Wall clock time and date at job start Tue Mar 31 2020 05:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86800 * 120.00072 * 2 1 4 4 H 1.48508 * 109.47251 * 270.00371 * 3 2 1 5 5 H 1.48500 * 109.47157 * 29.99934 * 3 2 1 6 6 H 1.48494 * 109.47338 * 150.00111 * 3 2 1 7 7 C 1.39903 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99737 * 188.23448 * 7 2 1 9 9 C 1.41147 * 120.00287 * 8.24225 * 7 2 1 10 10 C 1.40865 * 120.16528 * 211.05217 * 9 7 2 11 11 C 1.36374 * 119.83037 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16847 * 0.02977 * 11 10 9 13 13 N 1.39239 * 119.83269 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99880 * 144.01043 * 13 12 11 15 15 O 1.21281 * 119.99765 * 4.57215 * 14 13 12 16 16 C 1.50699 * 120.00250 * 184.57219 * 14 13 12 17 17 C 1.50692 * 109.47372 * 180.02562 * 16 14 13 18 18 C 1.38258 * 120.00514 * 101.76551 * 17 16 14 19 19 C 1.38210 * 120.00137 * 179.97438 * 18 17 16 20 20 C 1.38259 * 120.00220 * 0.02562 * 19 18 17 21 21 C 1.38209 * 119.99895 * 359.97438 * 20 19 18 22 22 C 1.38212 * 119.99639 * 281.49368 * 17 16 14 23 23 N 1.48019 * 120.00252 * 0.02562 * 22 17 16 24 24 O 1.21798 * 119.99956 * 185.47804 * 23 22 17 25 25 O 1.21800 * 119.99629 * 5.48080 * 23 22 17 26 26 C 1.39478 * 120.33167 * 0.24623 * 12 11 10 27 27 C 1.36379 * 120.16632 * 359.44594 * 26 12 11 28 28 H 0.97007 * 119.99621 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.08437 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.91735 * 179.97438 * 11 10 9 31 31 H 0.96995 * 120.00046 * 324.00944 * 13 12 11 32 32 H 1.09001 * 109.47030 * 59.99750 * 16 14 13 33 33 H 1.09006 * 109.46615 * 300.00315 * 16 14 13 34 34 H 1.08004 * 119.99431 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.99934 * 180.02562 * 19 18 17 36 36 H 1.07994 * 119.99959 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.99949 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.91515 * 179.72715 * 26 12 11 39 39 H 1.08006 * 120.08504 * 180.25161 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5402 1.4402 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0798 -1.2165 0.1334 9 6 1.3134 -2.4276 -0.1763 10 6 1.7859 -3.6071 0.4318 11 6 1.1095 -4.7783 0.2570 12 6 -0.0470 -4.8104 -0.5221 13 7 -0.7318 -6.0101 -0.6964 14 6 -2.0778 -6.0140 -0.7651 15 8 -2.6882 -4.9660 -0.7585 16 6 -2.8243 -7.3203 -0.8500 17 6 -4.3051 -7.0493 -0.9163 18 6 -4.9680 -7.1232 -2.1274 19 6 -6.3263 -6.8751 -2.1881 20 6 -7.0222 -6.5526 -1.0377 21 6 -6.3596 -6.4787 0.1729 22 6 -5.0018 -6.7323 0.2345 23 7 -4.2933 -6.6585 1.5320 24 8 -4.9217 -6.4780 2.5596 25 8 -3.0818 -6.7782 1.5719 26 6 -0.5178 -3.6478 -1.1321 27 6 0.1444 -2.4678 -0.9613 28 1 -0.4850 0.8401 0.0004 29 1 2.6815 -3.5839 1.0349 30 1 1.4708 -5.6836 0.7222 31 1 -0.2401 -6.8431 -0.7684 32 1 -2.6039 -7.9227 0.0313 33 1 -2.5133 -7.8589 -1.7452 34 1 -4.4244 -7.3756 -3.0259 35 1 -6.8441 -6.9333 -3.1341 36 1 -8.0835 -6.3583 -1.0853 37 1 -6.9031 -6.2263 1.0714 38 1 -1.4115 -3.6811 -1.7376 39 1 -0.2236 -1.5675 -1.4310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000555151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:14 Heat of formation + Delta-G solvation = 15.438518 kcal Electronic energy + Delta-G solvation = -26682.919070 eV Core-core repulsion = 22751.806626 eV Total energy + Delta-G solvation = -3931.112445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.19537 -40.04423 -39.15503 -37.23155 -36.46985 -34.41559 -33.30560 -32.82093 -32.06755 -29.56682 -29.26680 -28.09909 -26.26754 -24.77116 -22.91980 -22.45762 -21.37378 -20.90423 -19.61126 -19.02719 -18.49103 -17.52940 -17.25366 -16.97498 -16.51474 -16.06916 -15.96030 -15.15692 -14.97352 -14.53722 -14.00092 -13.85556 -13.67603 -13.16270 -13.02801 -12.63981 -12.49454 -12.37223 -12.02606 -11.77962 -11.68971 -11.44309 -11.33281 -11.11745 -11.00018 -10.89012 -10.68592 -10.46185 -9.89350 -9.85769 -9.78561 -9.54712 -9.33920 -9.02066 -8.66437 -7.47180 -6.89118 -6.61420 -4.26532 -0.17278 0.69708 1.31529 1.50425 2.63722 3.02602 3.04432 3.11999 3.14504 3.16353 3.37191 3.79322 4.00390 4.10125 4.15988 4.40636 4.66807 4.68342 4.74367 4.88302 5.11433 5.16760 5.25644 5.43473 5.58048 5.73053 5.76667 5.80567 6.07849 6.22211 6.43908 6.51355 6.83973 7.04376 7.09836 7.22744 7.34318 7.65870 7.72579 7.74987 8.00549 8.11845 8.24553 8.36964 8.69333 8.80408 8.95925 9.05699 10.32360 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.003022 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.247334 B = 9264.338896 C = 9535.187800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.105 3.895 10 C -0.208 4.208 11 C -0.106 4.106 12 C 0.004 3.996 13 N -0.646 5.646 14 C 0.520 3.480 15 O -0.531 6.531 16 C -0.121 4.121 17 C 0.009 3.991 18 C -0.113 4.113 19 C -0.068 4.068 20 C -0.123 4.123 21 C -0.055 4.055 22 C -0.027 4.027 23 N 0.034 4.966 24 O -0.170 6.170 25 O -0.149 6.149 26 C -0.090 4.090 27 C -0.148 4.148 28 H 0.279 0.721 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.395 0.605 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.103 0.897 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.940 -15.794 -5.681 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.103 3.897 10 C -0.228 4.228 11 C -0.126 4.126 12 C -0.088 4.088 13 N -0.288 5.288 14 C 0.305 3.695 15 O -0.408 6.408 16 C -0.161 4.161 17 C 0.007 3.993 18 C -0.132 4.132 19 C -0.086 4.086 20 C -0.142 4.142 21 C -0.074 4.074 22 C -0.110 4.110 23 N 0.552 4.448 24 O -0.383 6.383 25 O -0.366 6.366 26 C -0.110 4.110 27 C -0.168 4.168 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.229 0.771 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.121 0.879 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.941 -14.915 -6.249 20.711 hybrid contribution 0.692 0.438 0.495 0.957 sum -12.249 -14.476 -5.754 19.817 Atomic orbital electron populations 1.69830 1.07348 1.28915 1.36677 1.25899 0.94841 1.01163 0.92619 0.86260 0.80271 0.80704 0.79100 1.19455 1.20364 1.18716 1.19512 0.95324 0.90400 1.44093 0.90540 1.17681 0.91632 0.92086 0.88329 1.20635 1.02893 0.93326 1.05995 1.20089 0.96316 0.97384 0.98814 1.17193 0.97742 0.85541 1.08367 1.42796 1.05406 1.09248 1.71395 1.19825 0.82678 0.89750 0.77199 1.90724 1.67591 1.33027 1.49422 1.21067 0.89865 0.98801 1.06356 1.19291 0.95477 0.93329 0.91219 1.21126 0.94761 1.00876 0.96397 1.21563 0.94078 0.93762 0.99158 1.21179 1.01031 1.00783 0.91164 1.21049 0.91223 0.94623 1.00488 1.20925 0.93356 1.13023 0.83712 1.43496 1.01102 0.97608 1.02627 1.94509 1.68047 1.52667 1.23076 1.94523 0.96083 1.52516 1.93442 1.20532 0.98871 0.92311 0.99309 1.21040 0.98268 0.96218 1.01265 0.91019 0.88551 0.89004 0.77146 0.85790 0.87692 0.83664 0.84024 0.83709 0.83043 0.87857 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.96 10.86 55.55 0.60 -21.36 16 2 C 0.07 1.86 5.28 -17.34 -0.09 1.77 16 3 Si 0.91 19.39 29.57 -169.99 -5.03 14.36 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.61 9.04 -37.86 -0.34 -12.95 16 8 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 9 C 0.11 2.89 5.53 -106.80 -0.59 2.30 16 10 C -0.21 -5.18 9.74 -39.26 -0.38 -5.57 16 11 C -0.11 -2.39 9.90 -39.79 -0.39 -2.78 16 12 C 0.00 0.08 6.29 -83.57 -0.53 -0.44 16 13 N -0.65 -11.49 5.30 -9.74 -0.05 -11.55 16 14 C 0.52 9.24 5.96 -10.99 -0.07 9.17 16 15 O -0.53 -11.96 13.37 5.56 0.07 -11.89 16 16 C -0.12 -1.48 5.13 -29.04 -0.15 -1.62 16 17 C 0.01 0.11 4.46 -104.63 -0.47 -0.36 16 18 C -0.11 -1.03 9.67 -39.58 -0.38 -1.41 16 19 C -0.07 -0.50 10.05 -39.58 -0.40 -0.89 16 20 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 21 C -0.05 -0.60 9.56 -39.58 -0.38 -0.98 16 22 C -0.03 -0.38 6.64 -79.94 -0.53 -0.91 16 23 N 0.03 0.57 4.45 33.96 0.15 0.72 16 24 O -0.17 -2.93 18.46 -29.46 -0.54 -3.48 16 25 O -0.15 -2.73 14.16 -29.75 -0.42 -3.15 16 26 C -0.09 -2.30 8.61 -39.79 -0.34 -2.64 16 27 C -0.15 -4.06 8.59 -39.26 -0.34 -4.40 16 28 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 29 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.40 5.31 8.82 -40.82 -0.36 4.95 16 32 H 0.12 1.45 6.19 -51.93 -0.32 1.13 16 33 H 0.10 0.85 7.98 -51.93 -0.41 0.43 16 34 H 0.15 0.94 8.02 -52.48 -0.42 0.52 16 35 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 36 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.15 1.46 7.62 -52.49 -0.40 1.06 16 38 H 0.10 2.63 6.29 -52.49 -0.33 2.30 16 39 H 0.12 3.43 6.30 -52.48 -0.33 3.10 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -35.07 341.60 -9.66 -44.73 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -3.82 Total: 9.54 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -5.77 Total: -23.08 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.70 Total: -32.18 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.89 Total: -18.51 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.07 -9.66 -44.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000555151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.167 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds