Wall clock time and date at job start Tue Mar 31 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39630 * 120.07417 * 2 1 4 4 C 1.47790 * 120.14698 * 0.02562 * 3 2 1 5 5 O 1.21529 * 120.00085 * 354.63449 * 4 3 2 6 6 N 1.34781 * 119.99771 * 174.63912 * 4 3 2 7 7 C 1.38198 * 120.00019 * 183.82140 * 6 4 3 8 8 C 1.40005 * 119.79744 * 323.78388 * 7 6 4 9 9 C 1.35927 * 120.19995 * 180.25150 * 8 7 6 10 10 C 1.41657 * 119.79101 * 359.50752 * 9 8 7 11 11 C 1.39664 * 120.18969 * 180.24701 * 10 9 8 12 12 H 1.08006 * 119.99535 * 203.08703 * 11 10 9 13 13 C 1.46581 * 120.00398 * 23.09108 * 11 10 9 14 14 N 1.29497 * 119.99865 * 15.00041 * 13 11 10 15 15 Si 1.86797 * 119.99914 * 195.00197 * 13 11 10 16 16 H 1.48494 * 109.47293 * 90.00149 * 15 13 11 17 17 H 1.48508 * 109.46982 * 209.99959 * 15 13 11 18 18 H 1.48498 * 109.47275 * 329.99503 * 15 13 11 19 19 C 1.41647 * 119.61384 * 0.51124 * 10 9 8 20 20 C 1.35927 * 119.79238 * 359.73389 * 19 10 9 21 21 C 1.39589 * 119.70531 * 180.27602 * 3 2 1 22 22 C 1.37973 * 119.84899 * 359.44780 * 21 3 2 23 23 C 1.38341 * 120.14415 * 0.57787 * 22 21 3 24 24 C 1.37916 * 120.07750 * 180.02562 * 2 1 3 25 25 N 1.48021 * 119.92674 * 359.97438 * 24 2 1 26 26 O 1.31704 * 120.00239 * 185.78994 * 25 24 2 27 27 O 1.31702 * 119.99849 * 5.79412 * 25 24 2 28 28 H 1.09003 * 109.47511 * 93.16313 * 1 2 3 29 29 H 1.09000 * 109.47328 * 213.16681 * 1 2 3 30 30 H 1.09006 * 109.47304 * 333.16595 * 1 2 3 31 31 H 0.97002 * 120.00041 * 3.82015 * 6 4 3 32 32 H 1.08000 * 119.90042 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.10588 * 179.72328 * 9 8 7 34 34 H 0.96994 * 119.99931 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.10481 * 179.72358 * 19 10 9 36 36 H 1.08003 * 119.89642 * 179.97438 * 20 19 10 37 37 H 1.08002 * 120.07589 * 179.73149 * 21 3 2 38 38 H 1.08000 * 119.92534 * 180.29815 * 22 21 3 39 39 H 1.08007 * 119.84647 * 179.71512 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.2083 0.0000 4 6 1.4727 2.4911 0.0006 5 8 0.2614 2.4981 -0.0974 6 7 2.1467 3.6531 0.1096 7 6 1.4563 4.8476 0.1897 8 6 0.2764 5.0197 -0.5441 9 6 -0.4065 6.1930 -0.4754 10 6 0.0735 7.2394 0.3500 11 6 -0.6243 8.4465 0.4308 12 1 -0.1111 9.3478 0.7322 13 6 -2.0532 8.4902 0.1067 14 7 -2.7337 7.3911 0.0302 15 14 -2.8924 10.1314 -0.1961 16 1 -2.8086 10.4715 -1.6391 17 1 -4.3182 10.0404 0.2090 18 1 -2.2177 11.1869 0.6013 19 6 1.2683 7.0564 1.0885 20 6 1.9409 5.8782 1.0037 21 6 3.6025 1.1993 -0.0058 22 6 4.2816 -0.0017 0.0000 23 6 3.5821 -1.1952 -0.0005 24 6 2.1982 -1.1935 -0.0005 25 7 1.4581 -2.4754 -0.0005 26 8 2.1117 -3.6131 0.1140 27 8 0.1461 -2.4784 -0.1152 28 1 -0.3634 -0.0567 -1.0261 29 1 -0.3634 -0.8602 0.5622 30 1 -0.3634 0.9170 0.4639 31 1 3.1165 3.6510 0.1319 32 1 -0.0898 4.2195 -1.1701 33 1 -1.3140 6.3257 -1.0455 34 1 -3.6792 7.4201 -0.1839 35 1 1.6439 7.8505 1.7167 36 1 2.8523 5.7370 1.5658 37 1 4.1498 2.1304 -0.0103 38 1 5.3615 -0.0101 0.0003 39 1 4.1185 -2.1327 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000331316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:51 Heat of formation + Delta-G solvation = 55.405770 kcal Electronic energy + Delta-G solvation = -26042.596490 eV Core-core repulsion = 22113.217156 eV Total energy + Delta-G solvation = -3929.379335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.110 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.08965 -39.55563 -38.25317 -37.14061 -34.98907 -34.63630 -33.42810 -32.84041 -32.15528 -29.57175 -29.31247 -28.01627 -26.38157 -25.16252 -23.62928 -22.21971 -21.58231 -21.03633 -19.97067 -18.57242 -18.22594 -17.61717 -17.17741 -16.53895 -16.39096 -16.25587 -15.47961 -15.34935 -14.98707 -14.59055 -14.06952 -13.79136 -13.62266 -13.07726 -12.86785 -12.74091 -12.67859 -12.50086 -12.22556 -12.08563 -11.90693 -11.57879 -11.40317 -11.28421 -11.08537 -10.92155 -10.59603 -10.54244 -10.06495 -9.96207 -9.88857 -9.59288 -9.44824 -9.19077 -8.71559 -7.60579 -7.20780 -6.97767 -4.35416 -0.89848 0.29505 0.75749 0.91304 2.38106 2.68435 2.93551 2.96221 3.03460 3.11481 3.30238 3.53542 3.72980 3.99749 4.11258 4.27245 4.38990 4.41476 4.45057 4.76231 5.11735 5.18818 5.37364 5.47288 5.52932 5.61352 5.76571 5.89364 6.07015 6.09805 6.33449 6.40382 6.63090 6.69991 6.80428 6.94512 7.03895 7.23648 7.51769 7.56341 7.90392 7.96727 8.05122 8.14795 8.49756 8.59677 8.70450 8.96212 9.84804 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.024941 B = 0.002547 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.395665 B =10989.787507 C =11980.812464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.050 3.950 3 C -0.129 4.129 4 C 0.534 3.466 5 O -0.508 6.508 6 N -0.628 5.628 7 C -0.048 4.048 8 C -0.070 4.070 9 C -0.180 4.180 10 C 0.109 3.891 11 C -0.454 4.454 12 H 0.083 0.917 13 C 0.072 3.928 14 N -0.750 5.750 15 Si 0.918 3.082 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.257 1.257 19 C -0.233 4.233 20 C -0.087 4.087 21 C -0.031 4.031 22 C -0.133 4.133 23 C -0.034 4.034 24 C -0.020 4.020 25 N -0.013 5.013 26 O -0.187 6.187 27 O -0.157 6.157 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.391 0.609 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.290 0.710 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 -9.957 -0.928 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 C -0.133 4.133 4 C 0.321 3.679 5 O -0.386 6.386 6 N -0.269 5.269 7 C -0.140 4.140 8 C -0.090 4.090 9 C -0.200 4.200 10 C 0.106 3.894 11 C -0.481 4.481 12 H 0.101 0.899 13 C -0.155 4.155 14 N -0.371 5.371 15 Si 0.741 3.259 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.181 1.181 19 C -0.253 4.253 20 C -0.107 4.107 21 C -0.050 4.050 22 C -0.151 4.151 23 C -0.053 4.053 24 C -0.107 4.107 25 N 0.463 4.537 26 O -0.376 6.376 27 O -0.351 6.351 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.141 0.859 31 H 0.225 0.775 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.822 -9.531 -1.013 14.456 hybrid contribution 0.028 0.127 -0.031 0.134 sum 10.850 -9.404 -1.044 14.396 Atomic orbital electron populations 1.22086 0.87069 1.07812 1.05114 1.20084 0.99265 0.88852 0.87063 1.20050 0.93478 0.93763 1.06009 1.17833 0.87361 0.82947 0.79744 1.90689 1.13090 1.85745 1.49072 1.42501 1.08893 1.04988 1.70540 1.17026 1.00290 0.86269 1.10406 1.20455 0.94040 0.96993 0.97542 1.21080 1.02121 0.93921 1.02901 1.17659 0.90565 0.92789 0.88386 1.20688 0.92048 0.95887 1.39460 0.89920 1.27544 0.98082 0.98274 0.91589 1.69144 1.09651 1.30162 1.28111 0.86153 0.78216 0.81444 0.80045 1.18856 1.19977 1.18111 1.20496 1.00956 0.97358 1.06529 1.19998 0.98833 0.94302 0.97523 1.21890 0.93128 0.99626 0.90325 1.21122 1.01259 0.90363 1.02392 1.21261 0.90678 1.01230 0.92163 1.20133 0.91737 0.81442 1.17387 1.50364 1.03071 1.03828 0.96403 1.96260 1.68818 1.16530 1.56005 1.96216 0.89369 1.95445 1.54100 0.88779 0.88479 0.85939 0.77498 0.87904 0.86108 0.89757 0.88826 0.89519 0.83449 0.82816 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 7.91 36.00 0.28 -2.10 16 2 C 0.05 0.66 5.91 -104.22 -0.62 0.04 16 3 C -0.13 -1.59 5.87 -104.97 -0.62 -2.21 16 4 C 0.53 8.75 7.53 -12.35 -0.09 8.66 16 5 O -0.51 -10.24 10.62 5.34 0.06 -10.18 16 6 N -0.63 -10.08 5.21 -10.60 -0.06 -10.13 16 7 C -0.05 -1.00 6.28 -83.67 -0.53 -1.53 16 8 C -0.07 -1.68 8.58 -39.75 -0.34 -2.02 16 9 C -0.18 -4.64 8.72 -39.11 -0.34 -4.98 16 10 C 0.11 2.79 5.63 -106.76 -0.60 2.19 16 11 C -0.45 -11.44 9.29 -35.69 -0.33 -11.77 16 12 H 0.08 1.98 7.98 -52.48 -0.42 1.56 16 13 C 0.07 1.69 5.37 -15.17 -0.08 1.61 16 14 N -0.75 -18.37 10.82 55.99 0.61 -17.77 16 15 Si 0.92 17.35 29.67 -169.99 -5.04 12.31 16 16 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 17 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 19 C -0.23 -5.44 9.76 -39.11 -0.38 -5.82 16 20 C -0.09 -1.81 9.90 -39.75 -0.39 -2.20 16 21 C -0.03 -0.25 9.54 -39.17 -0.37 -0.62 16 22 C -0.13 -0.86 10.03 -39.64 -0.40 -1.26 16 23 C -0.03 -0.29 9.58 -39.49 -0.38 -0.67 16 24 C -0.02 -0.24 6.85 -80.01 -0.55 -0.79 16 25 N -0.01 -0.18 4.98 33.93 0.17 -0.01 16 26 O -0.19 -2.69 19.16 -31.57 -0.60 -3.29 16 27 O -0.16 -2.40 15.85 -31.57 -0.50 -2.90 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.10 1.37 5.43 -51.93 -0.28 1.09 16 30 H 0.12 2.03 5.10 -52.03 -0.27 1.77 16 31 H 0.39 4.56 6.87 -40.82 -0.28 4.28 16 32 H 0.10 2.45 6.30 -52.49 -0.33 2.11 16 33 H 0.12 3.22 5.96 -52.49 -0.31 2.90 16 34 H 0.29 6.36 8.27 -40.82 -0.34 6.02 16 35 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.09 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.15 0.79 6.43 -52.49 -0.34 0.45 16 38 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 39 H 0.16 1.05 7.58 -52.48 -0.40 0.65 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -30.02 336.59 -9.48 -39.50 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -3.45 Total: 10.89 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -5.74 Total: -23.48 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 0.72 Total: -27.91 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.05 Total: -16.38 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.04 Total: 12.31 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.02 -9.48 -39.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000331316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.907 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds