Wall clock time and date at job start Tue Mar 31 2020 06:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99557 * 2 1 4 4 C 1.53003 * 109.47182 * 90.00124 * 3 2 1 5 5 H 1.09003 * 109.46649 * 304.99946 * 4 3 2 6 6 O 1.42897 * 109.47402 * 64.99463 * 4 3 2 7 7 C 1.53000 * 109.46961 * 185.00177 * 4 3 2 8 8 N 1.46907 * 109.46907 * 179.97438 * 7 4 3 9 9 C 1.46899 * 111.00147 * 179.97438 * 8 7 4 10 10 C 1.50694 * 109.47315 * 179.97438 * 9 8 7 11 11 O 1.21295 * 119.99913 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99896 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99676 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00356 * 0.02562 * 13 12 10 15 15 C 1.38951 * 119.99961 * 179.97438 * 13 12 10 16 16 N 1.31414 * 119.99943 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00348 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47225 * 89.99920 * 17 15 13 19 19 H 1.48492 * 109.47606 * 210.00280 * 17 15 13 20 20 H 1.48504 * 109.47166 * 330.00620 * 17 15 13 21 21 C 1.34767 * 120.00364 * 179.97438 * 2 1 3 22 22 O 1.21281 * 120.00287 * 184.91169 * 21 2 1 23 23 C 1.50697 * 120.00239 * 4.90816 * 21 2 1 24 24 C 1.54640 * 111.04035 * 263.66497 * 23 21 2 25 25 C 1.51100 * 104.72783 * 217.33252 * 24 23 21 26 26 C 1.30526 * 111.10162 * 16.43286 * 25 24 23 27 27 C 1.51105 * 111.10754 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46551 * 119.65122 * 1 2 3 29 29 H 1.09002 * 109.46777 * 239.64588 * 1 2 3 30 30 H 1.08992 * 109.47458 * 359.64805 * 1 2 3 31 31 H 1.08998 * 109.47198 * 329.99754 * 3 2 1 32 32 H 1.08999 * 109.46945 * 209.99698 * 3 2 1 33 33 H 0.96704 * 113.99374 * 59.99953 * 6 4 3 34 34 H 1.08995 * 109.47000 * 299.99143 * 7 4 3 35 35 H 1.08994 * 109.47554 * 60.00017 * 7 4 3 36 36 H 1.00895 * 110.99580 * 303.95097 * 8 7 4 37 37 H 1.08999 * 109.47045 * 300.00080 * 9 8 7 38 38 H 1.09000 * 109.46970 * 59.99690 * 9 8 7 39 39 H 0.97000 * 120.00506 * 359.97438 * 12 10 9 40 40 H 0.96999 * 120.00212 * 180.02562 * 16 15 13 41 41 H 1.09005 * 110.91653 * 27.67365 * 23 21 2 42 42 H 1.08998 * 110.38456 * 336.14528 * 24 23 21 43 43 H 1.08995 * 110.38618 * 98.51980 * 24 23 21 44 44 H 1.07990 * 124.44636 * 196.46041 * 25 24 23 45 45 H 1.08002 * 124.44545 * 180.02562 * 26 25 24 46 46 H 1.08998 * 110.38425 * 224.74756 * 27 26 25 47 47 H 1.09001 * 110.48052 * 102.42245 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 1 1.5060 1.7549 1.9815 6 8 3.3208 0.7726 2.0815 7 6 3.1058 3.0940 1.4443 8 7 3.3501 3.5183 2.8294 9 6 3.9788 4.8454 2.8703 10 6 4.2128 5.2463 4.3040 11 8 3.8875 4.5002 5.2032 12 7 4.7827 6.4344 4.5869 13 6 4.9952 6.7994 5.8913 14 1 4.7062 6.1348 6.6919 15 6 5.5832 8.0241 6.1830 16 7 5.9353 8.8327 5.2088 17 14 5.8720 8.5218 7.9601 18 1 7.2138 8.0552 8.3931 19 1 5.8002 10.0002 8.0781 20 1 4.8318 7.9053 8.8222 21 6 2.1389 -1.1671 0.0005 22 8 3.3484 -1.1689 0.0904 23 6 1.3897 -2.4699 -0.1106 24 6 1.1451 -3.0904 1.2846 25 6 1.3048 -4.5784 1.0766 26 6 1.9141 -4.8328 -0.0493 27 6 2.2629 -3.5568 -0.7797 28 1 -0.3632 -0.5084 -0.8931 29 1 -0.3633 -0.5193 0.8868 30 1 -0.3634 1.0275 0.0063 31 1 1.6083 2.0284 -0.5139 32 1 3.1499 1.1385 -0.5138 33 1 4.1836 0.6813 1.6542 34 1 4.0522 3.0495 0.9054 35 1 2.4434 3.8093 0.9570 36 1 2.4966 3.5054 3.3673 37 1 4.9314 4.8126 2.3417 38 1 3.3229 5.5730 2.3923 39 1 5.0426 7.0313 3.8678 40 1 6.3461 9.6874 5.4124 41 1 0.4518 -2.3347 -0.6492 42 1 1.8843 -2.7251 1.9975 43 1 0.1372 -2.8613 1.6306 44 1 0.9597 -5.3324 1.7684 45 1 2.1394 -5.8251 -0.4114 46 1 2.0148 -3.6448 -1.8374 47 1 3.3207 -3.3239 -0.6567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677064708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:18 Heat of formation + Delta-G solvation = -125.447422 kcal Electronic energy + Delta-G solvation = -27217.747379 eV Core-core repulsion = 23206.768498 eV Total energy + Delta-G solvation = -4010.978881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.40545 -40.20007 -39.20064 -38.12494 -36.47081 -36.09763 -35.54790 -33.28526 -31.87471 -30.41218 -29.15640 -28.76579 -27.53998 -26.49220 -24.84204 -22.97503 -22.31505 -21.09178 -19.94593 -19.89172 -19.70622 -18.45516 -18.17493 -17.44968 -17.23074 -17.06210 -16.66704 -16.39804 -16.15837 -16.00352 -15.76079 -15.23585 -15.02671 -14.93848 -14.36706 -14.08203 -13.89713 -13.74853 -13.49135 -13.46623 -13.24277 -13.21199 -13.04014 -13.02418 -12.83703 -12.65408 -12.43637 -12.39478 -12.14618 -12.12775 -12.06853 -11.97406 -11.52674 -11.17087 -10.73029 -10.36357 -10.03204 -9.81744 -9.52508 -9.27274 -8.48150 -5.97072 1.34043 1.37046 1.40725 1.53632 1.63680 2.01834 2.03552 2.28498 2.89030 3.18835 3.41265 3.48078 3.65210 3.70537 3.81862 3.85037 4.11427 4.17805 4.20393 4.30811 4.35070 4.37836 4.42763 4.49063 4.54413 4.57706 4.61990 4.70239 4.71768 4.79545 4.80128 4.87973 4.95855 5.06231 5.10899 5.16431 5.39376 5.54576 5.60860 5.87393 5.97913 6.09598 6.36974 6.40213 6.58830 6.89323 7.11142 7.23495 7.54371 8.10364 8.69199 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.001852 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.844625 B =15111.344041 C =15518.517560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.089 3.911 4 C 0.099 3.901 5 H 0.091 0.909 6 O -0.562 6.562 7 C 0.033 3.967 8 N -0.680 5.680 9 C 0.067 3.933 10 C 0.435 3.565 11 O -0.625 6.625 12 N -0.572 5.572 13 C -0.336 4.336 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.272 1.272 19 H -0.268 1.268 20 H -0.273 1.273 21 C 0.520 3.480 22 O -0.571 6.571 23 C -0.111 4.111 24 C -0.085 4.085 25 C -0.173 4.173 26 C -0.166 4.166 27 C -0.093 4.093 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.375 0.625 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.342 0.658 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.126 0.874 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.087 0.913 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.665 -19.787 -19.383 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C -0.035 4.035 4 C 0.038 3.962 5 H 0.109 0.891 6 O -0.368 6.368 7 C -0.097 4.097 8 N -0.312 5.312 9 C -0.066 4.066 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.213 4.213 16 N -0.560 5.560 17 Si 0.817 3.183 18 H -0.197 1.197 19 H -0.193 1.193 20 H -0.198 1.198 21 C 0.309 3.691 22 O -0.450 6.450 23 C -0.132 4.132 24 C -0.123 4.123 25 C -0.190 4.190 26 C -0.184 4.184 27 C -0.130 4.130 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.223 0.777 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.161 0.839 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.144 0.856 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.160 0.840 45 H 0.161 0.839 46 H 0.106 0.894 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.096 -20.456 -18.311 30.861 hybrid contribution 0.345 1.428 0.160 1.478 sum -13.751 -19.027 -18.150 29.674 Atomic orbital electron populations 1.22100 0.77156 1.05046 1.02931 1.47822 1.08303 1.05166 1.73019 1.22208 0.98966 0.86044 0.96250 1.22337 0.93469 0.86889 0.93473 0.89070 1.86564 1.29614 1.62934 1.57670 1.22693 1.01451 0.96648 0.88884 1.59900 1.32613 1.25942 1.12759 1.21533 1.01631 0.91070 0.92319 1.20946 0.82457 0.82155 0.92158 1.90502 1.57135 1.53614 1.49924 1.41925 1.54212 1.16679 1.08162 1.19665 1.39415 1.02644 0.84820 0.90506 1.26050 0.96066 0.95235 1.03913 1.69668 1.41738 1.11018 1.33578 0.84917 0.78675 0.77672 0.76994 1.19744 1.19278 1.19830 1.20766 0.87483 0.86067 0.74776 1.90637 1.16198 1.87569 1.50602 1.22235 1.00486 0.91346 0.99168 1.21245 1.02575 0.93553 0.94878 1.23402 1.00926 0.96398 0.98321 1.23434 0.99085 0.98855 0.97036 1.21353 0.99798 0.91672 1.00178 0.89852 0.91719 0.88597 0.86358 0.90585 0.77692 0.90144 0.91931 0.83950 0.88031 0.91174 0.76902 0.91242 0.85649 0.92787 0.88819 0.84023 0.83918 0.89411 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.58 127.77 1.22 1.74 16 2 N -0.61 -9.47 2.86 -846.77 -2.42 -11.89 16 3 C 0.09 1.38 5.07 86.38 0.44 1.82 16 4 C 0.10 2.11 3.42 30.60 0.10 2.22 16 5 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 6 O -0.56 -16.84 11.93 -136.64 -1.63 -18.47 16 7 C 0.03 0.72 5.35 86.30 0.46 1.18 16 8 N -0.68 -22.27 5.99 -517.94 -3.10 -25.37 16 9 C 0.07 2.33 6.17 85.56 0.53 2.86 16 10 C 0.44 21.44 7.82 87.66 0.69 22.13 16 11 O -0.63 -36.30 15.78 -3.08 -0.05 -36.35 16 12 N -0.57 -30.09 5.29 -306.99 -1.62 -31.71 16 13 C -0.34 -19.55 9.68 84.04 0.81 -18.73 16 14 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 15 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 16 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 17 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 C 0.52 10.79 6.42 87.66 0.56 11.35 16 22 O -0.57 -16.59 14.05 9.31 0.13 -16.46 16 23 C -0.11 -1.67 2.92 -10.42 -0.03 -1.70 16 24 C -0.09 -1.35 6.37 30.53 0.19 -1.15 16 25 C -0.17 -2.42 10.78 26.26 0.28 -2.14 16 26 C -0.17 -2.29 10.77 26.26 0.28 -2.01 16 27 C -0.09 -1.47 6.33 30.54 0.19 -1.28 16 28 H 0.08 0.29 7.28 -2.39 -0.02 0.27 16 29 H 0.06 0.49 8.13 -2.39 -0.02 0.47 16 30 H 0.10 0.41 7.80 -2.39 -0.02 0.39 16 31 H 0.12 1.03 7.92 -2.39 -0.02 1.02 16 32 H 0.08 1.39 7.50 -2.39 -0.02 1.38 16 33 H 0.38 10.79 8.63 -74.05 -0.64 10.15 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.34 11.92 8.43 -89.70 -0.76 11.16 16 37 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 40 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.13 1.12 6.59 -2.38 -0.02 1.11 16 42 H 0.05 1.20 7.88 -2.39 -0.02 1.18 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.14 1.50 8.06 -2.92 -0.02 1.48 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.48 6.94 -2.39 -0.02 1.46 16 Total: -1.00 -79.12 389.56 -1.30 -80.42 By element: Atomic # 1 Polarization: 48.99 SS G_CDS: -1.12 Total: 47.87 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 6.21 Total: 16.06 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -6.86 Total: -118.76 kcal Atomic # 8 Polarization: -69.73 SS G_CDS: -1.55 Total: -71.28 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -79.12 -1.30 -80.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677064708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.030 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds