12669 -18.43411 -17.63212 -17.30672 -16.86966 -16.51171 -16.29129 -16.00724 -15.81021 -15.49827 -15.17885 -14.87811 -14.53190 -14.35733 -14.15047 -13.92865 -13.42963 -13.16009 -13.01196 -12.87588 -12.85275 -12.66439 -12.35709 -12.31629 -12.25104 -11.98871 -11.71982 -11.46692 -11.31227 -10.99897 -10.89196 -10.64272 -10.22894 -10.06764 -9.89590 -9.82354 -9.48123 -9.31062 -9.14143 -8.89538 -8.35575 -8.09658 -6.00308 -4.03507 2.33596 2.67321 2.92945 3.17524 3.31268 3.37069 3.39429 3.43235 3.65722 4.16253 4.26205 4.33888 4.46361 4.55553 4.60233 4.70527 4.76870 4.82575 4.85520 4.97266 4.99952 5.18855 5.23846 5.33978 5.35711 5.40456 5.42901 5.46614 5.54996 5.57624 5.63799 5.76194 5.94241 6.02478 6.06695 6.49982 6.51144 6.71752 6.85404 6.93189 7.10193 7.60155 7.72469 7.90949 7.93802 8.00223 8.35783 8.54076 9.03269 9.60166 11.11147 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.002468 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.134158 B =11343.265775 C =11900.197351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.737 5.737 4 C 0.512 3.488 5 O -0.518 6.518 6 C -0.002 4.002 7 N -0.449 5.449 8 C 0.025 3.975 9 C 0.071 3.929 10 C -0.008 4.008 11 C 0.101 3.899 12 N -0.597 5.597 13 C 0.114 3.886 14 C 0.014 3.986 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.480 3.520 24 O -0.538 6.538 25 C 0.052 3.948 26 O -0.334 6.334 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.130 0.870 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.115 -8.704 15.211 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.391 5.391 4 C 0.298 3.702 5 O -0.391 6.391 6 C -0.134 4.134 7 N -0.172 5.172 8 C -0.104 4.104 9 C 0.030 3.970 10 C -0.136 4.136 11 C -0.023 4.023 12 N -0.330 5.330 13 C -0.007 4.007 14 C -0.024 4.024 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.267 3.733 24 O -0.416 6.416 25 C -0.028 4.028 26 O -0.252 6.252 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.148 0.852 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.749 -9.805 15.660 28.538 hybrid contribution -0.680 1.094 -1.872 2.273 sum -22.430 -8.711 13.788 27.732 Atomic orbital electron populations 1.22006 0.94389 1.03336 1.02515 1.21284 0.94197 0.82933 1.02494 1.46058 1.07136 1.08994 1.76955 1.20508 0.82098 0.91442 0.76202 1.90742 1.55060 1.45983 1.47361 1.22649 0.92464 0.94525 1.03782 1.68604 1.05511 1.12051 1.30987 1.24047 0.94567 0.91911 0.99834 1.22904 0.86093 0.95445 0.92602 1.24514 0.96886 1.01035 0.91207 1.21957 0.92330 0.97427 0.90624 1.47662 1.33436 1.39545 1.12358 1.21954 1.00578 1.00888 0.77257 1.19355 0.94363 0.91580 0.97070 1.21119 1.25820 1.16769 0.92140 0.92514 1.25011 0.95554 0.96226 0.97596 1.69986 1.27969 1.22172 1.33004 0.86498 0.77983 0.78066 0.85218 1.19709 1.21033 1.20956 1.20689 0.81980 0.80153 0.90493 1.90759 1.33378 1.56393 1.61031 1.22804 0.98340 0.93540 0.88067 1.88099 1.30771 1.63245 1.43074 0.91935 0.90739 0.91958 0.91517 0.91488 0.76664 0.87341 0.90986 0.87222 0.89132 0.90327 0.88072 0.90009 0.89909 0.90638 0.91890 0.96675 0.95865 0.93015 0.85206 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 10.03 37.16 0.37 -0.17 16 2 C 0.11 0.70 6.39 -4.04 -0.03 0.68 16 3 N -0.74 -4.55 5.56 -60.29 -0.33 -4.88 16 4 C 0.51 4.85 7.64 -10.99 -0.08 4.77 16 5 O -0.52 -7.32 15.55 5.56 0.09 -7.24 16 6 C 0.00 -0.02 5.31 -4.97 -0.03 -0.04 16 7 N -0.45 -4.69 5.95 -242.41 -1.44 -6.13 16 8 C 0.03 0.23 7.38 -2.99 -0.02 0.20 16 9 C 0.07 0.87 1.16 -90.52 -0.10 0.76 16 10 C -0.01 -0.09 5.86 -2.99 -0.02 -0.11 16 11 C 0.10 1.39 5.88 -4.39 -0.03 1.36 16 12 N -0.60 -10.97 2.84 -174.68 -0.50 -11.47 16 13 C 0.11 2.44 5.21 -4.04 -0.02 2.42 16 14 C 0.01 0.38 5.29 -27.88 -0.15 0.23 16 15 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.48 9.20 7.57 -11.73 -0.09 9.11 16 24 O -0.54 -12.60 16.33 5.56 0.09 -12.51 16 25 C 0.05 0.77 6.65 35.74 0.24 1.01 16 26 O -0.33 -4.86 10.66 -35.23 -0.38 -5.24 16 27 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.40 1.22 8.47 -40.82 -0.35 0.88 16 33 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.37 7.69 -51.93 -0.40 -0.03 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.56 7.75 -51.93 -0.40 0.16 16 37 H 0.08 0.80 7.55 -51.93 -0.39 0.41 16 38 H 0.10 1.38 6.96 -51.93 -0.36 1.01 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 41 H 0.08 1.74 7.28 -51.93 -0.38 1.36 16 42 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.13 1.78 8.14 -51.93 -0.42 1.35 16 47 H 0.09 1.15 7.15 -51.93 -0.37 0.78 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -38.20 384.18 -8.99 -47.19 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.66 Total: -2.39 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.36 Total: 6.57 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -1.54 Total: -49.07 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.20 Total: -24.99 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.20 -8.99 -47.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273698430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.759 kcal (2) G-P(sol) polarization free energy of solvation -38.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds