Wall clock time and date at job start Tue Mar 31 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99557 * 2 1 4 4 C 1.53003 * 109.47182 * 90.00124 * 3 2 1 5 5 H 1.09003 * 109.46649 * 304.99946 * 4 3 2 6 6 O 1.42897 * 109.47402 * 64.99463 * 4 3 2 7 7 C 1.53000 * 109.46961 * 185.00177 * 4 3 2 8 8 N 1.46907 * 109.46907 * 179.97438 * 7 4 3 9 9 C 1.46899 * 111.00147 * 179.97438 * 8 7 4 10 10 C 1.50694 * 109.47315 * 179.97438 * 9 8 7 11 11 O 1.21295 * 119.99913 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99896 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99676 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00356 * 0.02562 * 13 12 10 15 15 C 1.38951 * 119.99961 * 179.97438 * 13 12 10 16 16 N 1.31414 * 119.99943 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00348 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47225 * 89.99920 * 17 15 13 19 19 H 1.48492 * 109.47606 * 210.00280 * 17 15 13 20 20 H 1.48504 * 109.47166 * 330.00620 * 17 15 13 21 21 C 1.34767 * 120.00364 * 179.97438 * 2 1 3 22 22 O 1.21281 * 120.00287 * 184.91169 * 21 2 1 23 23 C 1.50697 * 120.00239 * 4.90816 * 21 2 1 24 24 C 1.54640 * 111.04035 * 263.66497 * 23 21 2 25 25 C 1.51100 * 104.72783 * 217.33252 * 24 23 21 26 26 C 1.30526 * 111.10162 * 16.43286 * 25 24 23 27 27 C 1.51105 * 111.10754 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46551 * 119.65122 * 1 2 3 29 29 H 1.09002 * 109.46777 * 239.64588 * 1 2 3 30 30 H 1.08992 * 109.47458 * 359.64805 * 1 2 3 31 31 H 1.08998 * 109.47198 * 329.99754 * 3 2 1 32 32 H 1.08999 * 109.46945 * 209.99698 * 3 2 1 33 33 H 0.96704 * 113.99374 * 59.99953 * 6 4 3 34 34 H 1.08995 * 109.47000 * 299.99143 * 7 4 3 35 35 H 1.08994 * 109.47554 * 60.00017 * 7 4 3 36 36 H 1.00895 * 110.99580 * 303.95097 * 8 7 4 37 37 H 1.08999 * 109.47045 * 300.00080 * 9 8 7 38 38 H 1.09000 * 109.46970 * 59.99690 * 9 8 7 39 39 H 0.97000 * 120.00506 * 359.97438 * 12 10 9 40 40 H 0.96999 * 120.00212 * 180.02562 * 16 15 13 41 41 H 1.09005 * 110.91653 * 27.67365 * 23 21 2 42 42 H 1.08998 * 110.38456 * 336.14528 * 24 23 21 43 43 H 1.08995 * 110.38618 * 98.51980 * 24 23 21 44 44 H 1.07990 * 124.44636 * 196.46041 * 25 24 23 45 45 H 1.08002 * 124.44545 * 180.02562 * 26 25 24 46 46 H 1.08998 * 110.38425 * 224.74756 * 27 26 25 47 47 H 1.09001 * 110.48052 * 102.42245 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 1 1.5060 1.7549 1.9815 6 8 3.3208 0.7726 2.0815 7 6 3.1058 3.0940 1.4443 8 7 3.3501 3.5183 2.8294 9 6 3.9788 4.8454 2.8703 10 6 4.2128 5.2463 4.3040 11 8 3.8875 4.5002 5.2032 12 7 4.7827 6.4344 4.5869 13 6 4.9952 6.7994 5.8913 14 1 4.7062 6.1348 6.6919 15 6 5.5832 8.0241 6.1830 16 7 5.9353 8.8327 5.2088 17 14 5.8720 8.5218 7.9601 18 1 7.2138 8.0552 8.3931 19 1 5.8002 10.0002 8.0781 20 1 4.8318 7.9053 8.8222 21 6 2.1389 -1.1671 0.0005 22 8 3.3484 -1.1689 0.0904 23 6 1.3897 -2.4699 -0.1106 24 6 1.1451 -3.0904 1.2846 25 6 1.3048 -4.5784 1.0766 26 6 1.9141 -4.8328 -0.0493 27 6 2.2629 -3.5568 -0.7797 28 1 -0.3632 -0.5084 -0.8931 29 1 -0.3633 -0.5193 0.8868 30 1 -0.3634 1.0275 0.0063 31 1 1.6083 2.0284 -0.5139 32 1 3.1499 1.1385 -0.5138 33 1 4.1836 0.6813 1.6542 34 1 4.0522 3.0495 0.9054 35 1 2.4434 3.8093 0.9570 36 1 2.4966 3.5054 3.3673 37 1 4.9314 4.8126 2.3417 38 1 3.3229 5.5730 2.3923 39 1 5.0426 7.0313 3.8678 40 1 6.3461 9.6874 5.4124 41 1 0.4518 -2.3347 -0.6492 42 1 1.8843 -2.7251 1.9975 43 1 0.1372 -2.8613 1.6306 44 1 0.9597 -5.3324 1.7684 45 1 2.1394 -5.8251 -0.4114 46 1 2.0148 -3.6448 -1.8374 47 1 3.3207 -3.3239 -0.6567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677064708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:19 Heat of formation + Delta-G solvation = -97.701308 kcal Electronic energy + Delta-G solvation = -27216.544217 eV Core-core repulsion = 23206.768498 eV Total energy + Delta-G solvation = -4009.775719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.68549 -38.60780 -38.13055 -37.20291 -35.57933 -34.64563 -33.73701 -31.23645 -30.97641 -29.59334 -28.52806 -27.73758 -26.62223 -24.99024 -23.49273 -22.08746 -21.51159 -19.28245 -19.19046 -19.10062 -17.86976 -17.74318 -17.03556 -16.53649 -16.08860 -15.94436 -15.65250 -15.12676 -14.86214 -14.47667 -14.42812 -14.27104 -13.72417 -13.42105 -13.36838 -13.16050 -13.04886 -12.85967 -12.67569 -12.48794 -12.40208 -12.13152 -11.84802 -11.75512 -11.54766 -11.50807 -11.46416 -11.45043 -11.06968 -11.01306 -10.37437 -10.21771 -10.18059 -9.91288 -9.48364 -9.21805 -8.81916 -8.40447 -8.00500 -7.92685 -6.39387 -3.80006 1.92325 2.39211 2.65810 3.19990 3.28231 3.34360 3.93678 4.03167 4.09821 4.26341 4.27283 4.36850 4.55390 4.68655 4.73480 4.81729 4.90190 4.95111 5.02867 5.07977 5.15189 5.19614 5.25102 5.27695 5.31325 5.32322 5.42033 5.44148 5.55075 5.57424 5.62554 5.79795 5.81148 5.98700 6.00092 6.16474 6.18945 6.29075 6.53498 7.07017 7.22301 7.57683 7.66610 7.89836 7.98552 8.09138 8.64233 9.20613 9.57033 10.08969 10.78456 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.001852 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.844625 B =15111.344041 C =15518.517560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.083 3.917 4 C 0.098 3.902 5 H 0.093 0.907 6 O -0.535 6.535 7 C 0.029 3.971 8 N -0.657 5.657 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.530 3.470 22 O -0.526 6.526 23 C -0.116 4.116 24 C -0.085 4.085 25 C -0.166 4.166 26 C -0.164 4.164 27 C -0.089 4.089 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.376 0.624 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.349 0.651 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.071 0.929 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 -20.038 -17.897 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C -0.040 4.040 4 C 0.036 3.964 5 H 0.111 0.889 6 O -0.340 6.340 7 C -0.102 4.102 8 N -0.290 5.290 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.464 6.464 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.318 3.682 22 O -0.402 6.402 23 C -0.137 4.137 24 C -0.122 4.122 25 C -0.184 4.184 26 C -0.182 4.182 27 C -0.126 4.126 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.223 0.777 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.169 0.831 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.090 0.910 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.514 -20.728 -16.777 29.456 hybrid contribution -0.108 1.519 -0.275 1.548 sum -12.622 -19.208 -17.052 28.619 Atomic orbital electron populations 1.21821 0.79454 1.03444 1.01759 1.47687 1.06825 1.05812 1.74252 1.22276 0.98534 0.85108 0.98113 1.22230 0.94364 0.87803 0.92002 0.88896 1.86595 1.29150 1.61767 1.56502 1.22632 1.00322 0.95857 0.91412 1.59917 1.32585 1.26689 1.09792 1.21687 0.99943 0.89603 0.96951 1.19810 0.84419 0.83389 0.89739 1.90537 1.55732 1.52537 1.47630 1.41862 1.53662 1.15866 1.08796 1.19712 1.37155 1.01883 0.84049 0.87927 1.25262 0.97103 0.95886 0.99769 1.69614 1.42120 1.10748 1.31956 0.85848 0.78924 0.77416 0.82038 1.20390 1.20967 1.19439 1.20263 0.87776 0.84766 0.75422 1.90661 1.14209 1.86846 1.48468 1.22188 0.99766 0.92732 0.99028 1.21256 1.02579 0.92953 0.95403 1.23229 1.00636 0.96571 0.97952 1.23254 0.99426 0.98439 0.97060 1.21344 1.01315 0.91053 0.98931 0.92039 0.91877 0.90317 0.89760 0.89455 0.77656 0.90712 0.94923 0.83134 0.89675 0.94073 0.77493 0.91919 0.88489 0.89606 0.90615 0.85517 0.85590 0.91021 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 9.58 59.85 0.57 0.98 16 2 N -0.61 -5.22 2.86 -181.57 -0.52 -5.74 16 3 C 0.08 0.72 5.07 -4.04 -0.02 0.70 16 4 C 0.10 1.09 3.42 -26.73 -0.09 1.00 16 5 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 6 O -0.54 -7.81 11.93 -48.13 -0.57 -8.38 16 7 C 0.03 0.34 5.35 -3.82 -0.02 0.32 16 8 N -0.66 -11.03 5.99 -115.06 -0.69 -11.72 16 9 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.74 7.82 -10.99 -0.09 10.65 16 11 O -0.58 -16.37 15.78 5.54 0.09 -16.28 16 12 N -0.56 -14.64 5.29 -10.96 -0.06 -14.70 16 13 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 14 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 17 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.53 5.55 6.42 -10.99 -0.07 5.48 16 22 O -0.53 -7.31 14.05 -7.35 -0.10 -7.41 16 23 C -0.12 -0.92 2.92 -90.04 -0.26 -1.19 16 24 C -0.08 -0.69 6.37 -26.82 -0.17 -0.86 16 25 C -0.17 -1.24 10.78 -35.70 -0.38 -1.63 16 26 C -0.16 -1.21 10.77 -35.70 -0.38 -1.60 16 27 C -0.09 -0.73 6.33 -26.82 -0.17 -0.90 16 28 H 0.06 0.22 7.28 -51.93 -0.38 -0.16 16 29 H 0.06 0.32 8.13 -51.93 -0.42 -0.11 16 30 H 0.08 0.31 7.80 -51.93 -0.40 -0.09 16 31 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 32 H 0.09 0.84 7.50 -51.93 -0.39 0.45 16 33 H 0.38 5.12 8.63 45.56 0.39 5.51 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.35 6.12 8.43 -39.29 -0.33 5.79 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.10 0.57 6.59 -51.93 -0.34 0.22 16 42 H 0.09 0.90 7.88 -51.93 -0.41 0.49 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.98 6.94 -51.93 -0.36 0.62 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -35.21 389.56 -8.34 -43.55 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -6.69 Total: 16.90 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.36 Total: 5.69 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.54 Total: -56.30 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.59 Total: -32.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.21 -8.34 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677064708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.149 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds