Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21286 * 119.99905 * 2 1 4 4 N 1.34776 * 119.99786 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99436 * 180.02562 * 4 2 1 6 6 C 1.53009 * 109.46881 * 179.97438 * 5 4 2 7 7 N 1.46893 * 109.47135 * 179.97438 * 6 5 4 8 8 C 1.48054 * 111.00150 * 170.00056 * 7 6 5 9 9 C 1.53398 * 86.02491 * 222.77488 * 8 7 6 10 10 C 1.48062 * 110.99861 * 70.54686 * 7 6 5 11 11 C 1.52563 * 113.80509 * 268.71612 * 9 8 7 12 12 N 1.46271 * 109.56650 * 273.97854 * 11 9 8 13 13 C 1.46503 * 118.71402 * 163.92105 * 12 11 9 14 14 C 1.52998 * 109.47013 * 90.00177 * 13 12 11 15 15 C 1.50699 * 109.47172 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99774 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00172 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00412 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00098 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47078 * 89.99824 * 19 17 15 21 21 H 1.48499 * 109.47086 * 210.00036 * 19 17 15 22 22 H 1.48497 * 109.46735 * 330.00014 * 19 17 15 23 23 C 1.33712 * 122.56694 * 343.92231 * 12 11 9 24 24 O 1.21282 * 118.37931 * 183.25932 * 23 12 11 25 25 C 1.50163 * 123.24130 * 3.23823 * 23 12 11 26 26 O 1.42681 * 113.76711 * 138.11412 * 9 8 7 27 27 H 1.08998 * 109.47217 * 239.99742 * 1 2 3 28 28 H 1.09003 * 109.47166 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47112 * 120.00061 * 1 2 3 30 30 H 0.96997 * 120.00501 * 359.97438 * 4 2 1 31 31 H 1.08998 * 109.47530 * 59.99910 * 5 4 2 32 32 H 1.09000 * 109.47042 * 299.99244 * 5 4 2 33 33 H 1.09007 * 109.46813 * 59.99648 * 6 5 4 34 34 H 1.08997 * 109.46838 * 300.00064 * 6 5 4 35 35 H 1.08993 * 113.78984 * 108.49572 * 8 7 6 36 36 H 1.09002 * 113.78491 * 337.05011 * 8 7 6 37 37 H 1.09001 * 113.78482 * 22.95195 * 10 7 6 38 38 H 1.09007 * 113.78819 * 251.50526 * 10 7 6 39 39 H 1.08997 * 109.45597 * 34.01159 * 11 9 8 40 40 H 1.09004 * 109.44959 * 153.94964 * 11 9 8 41 41 H 1.08996 * 109.46694 * 210.00179 * 13 12 11 42 42 H 1.09000 * 109.47017 * 330.00267 * 13 12 11 43 43 H 1.09004 * 109.47037 * 300.00074 * 14 13 12 44 44 H 1.08996 * 109.47281 * 59.99695 * 14 13 12 45 45 H 0.96995 * 120.00465 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.35284 * 222.12682 * 25 23 12 47 47 H 1.08998 * 109.35259 * 102.56378 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1560 -2.6097 0.0023 7 7 5.6249 -2.6097 0.0022 8 6 6.1555 -3.9707 0.2433 9 6 7.1661 -3.2952 1.1790 10 6 6.1555 -2.1482 1.3052 11 6 8.4691 -2.8961 0.4932 12 7 9.3920 -4.0310 0.4965 13 6 10.5468 -4.0018 -0.4045 14 6 11.7335 -3.3505 0.3085 15 6 12.9213 -3.3198 -0.6185 16 1 12.8381 -3.7248 -1.6163 17 6 14.1144 -2.7758 -0.1926 18 7 15.1511 -2.7495 -1.0014 19 14 14.2584 -2.0761 1.5334 20 1 14.6989 -3.1448 2.4657 21 1 15.2530 -0.9734 1.5391 22 1 12.9379 -1.5538 1.9676 23 6 9.2227 -5.0940 1.2897 24 8 10.0664 -5.9652 1.2740 25 6 8.0398 -5.2623 2.1993 26 8 7.3860 -4.0054 2.3969 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6959 -2.0073 0.0013 31 1 4.0089 -0.6531 0.8910 32 1 4.0095 -0.6536 -0.8889 33 1 3.7929 -3.1241 -0.8876 34 1 3.7923 -3.1229 0.8924 35 1 6.6084 -4.4282 -0.6362 36 1 5.4556 -4.6311 0.7553 37 1 5.4556 -2.2680 2.1322 38 1 6.6084 -1.1574 1.2695 39 1 8.2622 -2.5994 -0.5350 40 1 8.9197 -2.0602 1.0283 41 1 10.8095 -5.0199 -0.6915 42 1 10.2977 -3.4258 -1.2958 43 1 11.4707 -2.3323 0.5955 44 1 11.9825 -3.9264 1.1997 45 1 15.9903 -2.3664 -0.7019 46 1 8.3759 -5.6496 3.1611 47 1 7.3387 -5.9678 1.7534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273998318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = -68.500363 kcal Electronic energy + Delta-G solvation = -27900.869231 eV Core-core repulsion = 23892.359760 eV Total energy + Delta-G solvation = -4008.509471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.57533 -40.00943 -39.40056 -37.10997 -35.65941 -35.29968 -33.02300 -32.00483 -30.62781 -30.06222 -28.41078 -27.23005 -26.63481 -25.00782 -24.63523 -22.41186 -21.31944 -20.99709 -20.12582 -18.31503 -17.96993 -17.24082 -17.18515 -16.81346 -16.38747 -16.21358 -15.93861 -15.72819 -15.50419 -14.83110 -14.55826 -14.23449 -14.12173 -13.94135 -13.71069 -13.61229 -13.21680 -13.10090 -12.96973 -12.83105 -12.63850 -12.58340 -12.38627 -12.07662 -11.72305 -11.56165 -11.49546 -11.13561 -10.92302 -10.53582 -10.36808 -10.24262 -10.02881 -9.83061 -9.57032 -9.42675 -9.36278 -9.12374 -8.52886 -8.29963 -6.04091 -4.02677 2.21023 2.59228 2.74457 2.98921 3.29913 3.33816 3.40205 3.44131 3.51464 3.97771 4.15145 4.22013 4.38000 4.46747 4.51117 4.53923 4.69407 4.76057 4.85778 4.86133 4.92359 5.02185 5.09080 5.22424 5.29752 5.30575 5.33592 5.38459 5.43332 5.49434 5.50653 5.69069 5.73339 5.90135 5.96409 6.32055 6.39779 6.50026 6.63080 6.70795 6.99518 7.23879 7.34222 7.70138 7.76772 7.78581 8.34429 8.50778 8.98857 9.58045 11.08992 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.002448 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.023281 B =11434.638350 C =12319.604381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.509 3.491 3 O -0.543 6.543 4 N -0.733 5.733 5 C 0.120 3.880 6 C 0.013 3.987 7 N -0.466 5.466 8 C -0.016 4.016 9 C 0.068 3.932 10 C 0.024 3.976 11 C 0.115 3.885 12 N -0.599 5.599 13 C 0.123 3.877 14 C -0.022 4.022 15 C -0.519 4.519 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.901 5.901 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.478 3.522 24 O -0.537 6.537 25 C 0.052 3.948 26 O -0.358 6.358 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.401 0.599 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.015 0.985 44 H 0.017 0.983 45 H 0.263 0.737 46 H 0.128 0.872 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.431 -0.359 4.294 32.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.296 3.704 3 O -0.419 6.419 4 N -0.386 5.386 5 C -0.004 4.004 6 C -0.116 4.116 7 N -0.189 5.189 8 C -0.145 4.145 9 C 0.028 3.972 10 C -0.105 4.105 11 C -0.009 4.009 12 N -0.332 5.332 13 C 0.002 3.998 14 C -0.060 4.060 15 C -0.557 4.557 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.540 5.540 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.192 1.192 23 C 0.264 3.736 24 O -0.414 6.414 25 C -0.027 4.027 26 O -0.276 6.276 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.234 0.766 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.033 0.967 44 H 0.036 0.964 45 H 0.073 0.927 46 H 0.146 0.854 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -31.259 0.434 3.844 31.498 hybrid contribution -0.276 -0.571 1.396 1.534 sum -31.535 -0.137 5.240 31.968 Atomic orbital electron populations 1.21921 0.91469 1.05718 1.04261 1.20836 0.90677 0.83345 0.75557 1.90763 1.70882 1.31368 1.48929 1.45976 1.07404 1.08929 1.76335 1.21240 0.79261 0.96362 1.03526 1.22793 0.89991 0.96584 1.02240 1.68523 1.07842 1.12715 1.29864 1.24596 0.97240 0.92293 1.00343 1.23351 0.94289 0.94030 0.85575 1.24094 0.95491 0.98971 0.91915 1.21695 0.87029 0.89793 1.02378 1.47747 1.27080 1.17968 1.40428 1.21753 0.84207 1.02665 0.91143 1.19836 0.93693 0.95422 0.97053 1.20950 0.94070 1.39897 1.00818 0.90831 1.24971 0.95619 0.95386 0.97248 1.69902 1.02149 1.45903 1.36048 0.86764 0.78049 0.79032 0.85337 1.20257 1.21343 1.19180 1.20664 0.88469 0.82613 0.81818 1.90778 1.42822 1.40960 1.66890 1.22766 0.91899 0.86597 1.01430 1.88103 1.78664 1.31987 1.28814 0.89377 0.88861 0.89334 0.76557 0.91228 0.90229 0.89549 0.93174 0.88102 0.89891 0.89428 0.87379 0.88331 0.90176 0.90065 0.90932 0.96666 0.96443 0.92679 0.85432 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.32 36.01 0.37 -0.23 16 2 C 0.51 3.91 7.94 -10.98 -0.09 3.82 16 3 O -0.54 -7.02 17.09 5.55 0.09 -6.93 16 4 N -0.73 -3.97 5.56 -60.29 -0.33 -4.31 16 5 C 0.12 0.83 5.74 -4.04 -0.02 0.81 16 6 C 0.01 0.07 4.93 -3.82 -0.02 0.05 16 7 N -0.47 -3.65 6.15 -240.94 -1.48 -5.13 16 8 C -0.02 -0.13 6.67 -2.99 -0.02 -0.15 16 9 C 0.07 0.71 1.21 -90.51 -0.11 0.60 16 10 C 0.02 0.20 6.51 -2.99 -0.02 0.18 16 11 C 0.11 1.49 5.79 -4.39 -0.03 1.46 16 12 N -0.60 -10.09 2.83 -174.67 -0.50 -10.59 16 13 C 0.12 2.50 5.20 -4.04 -0.02 2.48 16 14 C -0.02 -0.54 4.36 -27.88 -0.12 -0.66 16 15 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 19 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 23 C 0.48 8.14 7.57 -11.72 -0.09 8.05 16 24 O -0.54 -11.50 16.33 5.56 0.09 -11.41 16 25 C 0.05 0.63 6.67 35.75 0.24 0.87 16 26 O -0.36 -4.19 10.66 -35.23 -0.38 -4.57 16 27 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.40 0.88 8.47 -40.82 -0.35 0.54 16 31 H 0.07 0.57 7.54 -51.93 -0.39 0.17 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.05 0.23 7.70 -51.93 -0.40 -0.17 16 35 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 37 H 0.09 0.63 7.79 -51.93 -0.40 0.23 16 38 H 0.11 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.10 1.18 7.88 -51.93 -0.41 0.77 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.79 7.29 -51.93 -0.38 1.41 16 42 H 0.07 1.35 7.96 -51.93 -0.41 0.94 16 43 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 44 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.13 1.41 8.14 -51.93 -0.42 0.98 16 47 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -37.88 383.42 -8.69 -46.56 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -7.71 Total: -3.73 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.36 Total: 3.86 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -1.54 Total: -47.44 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.19 Total: -22.90 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.88 -8.69 -46.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273998318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.937 kcal (2) G-P(sol) polarization free energy of solvation -37.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds