Wall clock time and date at job start Tue Mar 31 2020 05:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 110.65681 * 2 1 4 4 C 1.38268 * 119.93974 * 92.64887 * 3 2 1 5 5 C 1.38148 * 120.05288 * 179.72509 * 4 3 2 6 6 C 1.38739 * 119.94251 * 0.54301 * 5 4 3 7 7 O 1.35897 * 120.05631 * 179.74898 * 6 5 4 8 8 C 1.42908 * 116.99907 * 359.97438 * 7 6 5 9 9 F 1.39901 * 109.46758 * 299.99820 * 8 7 6 10 10 F 1.39905 * 109.46976 * 59.99869 * 8 7 6 11 11 C 1.38732 * 119.88863 * 359.72652 * 6 5 4 12 12 C 1.38141 * 119.94543 * 0.02562 * 11 6 5 13 13 N 1.47316 * 110.59240 * 237.08808 * 2 1 3 14 14 C 1.34527 * 106.61904 * 241.24885 * 13 2 1 15 15 O 1.21527 * 123.77113 * 180.20682 * 14 13 2 16 16 N 1.33787 * 112.45795 * 0.38577 * 14 13 2 17 17 C 1.37512 * 124.17848 * 179.85731 * 16 14 13 18 18 H 1.08001 * 120.00037 * 145.33991 * 17 16 14 19 19 C 1.38893 * 120.00115 * 325.34380 * 17 16 14 20 20 N 1.31384 * 120.00018 * 147.41789 * 19 17 16 21 21 Si 1.86799 * 120.00106 * 327.41327 * 19 17 16 22 22 H 1.48506 * 109.46992 * 270.00347 * 21 19 17 23 23 H 1.48490 * 109.47264 * 150.00212 * 21 19 17 24 24 H 1.48501 * 109.46845 * 29.99793 * 21 19 17 25 25 C 1.34769 * 111.64510 * 359.59809 * 16 14 13 26 26 O 1.21236 * 127.16002 * 180.19206 * 25 16 14 27 27 H 1.09002 * 109.46314 * 297.78350 * 1 2 3 28 28 H 1.09000 * 109.47184 * 57.78079 * 1 2 3 29 29 H 1.08998 * 109.47552 * 177.78969 * 1 2 3 30 30 H 1.07991 * 119.97472 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.03322 * 180.26891 * 5 4 3 32 32 H 1.09000 * 109.46716 * 179.97438 * 8 7 6 33 33 H 1.07997 * 120.02673 * 180.02562 * 11 6 5 34 34 H 1.07998 * 119.97272 * 180.02562 * 12 11 6 35 35 H 0.96999 * 126.68783 * 61.51608 * 13 2 1 36 36 H 0.96995 * 120.00044 * 354.59690 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4101 0.0000 4 6 2.3569 2.0363 1.1969 5 6 2.8497 3.3268 1.1993 6 6 3.0377 3.9986 0.0001 7 8 3.5175 5.2701 0.0001 8 6 3.8069 5.8543 1.2718 9 9 2.6407 5.8926 2.0436 10 9 4.7754 5.0869 1.9279 11 6 2.7354 3.3701 -1.1992 12 6 2.2476 2.0776 -1.1965 13 7 2.0482 -0.7493 -1.1577 14 6 2.7639 -1.7753 -0.6629 15 8 3.3367 -2.5947 -1.3539 16 7 2.7715 -1.7950 0.6748 17 6 3.4259 -2.7399 1.4297 18 1 3.8761 -2.4617 2.3712 19 6 3.5079 -4.0519 0.9815 20 7 4.5647 -4.7787 1.2666 21 14 2.1157 -4.7833 -0.0266 22 1 1.1268 -5.4174 0.8819 23 1 2.6611 -5.8054 -0.9555 24 1 1.4523 -3.7084 -0.8074 25 6 2.0634 -0.7711 1.1911 26 8 1.8886 -0.5196 2.3641 27 1 -0.3632 0.4791 0.9092 28 1 -0.3633 0.5479 -0.8694 29 1 -0.3634 -1.0268 -0.0396 30 1 2.2059 1.5146 2.1303 31 1 3.0843 3.8141 2.1342 32 1 4.1821 6.8676 1.1291 33 1 2.8812 3.8908 -2.1340 34 1 2.0126 1.5877 -2.1298 35 1 1.9047 -0.5410 -2.0941 36 1 5.3211 -4.3769 1.7219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003464580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:42 Heat of formation + Delta-G solvation = -168.665317 kcal Electronic energy + Delta-G solvation = -28262.124843 eV Core-core repulsion = 23768.799527 eV Total energy + Delta-G solvation = -4493.325316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.33685 -48.34555 -43.55919 -41.05232 -39.56721 -38.73837 -37.09585 -36.36951 -34.27360 -32.43484 -31.99504 -30.19478 -27.76258 -27.13492 -25.27685 -24.21161 -23.85765 -22.72002 -21.36153 -20.25220 -20.08659 -19.16806 -18.90558 -18.78682 -18.16498 -17.48454 -17.15039 -16.48569 -16.39926 -16.32403 -15.79620 -15.68021 -15.65101 -15.24026 -15.05061 -14.96287 -14.81777 -14.67158 -14.46558 -14.44022 -13.97829 -13.83794 -13.41284 -13.22225 -12.99219 -12.91495 -12.56097 -12.40787 -12.09341 -11.97194 -11.39823 -11.30632 -10.94081 -10.54207 -10.37011 -10.12907 -9.49721 -9.22769 -6.55322 0.06109 0.21557 0.69521 1.28432 1.38791 1.56175 1.56645 1.71554 2.18148 2.30092 2.42946 2.55518 2.65116 2.77508 3.12001 3.35007 3.47464 3.66313 3.74700 3.78581 3.87829 4.21795 4.28932 4.45874 4.47971 4.65618 4.74830 4.93120 4.99025 5.08168 5.15230 5.34561 5.41857 5.42469 5.72545 5.82564 5.94083 5.98580 6.52997 6.77438 6.95909 7.53684 8.16388 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.022270 B = 0.003764 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.999331 B = 7436.397886 C = 7766.428900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.176 3.824 3 C -0.120 4.120 4 C -0.089 4.089 5 C -0.197 4.197 6 C 0.103 3.897 7 O -0.320 6.320 8 C 0.402 3.598 9 F -0.210 7.210 10 F -0.215 7.215 11 C -0.128 4.128 12 C -0.056 4.056 13 N -0.702 5.702 14 C 0.676 3.324 15 O -0.577 6.577 16 N -0.433 5.433 17 C -0.466 4.466 18 H 0.065 0.935 19 C 0.031 3.969 20 N -0.858 5.858 21 Si 1.100 2.900 22 H -0.275 1.275 23 H -0.281 1.281 24 H -0.270 1.270 25 C 0.480 3.520 26 O -0.521 6.521 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.241 0.759 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.449 0.551 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 23.930 -7.412 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.086 3.914 3 C -0.121 4.121 4 C -0.107 4.107 5 C -0.216 4.216 6 C 0.059 3.941 7 O -0.237 6.237 8 C 0.313 3.687 9 F -0.192 7.192 10 F -0.197 7.197 11 C -0.147 4.147 12 C -0.074 4.074 13 N -0.369 5.369 14 C 0.379 3.621 15 O -0.456 6.456 16 N -0.166 5.166 17 C -0.590 4.590 18 H 0.083 0.917 19 C -0.179 4.179 20 N -0.487 5.487 21 Si 0.923 3.077 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.196 1.196 25 C 0.270 3.730 26 O -0.398 6.398 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.256 0.744 33 H 0.188 0.812 34 H 0.184 0.816 35 H 0.297 0.703 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.867 22.256 -7.882 24.887 hybrid contribution 1.263 0.910 1.662 2.277 sum -6.604 23.166 -6.220 24.879 Atomic orbital electron populations 1.22026 0.87069 1.04199 1.06008 1.20113 0.98409 0.89360 0.83551 1.19443 1.04477 0.93301 0.94910 1.21172 0.96177 0.94522 0.98868 1.21504 1.05760 0.96535 0.97791 1.19101 0.96262 0.83787 0.94932 1.86607 1.79074 1.26688 1.31376 1.24393 0.74260 0.95825 0.74173 1.93081 1.52078 1.97051 1.76982 1.93091 1.64400 1.79817 1.82411 1.20732 1.02300 0.94886 0.96742 1.20994 0.95748 0.93177 0.97483 1.45407 1.54566 1.27726 1.09183 1.16251 0.80303 0.82885 0.82618 1.90751 1.50222 1.42860 1.61731 1.42211 1.42558 1.25641 1.06165 1.19973 1.40784 0.90917 1.07342 0.91685 1.27428 1.00975 0.92968 0.96556 1.70873 1.03466 1.41103 1.33231 0.83255 0.73400 0.75954 0.75123 1.20212 1.20597 1.19566 1.21403 0.78194 0.83152 0.90261 1.90544 1.59633 1.71227 1.18347 0.89782 0.86483 0.91478 0.85962 0.85060 0.74382 0.81243 0.81619 0.70293 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.97 71.98 0.65 -2.57 16 2 C 0.18 5.64 1.16 2.24 0.00 5.64 16 3 C -0.12 -3.41 4.89 -19.85 -0.10 -3.51 16 4 C -0.09 -2.84 9.17 22.26 0.20 -2.64 16 5 C -0.20 -5.50 8.26 22.37 0.18 -5.32 16 6 C 0.10 2.38 6.48 22.51 0.15 2.52 16 7 O -0.32 -5.81 10.43 -92.39 -0.96 -6.77 16 8 C 0.40 5.52 5.98 113.37 0.68 6.20 16 9 F -0.21 -3.79 15.58 44.97 0.70 -3.09 16 10 F -0.22 -4.37 15.58 44.97 0.70 -3.67 16 11 C -0.13 -2.48 9.99 22.36 0.22 -2.26 16 12 C -0.06 -1.16 9.34 22.25 0.21 -0.95 16 13 N -0.70 -22.68 5.36 -443.26 -2.38 -25.05 16 14 C 0.68 31.55 6.50 179.44 1.17 32.71 16 15 O -0.58 -30.49 13.94 -3.80 -0.05 -30.54 16 16 N -0.43 -22.48 2.36 -598.61 -1.42 -23.90 16 17 C -0.47 -28.08 9.74 83.96 0.82 -27.26 16 18 H 0.07 4.26 8.06 -2.91 -0.02 4.24 16 19 C 0.03 1.87 4.78 84.92 0.41 2.28 16 20 N -0.86 -52.97 13.69 21.65 0.30 -52.67 16 21 Si 1.10 54.95 26.41 68.60 1.81 56.76 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.27 -12.66 5.49 99.48 0.55 -12.12 16 25 C 0.48 21.80 6.41 87.94 0.56 22.37 16 26 O -0.52 -25.79 15.67 -2.90 -0.05 -25.84 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.12 4.57 5.62 -2.91 -0.02 4.55 16 31 H 0.13 3.61 5.10 -2.91 -0.01 3.59 16 32 H 0.24 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.17 2.24 7.10 -2.91 -0.02 2.22 16 35 H 0.45 10.20 8.18 -92.71 -0.76 9.44 16 36 H 0.27 16.69 8.73 -92.71 -0.81 15.88 16 Total: -1.00 -81.19 313.81 4.02 -77.17 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.22 Total: 10.39 kcal Atomic # 6 Polarization: 22.06 SS G_CDS: 5.15 Total: 27.21 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -3.50 Total: -101.62 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: -1.06 Total: -63.15 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 1.40 Total: -6.76 kcal Atomic # 14 Polarization: 54.95 SS G_CDS: 1.81 Total: 56.76 kcal Total: -81.19 4.02 -77.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003464580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.494 kcal (2) G-P(sol) polarization free energy of solvation -81.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds