Wall clock time and date at job start Tue Mar 31 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38143 * 119.97520 * 2 1 4 4 C 1.38719 * 119.95732 * 180.29422 * 3 2 1 5 5 O 1.35925 * 120.04695 * 179.74958 * 4 3 2 6 6 C 1.42902 * 116.99559 * 359.97392 * 5 4 3 7 7 C 1.50697 * 109.46639 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00363 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99813 * 179.97438 * 7 6 5 10 10 N 1.40102 * 120.00180 * 179.97438 * 9 7 6 11 11 C 1.34775 * 119.99844 * 180.02562 * 10 9 7 12 12 O 1.21684 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.46376 * 119.99783 * 180.02562 * 11 10 9 14 14 H 1.08004 * 119.99870 * 353.93275 * 13 11 10 15 15 C 1.40042 * 120.00268 * 173.93877 * 13 11 10 16 16 N 1.30673 * 120.00048 * 6.14950 * 15 13 11 17 17 Si 1.86804 * 120.00311 * 186.14801 * 15 13 11 18 18 H 1.48498 * 109.47046 * 94.98544 * 17 15 13 19 19 H 1.48499 * 109.47165 * 214.98471 * 17 15 13 20 20 H 1.48503 * 109.46909 * 334.98270 * 17 15 13 21 21 C 1.38726 * 119.91280 * 359.72462 * 4 3 2 22 22 C 1.38142 * 119.95972 * 359.97438 * 21 4 3 23 23 C 1.50693 * 119.98111 * 180.02562 * 22 21 4 24 24 C 1.38363 * 119.98004 * 179.74222 * 2 1 3 25 25 Cl 1.73599 * 119.95839 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.47290 * 270.25329 * 1 2 3 27 27 H 1.08996 * 109.47157 * 30.25920 * 1 2 3 28 28 H 1.09005 * 109.46650 * 150.25614 * 1 2 3 29 29 H 1.08006 * 120.02328 * 0.02562 * 3 2 1 30 30 H 1.09000 * 109.47090 * 299.99960 * 6 5 4 31 31 H 1.08994 * 109.47163 * 60.00277 * 6 5 4 32 32 H 0.97003 * 119.99786 * 0.02562 * 9 7 6 33 33 H 0.96999 * 119.99491 * 0.02562 * 10 9 7 34 34 H 0.97001 * 120.00385 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.01797 * 179.97438 * 21 4 3 36 36 H 1.09006 * 109.47375 * 269.98528 * 23 22 21 37 37 H 1.09001 * 109.47436 * 29.98135 * 23 22 21 38 38 H 1.09002 * 109.47429 * 149.98283 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1967 0.0000 4 6 3.5844 1.1962 -0.0062 5 8 4.2654 2.3726 -0.0113 6 6 3.4883 3.5719 -0.0106 7 6 4.4076 4.7659 -0.0174 8 8 5.6098 4.6058 -0.0228 9 7 3.8938 6.0120 -0.0185 10 7 4.7484 7.1221 -0.0243 11 6 4.2346 8.3681 -0.0248 12 8 3.0284 8.5288 -0.0198 13 6 5.1275 9.5279 -0.0314 14 1 6.1943 9.3887 0.0630 15 6 4.5985 10.8182 -0.1601 16 7 3.3041 10.9973 -0.1533 17 14 5.7431 12.2833 -0.3413 18 1 5.9224 12.5962 -1.7818 19 1 5.1563 13.4586 0.3512 20 1 7.0606 11.9598 0.2628 21 6 4.2759 -0.0064 -0.0066 22 6 3.5821 -1.2010 -0.0003 23 6 4.3327 -2.5077 -0.0001 24 6 2.1984 -1.1985 0.0054 25 17 1.3288 -2.7009 0.0128 26 1 -0.3634 0.0045 1.0276 27 1 -0.3633 0.8876 -0.5178 28 1 -0.3633 -0.8923 -0.5099 29 1 1.6572 2.1320 0.0004 30 1 2.8559 3.5956 -0.8981 31 1 2.8632 3.5993 0.8818 32 1 2.9323 6.1401 -0.0145 33 1 5.7099 6.9939 -0.0278 34 1 2.9376 11.8911 -0.2421 35 1 5.3559 -0.0088 -0.0118 36 1 4.5089 -2.8257 -1.0277 37 1 5.2879 -2.3781 0.5089 38 1 3.7445 -3.2647 0.5187 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002026168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:59 Heat of formation + Delta-G solvation = -69.186002 kcal Electronic energy + Delta-G solvation = -23772.805886 eV Core-core repulsion = 19835.590997 eV Total energy + Delta-G solvation = -3937.214889 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72363 -39.44679 -38.16723 -37.10748 -36.43257 -34.23365 -34.06086 -32.62792 -31.45513 -30.58825 -28.33624 -27.55267 -26.97049 -25.96298 -22.21852 -21.61781 -20.61835 -20.58230 -18.17230 -17.78917 -16.94051 -16.73606 -16.51419 -16.40880 -15.94931 -15.22812 -14.84899 -14.42615 -14.20914 -14.18229 -13.89228 -13.54602 -13.48495 -13.10627 -13.03653 -12.82728 -12.62408 -12.35301 -12.32258 -12.05410 -11.99210 -11.58270 -11.45006 -11.19255 -10.86335 -10.75785 -10.70461 -10.40819 -10.22123 -9.74104 -9.05609 -9.01770 -8.37060 -8.03487 -7.27019 -6.44307 -4.88065 0.87045 0.92521 1.90570 2.23625 2.72747 3.05341 3.12357 3.16250 3.23850 3.35052 4.01262 4.26165 4.31297 4.35033 4.52257 4.62985 4.83636 4.88765 4.89782 4.97367 5.10270 5.26387 5.27792 5.30277 5.40170 5.49580 5.54013 5.58662 5.79185 5.84844 5.96766 6.04596 6.25541 6.99616 7.19818 7.24550 7.70437 7.82965 8.10122 8.66495 8.79383 9.13141 10.29726 10.48815 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.001929 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.902749 B =14508.138797 C =15266.966991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.029 4.029 3 C -0.209 4.209 4 C 0.149 3.851 5 O -0.282 6.282 6 C 0.050 3.950 7 C 0.500 3.500 8 O -0.537 6.537 9 N -0.505 5.505 10 N -0.558 5.558 11 C 0.554 3.446 12 O -0.581 6.581 13 C -0.531 4.531 14 H 0.077 0.923 15 C 0.087 3.913 16 N -0.762 5.762 17 Si 0.918 3.082 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.147 4.147 22 C -0.032 4.032 23 C -0.120 4.120 24 C -0.081 4.081 25 Cl -0.071 7.071 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.425 0.575 33 H 0.415 0.585 34 H 0.273 0.727 35 H 0.142 0.858 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 -23.844 0.063 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.030 4.030 3 C -0.228 4.228 4 C 0.103 3.897 5 O -0.193 6.193 6 C -0.030 4.030 7 C 0.283 3.717 8 O -0.414 6.414 9 N -0.249 5.249 10 N -0.313 5.313 11 C 0.360 3.640 12 O -0.462 6.462 13 C -0.569 4.569 14 H 0.095 0.905 15 C -0.134 4.134 16 N -0.390 5.390 17 Si 0.742 3.258 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.165 4.165 22 C -0.033 4.033 23 C -0.176 4.176 24 C -0.108 4.108 25 Cl -0.042 7.042 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.157 0.843 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.266 0.734 33 H 0.254 0.746 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.233 -23.785 0.059 24.159 hybrid contribution 0.135 0.712 -0.100 0.731 sum -4.098 -23.073 -0.041 23.434 Atomic orbital electron populations 1.20917 0.89999 1.03715 1.03207 1.19503 0.96648 0.90659 0.96208 1.21114 0.92798 0.98739 1.10140 1.19064 0.90395 0.86010 0.94240 1.86181 1.34091 1.11197 1.87853 1.22354 0.93539 0.82879 1.04220 1.19794 0.89418 0.82709 0.79814 1.90728 1.14745 1.85241 1.50637 1.44375 1.08394 0.99344 1.72742 1.45961 1.05287 0.96432 1.83572 1.18675 0.89253 0.79102 0.76946 1.90611 1.15518 1.84038 1.56036 1.20688 0.93821 0.88557 1.53830 0.90500 1.25724 0.95345 0.99830 0.92474 1.70006 1.12035 1.23172 1.33817 0.86177 0.80663 0.79928 0.79031 1.19563 1.20264 1.18582 1.20220 1.00795 0.88329 1.07186 1.19494 0.91353 0.95695 0.96731 1.20894 1.00192 0.93309 1.03210 1.20486 0.91558 0.86643 1.12090 1.98328 1.76420 1.32316 1.97145 0.90309 0.90795 0.90607 0.84304 0.88592 0.88583 0.73429 0.74587 0.91670 0.84043 0.90313 0.90718 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.61 36.01 0.35 -0.54 16 2 C -0.03 -0.28 5.88 -104.61 -0.62 -0.89 16 3 C -0.21 -2.07 8.69 -39.44 -0.34 -2.41 16 4 C 0.15 1.74 6.69 -39.22 -0.26 1.48 16 5 O -0.28 -3.89 9.67 -39.42 -0.38 -4.27 16 6 C 0.05 0.60 5.22 36.00 0.19 0.79 16 7 C 0.50 8.53 8.02 -10.99 -0.09 8.44 16 8 O -0.54 -11.20 16.34 -14.35 -0.23 -11.43 16 9 N -0.51 -9.46 6.26 31.22 0.20 -9.26 16 10 N -0.56 -12.60 6.26 30.19 0.19 -12.42 16 11 C 0.55 14.97 7.86 -12.99 -0.10 14.86 16 12 O -0.58 -17.34 14.88 5.20 0.08 -17.26 16 13 C -0.53 -14.25 9.53 -35.63 -0.34 -14.59 16 14 H 0.08 1.89 7.85 -52.48 -0.41 1.48 16 15 C 0.09 2.31 5.49 -17.37 -0.10 2.21 16 16 N -0.76 -21.53 11.85 55.55 0.66 -20.87 16 17 Si 0.92 19.17 29.56 -169.99 -5.03 14.14 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 C -0.15 -1.57 9.64 -39.44 -0.38 -1.95 16 22 C -0.03 -0.30 5.88 -104.61 -0.62 -0.92 16 23 C -0.12 -0.85 9.61 36.00 0.35 -0.50 16 24 C -0.08 -0.79 6.31 -39.49 -0.25 -1.04 16 25 Cl -0.07 -0.61 25.62 -51.86 -1.33 -1.94 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.08 0.53 6.90 -51.93 -0.36 0.17 16 29 H 0.14 1.10 6.30 -52.48 -0.33 0.77 16 30 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16 31 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16 32 H 0.43 7.33 8.00 -182.59 -1.46 5.87 16 33 H 0.41 8.96 7.98 -182.60 -1.46 7.51 16 34 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 35 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.08 0.51 6.90 -51.93 -0.36 0.15 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -34.42 348.26 -9.23 -43.65 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.41 Total: 9.46 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.21 Total: 4.95 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 1.04 Total: -42.55 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.54 Total: -32.96 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.33 Total: -1.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.42 -9.23 -43.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002026168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.539 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds