Wall clock time and date at job start Tue Mar 31 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38143 * 119.97520 * 2 1 4 4 C 1.38719 * 119.95732 * 180.29422 * 3 2 1 5 5 O 1.35925 * 120.04695 * 179.74958 * 4 3 2 6 6 C 1.42902 * 116.99559 * 359.97392 * 5 4 3 7 7 C 1.50697 * 109.46639 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00363 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99813 * 179.97438 * 7 6 5 10 10 N 1.40102 * 120.00180 * 179.97438 * 9 7 6 11 11 C 1.34775 * 119.99844 * 180.02562 * 10 9 7 12 12 O 1.21684 * 120.00145 * 0.02562 * 11 10 9 13 13 C 1.46376 * 119.99783 * 180.02562 * 11 10 9 14 14 H 1.08004 * 119.99870 * 353.93275 * 13 11 10 15 15 C 1.40042 * 120.00268 * 173.93877 * 13 11 10 16 16 N 1.30673 * 120.00048 * 6.14950 * 15 13 11 17 17 Si 1.86804 * 120.00311 * 186.14801 * 15 13 11 18 18 H 1.48498 * 109.47046 * 94.98544 * 17 15 13 19 19 H 1.48499 * 109.47165 * 214.98471 * 17 15 13 20 20 H 1.48503 * 109.46909 * 334.98270 * 17 15 13 21 21 C 1.38726 * 119.91280 * 359.72462 * 4 3 2 22 22 C 1.38142 * 119.95972 * 359.97438 * 21 4 3 23 23 C 1.50693 * 119.98111 * 180.02562 * 22 21 4 24 24 C 1.38363 * 119.98004 * 179.74222 * 2 1 3 25 25 Cl 1.73599 * 119.95839 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.47290 * 270.25329 * 1 2 3 27 27 H 1.08996 * 109.47157 * 30.25920 * 1 2 3 28 28 H 1.09005 * 109.46650 * 150.25614 * 1 2 3 29 29 H 1.08006 * 120.02328 * 0.02562 * 3 2 1 30 30 H 1.09000 * 109.47090 * 299.99960 * 6 5 4 31 31 H 1.08994 * 109.47163 * 60.00277 * 6 5 4 32 32 H 0.97003 * 119.99786 * 0.02562 * 9 7 6 33 33 H 0.96999 * 119.99491 * 0.02562 * 10 9 7 34 34 H 0.97001 * 120.00385 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.01797 * 179.97438 * 21 4 3 36 36 H 1.09006 * 109.47375 * 269.98528 * 23 22 21 37 37 H 1.09001 * 109.47436 * 29.98135 * 23 22 21 38 38 H 1.09002 * 109.47429 * 149.98283 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1967 0.0000 4 6 3.5844 1.1962 -0.0062 5 8 4.2654 2.3726 -0.0113 6 6 3.4883 3.5719 -0.0106 7 6 4.4076 4.7659 -0.0174 8 8 5.6098 4.6058 -0.0228 9 7 3.8938 6.0120 -0.0185 10 7 4.7484 7.1221 -0.0243 11 6 4.2346 8.3681 -0.0248 12 8 3.0284 8.5288 -0.0198 13 6 5.1275 9.5279 -0.0314 14 1 6.1943 9.3887 0.0630 15 6 4.5985 10.8182 -0.1601 16 7 3.3041 10.9973 -0.1533 17 14 5.7431 12.2833 -0.3413 18 1 5.9224 12.5962 -1.7818 19 1 5.1563 13.4586 0.3512 20 1 7.0606 11.9598 0.2628 21 6 4.2759 -0.0064 -0.0066 22 6 3.5821 -1.2010 -0.0003 23 6 4.3327 -2.5077 -0.0001 24 6 2.1984 -1.1985 0.0054 25 17 1.3288 -2.7009 0.0128 26 1 -0.3634 0.0045 1.0276 27 1 -0.3633 0.8876 -0.5178 28 1 -0.3633 -0.8923 -0.5099 29 1 1.6572 2.1320 0.0004 30 1 2.8559 3.5956 -0.8981 31 1 2.8632 3.5993 0.8818 32 1 2.9323 6.1401 -0.0145 33 1 5.7099 6.9939 -0.0278 34 1 2.9376 11.8911 -0.2421 35 1 5.3559 -0.0088 -0.0118 36 1 4.5089 -2.8257 -1.0277 37 1 5.2879 -2.3781 0.5089 38 1 3.7445 -3.2647 0.5187 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002026168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:59 Heat of formation + Delta-G solvation = -92.190702 kcal Electronic energy + Delta-G solvation = -23773.803445 eV Core-core repulsion = 19835.590997 eV Total energy + Delta-G solvation = -3938.212447 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65270 -40.79070 -39.38315 -38.72327 -37.17453 -35.98792 -34.72210 -34.64840 -32.69237 -31.78392 -29.53073 -28.21692 -28.12094 -27.42886 -23.19434 -22.61559 -22.41099 -21.70587 -19.61200 -18.91824 -18.43741 -17.90319 -17.53785 -17.50863 -17.39972 -16.83712 -15.93934 -15.76706 -15.49518 -15.21559 -14.97329 -14.66310 -14.57691 -14.30096 -14.08200 -13.88977 -13.70087 -13.30689 -13.03857 -12.96203 -12.90865 -12.84061 -12.71010 -12.69735 -12.26979 -12.03385 -11.99628 -11.57831 -11.51493 -11.19771 -10.97019 -10.14368 -9.76298 -9.16418 -9.06298 -8.41974 -6.95981 0.13525 0.16114 0.90488 1.20327 1.32980 1.43868 1.44593 1.60104 2.15248 2.31224 2.37476 2.48681 3.17524 3.47975 3.60404 3.68895 3.81717 3.96103 4.02470 4.04808 4.19893 4.28998 4.51368 4.62856 4.73949 4.74786 4.78198 4.94498 5.15611 5.23688 5.26321 5.26419 5.35199 5.42604 5.54930 5.93708 6.06566 6.19893 6.32087 6.76023 7.12493 7.22047 8.28968 8.53450 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.001929 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.902749 B =14508.138797 C =15266.966991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.035 4.035 3 C -0.209 4.209 4 C 0.131 3.869 5 O -0.309 6.309 6 C 0.058 3.942 7 C 0.504 3.496 8 O -0.577 6.577 9 N -0.506 5.506 10 N -0.558 5.558 11 C 0.544 3.456 12 O -0.618 6.618 13 C -0.560 4.560 14 H 0.092 0.908 15 C 0.035 3.965 16 N -0.811 5.811 17 Si 1.003 2.997 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.250 1.250 21 C -0.161 4.161 22 C -0.035 4.035 23 C -0.119 4.119 24 C -0.091 4.091 25 Cl -0.062 7.062 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.160 0.840 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.432 0.568 33 H 0.418 0.582 34 H 0.280 0.720 35 H 0.142 0.858 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -24.392 -0.037 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.036 4.036 3 C -0.228 4.228 4 C 0.085 3.915 5 O -0.222 6.222 6 C -0.021 4.021 7 C 0.290 3.710 8 O -0.455 6.455 9 N -0.251 5.251 10 N -0.310 5.310 11 C 0.350 3.650 12 O -0.503 6.503 13 C -0.598 4.598 14 H 0.110 0.890 15 C -0.182 4.182 16 N -0.439 5.439 17 Si 0.821 3.179 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.174 1.174 21 C -0.179 4.179 22 C -0.036 4.036 23 C -0.175 4.175 24 C -0.118 4.118 25 Cl -0.033 7.033 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.177 0.823 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.274 0.726 33 H 0.259 0.741 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.402 -24.392 -0.038 24.786 hybrid contribution 0.170 0.691 -0.059 0.714 sum -4.232 -23.702 -0.097 24.076 Atomic orbital electron populations 1.20974 0.88411 1.04434 1.03945 1.19809 0.97869 0.90410 0.95475 1.21326 0.92103 0.99853 1.09519 1.19238 0.91237 0.85317 0.95688 1.86117 1.35418 1.12046 1.88626 1.22406 0.92040 0.80294 1.07367 1.20747 0.89617 0.83098 0.77559 1.90708 1.16921 1.85802 1.52114 1.44528 1.08242 0.98755 1.73554 1.45479 1.05880 0.97149 1.82510 1.18863 0.88861 0.80534 0.76778 1.90566 1.16856 1.85067 1.57840 1.21224 0.94739 0.89512 1.54326 0.89028 1.26922 0.97072 1.03051 0.91181 1.70125 1.14476 1.24537 1.34790 0.84922 0.78305 0.75279 0.79352 1.18691 1.19421 1.17356 1.20374 1.01070 0.88697 1.07793 1.19736 0.91642 0.96196 0.96041 1.20950 1.00425 0.92212 1.03949 1.20702 0.91858 0.87313 1.11898 1.98329 1.76167 1.31726 1.97086 0.89459 0.89531 0.90482 0.82250 0.85298 0.85283 0.72612 0.74147 0.90983 0.84058 0.89432 0.89830 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.61 71.24 0.68 -0.78 16 2 C -0.03 -0.59 5.88 -19.86 -0.12 -0.71 16 3 C -0.21 -3.71 8.69 22.36 0.19 -3.52 16 4 C 0.13 2.91 6.69 22.50 0.15 3.06 16 5 O -0.31 -8.25 9.67 -73.67 -0.71 -8.96 16 6 C 0.06 1.29 5.22 71.23 0.37 1.66 16 7 C 0.50 16.89 8.02 87.66 0.70 17.59 16 8 O -0.58 -24.18 16.34 16.01 0.26 -23.92 16 9 N -0.51 -18.84 6.26 -173.53 -1.09 -19.92 16 10 N -0.56 -25.55 6.26 -176.63 -1.10 -26.65 16 11 C 0.54 29.92 7.86 86.36 0.68 30.60 16 12 O -0.62 -37.80 14.88 -4.30 -0.06 -37.87 16 13 C -0.56 -30.33 9.53 24.83 0.24 -30.10 16 14 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 15 C 0.03 1.82 5.49 85.30 0.47 2.29 16 16 N -0.81 -46.40 11.85 21.83 0.26 -46.14 16 17 Si 1.00 38.84 29.56 68.60 2.03 40.87 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 20 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 21 C -0.16 -3.35 9.64 22.36 0.22 -3.14 16 22 C -0.04 -0.64 5.88 -19.86 -0.12 -0.75 16 23 C -0.12 -1.54 9.61 71.23 0.68 -0.86 16 24 C -0.09 -1.63 6.31 22.33 0.14 -1.49 16 25 Cl -0.06 -0.96 25.62 -2.72 -0.07 -1.03 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.83 8.09 -2.39 -0.02 0.81 16 28 H 0.08 0.92 6.90 -2.38 -0.02 0.90 16 29 H 0.16 2.02 6.30 -2.91 -0.02 2.00 16 30 H 0.13 2.04 7.66 -2.39 -0.02 2.02 16 31 H 0.13 2.04 7.66 -2.39 -0.02 2.03 16 32 H 0.43 14.75 8.00 -213.32 -1.71 13.04 16 33 H 0.42 18.39 7.98 -213.32 -1.70 16.69 16 34 H 0.28 14.41 8.29 -92.71 -0.77 13.64 16 35 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 38 H 0.08 0.97 6.90 -2.39 -0.02 0.95 16 Total: -1.00 -75.95 348.26 1.54 -74.42 By element: Atomic # 1 Polarization: 37.63 SS G_CDS: -2.27 Total: 35.36 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 4.30 Total: 13.85 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -1.93 Total: -92.72 kcal Atomic # 8 Polarization: -70.23 SS G_CDS: -0.51 Total: -70.74 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.07 Total: -1.03 kcal Total: -75.95 1.54 -74.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002026168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.775 kcal (2) G-P(sol) polarization free energy of solvation -75.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds