Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21286 * 119.99905 * 2 1 4 4 N 1.34776 * 119.99786 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99436 * 180.02562 * 4 2 1 6 6 C 1.53009 * 109.46881 * 179.97438 * 5 4 2 7 7 N 1.46893 * 109.47135 * 179.97438 * 6 5 4 8 8 C 1.48054 * 111.00150 * 170.00056 * 7 6 5 9 9 C 1.53398 * 86.02491 * 222.77488 * 8 7 6 10 10 C 1.48062 * 110.99861 * 70.54686 * 7 6 5 11 11 C 1.52563 * 113.80509 * 268.71612 * 9 8 7 12 12 N 1.46271 * 109.56650 * 273.97854 * 11 9 8 13 13 C 1.46503 * 118.71402 * 163.92105 * 12 11 9 14 14 C 1.52998 * 109.47013 * 90.00177 * 13 12 11 15 15 C 1.50699 * 109.47172 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99774 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00172 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00412 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00098 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47078 * 89.99824 * 19 17 15 21 21 H 1.48499 * 109.47086 * 210.00036 * 19 17 15 22 22 H 1.48497 * 109.46735 * 330.00014 * 19 17 15 23 23 C 1.33712 * 122.56694 * 343.92231 * 12 11 9 24 24 O 1.21282 * 118.37931 * 183.25932 * 23 12 11 25 25 C 1.50163 * 123.24130 * 3.23823 * 23 12 11 26 26 O 1.42681 * 113.76711 * 138.11412 * 9 8 7 27 27 H 1.08998 * 109.47217 * 239.99742 * 1 2 3 28 28 H 1.09003 * 109.47166 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47112 * 120.00061 * 1 2 3 30 30 H 0.96997 * 120.00501 * 359.97438 * 4 2 1 31 31 H 1.08998 * 109.47530 * 59.99910 * 5 4 2 32 32 H 1.09000 * 109.47042 * 299.99244 * 5 4 2 33 33 H 1.09007 * 109.46813 * 59.99648 * 6 5 4 34 34 H 1.08997 * 109.46838 * 300.00064 * 6 5 4 35 35 H 1.08993 * 113.78984 * 108.49572 * 8 7 6 36 36 H 1.09002 * 113.78491 * 337.05011 * 8 7 6 37 37 H 1.09001 * 113.78482 * 22.95195 * 10 7 6 38 38 H 1.09007 * 113.78819 * 251.50526 * 10 7 6 39 39 H 1.08997 * 109.45597 * 34.01159 * 11 9 8 40 40 H 1.09004 * 109.44959 * 153.94964 * 11 9 8 41 41 H 1.08996 * 109.46694 * 210.00179 * 13 12 11 42 42 H 1.09000 * 109.47017 * 330.00267 * 13 12 11 43 43 H 1.09004 * 109.47037 * 300.00074 * 14 13 12 44 44 H 1.08996 * 109.47281 * 59.99695 * 14 13 12 45 45 H 0.96995 * 120.00465 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.35284 * 222.12682 * 25 23 12 47 47 H 1.08998 * 109.35259 * 102.56378 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1560 -2.6097 0.0023 7 7 5.6249 -2.6097 0.0022 8 6 6.1555 -3.9707 0.2433 9 6 7.1661 -3.2952 1.1790 10 6 6.1555 -2.1482 1.3052 11 6 8.4691 -2.8961 0.4932 12 7 9.3920 -4.0310 0.4965 13 6 10.5468 -4.0018 -0.4045 14 6 11.7335 -3.3505 0.3085 15 6 12.9213 -3.3198 -0.6185 16 1 12.8381 -3.7248 -1.6163 17 6 14.1144 -2.7758 -0.1926 18 7 15.1511 -2.7495 -1.0014 19 14 14.2584 -2.0761 1.5334 20 1 14.6989 -3.1448 2.4657 21 1 15.2530 -0.9734 1.5391 22 1 12.9379 -1.5538 1.9676 23 6 9.2227 -5.0940 1.2897 24 8 10.0664 -5.9652 1.2740 25 6 8.0398 -5.2623 2.1993 26 8 7.3860 -4.0054 2.3969 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6959 -2.0073 0.0013 31 1 4.0089 -0.6531 0.8910 32 1 4.0095 -0.6536 -0.8889 33 1 3.7929 -3.1241 -0.8876 34 1 3.7923 -3.1229 0.8924 35 1 6.6084 -4.4282 -0.6362 36 1 5.4556 -4.6311 0.7553 37 1 5.4556 -2.2680 2.1322 38 1 6.6084 -1.1574 1.2695 39 1 8.2622 -2.5994 -0.5350 40 1 8.9197 -2.0602 1.0283 41 1 10.8095 -5.0199 -0.6915 42 1 10.2977 -3.4258 -1.2958 43 1 11.4707 -2.3323 0.5955 44 1 11.9825 -3.9264 1.1997 45 1 15.9903 -2.3664 -0.7019 46 1 8.3759 -5.6496 3.1611 47 1 7.3387 -5.9678 1.7534 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273998318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = -101.163206 kcal Electronic energy + Delta-G solvation = -27902.285598 eV Core-core repulsion = 23892.359760 eV Total energy + Delta-G solvation = -4009.925838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.45297 -40.78454 -40.37464 -38.03622 -37.06032 -36.02751 -35.09050 -32.83835 -32.26840 -30.70025 -29.27152 -28.45477 -27.29766 -26.31231 -25.75804 -23.38905 -22.65621 -21.67322 -21.24236 -19.38263 -19.11168 -18.92914 -17.88705 -17.69129 -17.30183 -17.05684 -16.89042 -16.74948 -16.33205 -16.17877 -15.80188 -15.37520 -15.09533 -14.87755 -14.81920 -14.71361 -14.53531 -14.24913 -14.22701 -13.60092 -13.51151 -13.31489 -13.26071 -13.06240 -12.96859 -12.83193 -12.50465 -12.34370 -12.10540 -12.02862 -11.88903 -11.69870 -11.56333 -11.27581 -10.99644 -10.83090 -10.45878 -10.14211 -9.97051 -9.76195 -8.35366 -6.39718 1.29484 1.30729 1.42040 1.44586 1.65447 1.77080 2.15269 2.29825 2.43469 2.87992 2.99411 3.19352 3.26656 3.60113 3.71397 3.88673 3.98118 4.06000 4.13403 4.23458 4.30961 4.34919 4.44836 4.46747 4.49537 4.51491 4.55047 4.63036 4.68734 4.71417 4.75672 4.80736 4.86632 4.90576 5.01851 5.13195 5.20476 5.28793 5.39443 5.41430 5.59215 5.76081 5.86475 6.18559 6.39056 6.57606 6.66113 7.01912 7.24837 7.28350 8.80865 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.002448 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.023281 B =11434.638350 C =12319.604381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.501 3.499 3 O -0.606 6.606 4 N -0.717 5.717 5 C 0.123 3.877 6 C 0.022 3.978 7 N -0.479 5.479 8 C -0.005 4.005 9 C 0.061 3.939 10 C 0.032 3.968 11 C 0.110 3.890 12 N -0.600 5.600 13 C 0.134 3.866 14 C -0.012 4.012 15 C -0.530 4.530 16 H 0.041 0.959 17 C 0.010 3.990 18 N -0.944 5.944 19 Si 0.947 3.053 20 H -0.275 1.275 21 H -0.275 1.275 22 H -0.251 1.251 23 C 0.470 3.530 24 O -0.590 6.590 25 C 0.064 3.936 26 O -0.359 6.359 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.420 0.580 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.023 0.977 44 H -0.001 1.001 45 H 0.268 0.732 46 H 0.140 0.860 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.927 -0.630 5.984 36.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.290 3.710 3 O -0.487 6.487 4 N -0.371 5.371 5 C -0.001 4.001 6 C -0.107 4.107 7 N -0.203 5.203 8 C -0.133 4.133 9 C 0.021 3.979 10 C -0.097 4.097 11 C -0.013 4.013 12 N -0.331 5.331 13 C 0.012 3.988 14 C -0.050 4.050 15 C -0.569 4.569 16 H 0.059 0.941 17 C -0.188 4.188 18 N -0.584 5.584 19 Si 0.771 3.229 20 H -0.201 1.201 21 H -0.200 1.200 22 H -0.175 1.175 23 C 0.259 3.741 24 O -0.471 6.471 25 C -0.015 4.015 26 O -0.277 6.277 27 H 0.132 0.868 28 H 0.102 0.898 29 H 0.131 0.869 30 H 0.257 0.743 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.042 0.958 44 H 0.017 0.983 45 H 0.077 0.923 46 H 0.158 0.842 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -34.825 0.140 5.533 35.262 hybrid contribution 0.806 -0.513 0.767 1.225 sum -34.020 -0.374 6.300 34.600 Atomic orbital electron populations 1.21926 0.87991 1.05934 1.06599 1.21659 0.92411 0.82790 0.74170 1.90736 1.72366 1.33604 1.52020 1.45861 1.06898 1.09421 1.74922 1.21088 0.80162 0.97127 1.01750 1.22762 0.88552 0.95557 1.03830 1.68518 1.09446 1.12579 1.29760 1.24561 0.96666 0.92615 0.99480 1.23451 0.93360 0.95592 0.85545 1.24110 0.94902 0.98009 0.92638 1.21923 0.87688 0.88221 1.03421 1.47758 1.26403 1.19273 1.39671 1.21317 0.84542 1.00998 0.91974 1.19679 0.93859 0.95832 0.95630 1.21267 0.95983 1.39317 1.00320 0.94114 1.25907 0.95235 0.95881 1.01750 1.70034 1.02915 1.47140 1.38313 0.85707 0.78980 0.78515 0.79697 1.20109 1.20034 1.17477 1.21723 0.89320 0.81504 0.81597 1.90752 1.45090 1.42758 1.68542 1.22774 0.90261 0.87589 1.00834 1.88119 1.78163 1.31885 1.29500 0.86818 0.89804 0.86920 0.74290 0.92553 0.92671 0.88295 0.91064 0.88859 0.87508 0.87849 0.87642 0.87431 0.90878 0.92389 0.89416 0.95831 0.98302 0.92292 0.84216 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.32 71.24 0.74 0.00 16 2 C 0.50 7.07 7.94 87.66 0.70 7.76 16 3 O -0.61 -15.94 17.09 -3.05 -0.05 -16.00 16 4 N -0.72 -6.15 5.56 -463.03 -2.57 -8.73 16 5 C 0.12 1.51 5.74 86.38 0.50 2.01 16 6 C 0.02 0.17 4.93 86.31 0.43 0.59 16 7 N -0.48 -6.14 6.15 -920.47 -5.66 -11.81 16 8 C 0.00 -0.06 6.67 86.21 0.58 0.52 16 9 C 0.06 1.10 1.21 -10.65 -0.01 1.09 16 10 C 0.03 0.43 6.51 86.20 0.56 0.99 16 11 C 0.11 2.70 5.79 86.28 0.50 3.20 16 12 N -0.60 -19.85 2.83 -825.53 -2.34 -22.19 16 13 C 0.13 5.56 5.20 86.38 0.45 6.01 16 14 C -0.01 -0.58 4.36 29.85 0.13 -0.45 16 15 C -0.53 -31.76 9.66 25.60 0.25 -31.51 16 16 H 0.04 2.63 7.99 -2.91 -0.02 2.60 16 17 C 0.01 0.60 5.47 84.65 0.46 1.06 16 18 N -0.94 -60.46 13.96 21.45 0.30 -60.16 16 19 Si 0.95 46.72 27.47 68.60 1.88 48.60 16 20 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 23 C 0.47 15.62 7.57 87.65 0.66 16.28 16 24 O -0.59 -25.60 16.33 -3.04 -0.05 -25.65 16 25 C 0.06 1.36 6.67 71.07 0.47 1.84 16 26 O -0.36 -7.23 10.66 -148.98 -1.59 -8.82 16 27 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 29 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.42 0.35 8.47 -92.71 -0.79 -0.44 16 31 H 0.06 0.85 7.54 -2.39 -0.02 0.84 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.07 0.31 7.70 -2.39 -0.02 0.30 16 35 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 36 H 0.11 0.91 7.79 -2.39 -0.02 0.89 16 37 H 0.10 1.10 7.79 -2.39 -0.02 1.09 16 38 H 0.11 1.49 8.09 -2.38 -0.02 1.47 16 39 H 0.11 2.43 7.88 -2.39 -0.02 2.41 16 40 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.06 2.66 7.29 -2.39 -0.02 2.65 16 42 H 0.09 3.32 7.96 -2.39 -0.02 3.30 16 43 H 0.02 1.13 7.20 -2.38 -0.02 1.12 16 44 H 0.00 -0.08 7.57 -2.39 -0.02 -0.09 16 45 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 46 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.12 1.77 7.92 -2.39 -0.02 1.75 16 Total: -1.00 -86.82 383.42 -3.55 -90.37 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 0.13 Total: 4.99 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.40 Total: 9.38 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -10.28 Total: -102.89 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -1.69 Total: -50.46 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.88 Total: 48.60 kcal Total: -86.82 -3.55 -90.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273998318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.790 kcal (2) G-P(sol) polarization free energy of solvation -86.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds