Wall clock time and date at job start Tue Mar 31 2020 05:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 110.53334 * 2 1 4 4 C 1.38262 * 119.94187 * 269.02963 * 3 2 1 5 5 C 1.38149 * 120.05114 * 179.72448 * 4 3 2 6 6 C 1.38738 * 119.94310 * 0.56829 * 5 4 3 7 7 O 1.35902 * 120.05392 * 179.68084 * 6 5 4 8 8 C 1.42896 * 117.00297 * 0.02562 * 7 6 5 9 9 F 1.39901 * 109.47260 * 300.00231 * 8 7 6 10 10 F 1.39908 * 109.46963 * 59.99855 * 8 7 6 11 11 C 1.38728 * 119.88585 * 359.70564 * 6 5 4 12 12 C 1.38140 * 119.94780 * 359.97438 * 11 6 5 13 13 N 1.47309 * 110.60076 * 122.83128 * 2 1 3 14 14 C 1.34532 * 106.61803 * 118.52778 * 13 2 1 15 15 O 1.21525 * 123.77134 * 179.97438 * 14 13 2 16 16 N 1.33796 * 112.45654 * 359.97438 * 14 13 2 17 17 C 1.37504 * 124.17448 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00489 * 32.84630 * 17 16 14 19 19 C 1.38899 * 119.99969 * 212.84545 * 17 16 14 20 20 N 1.31376 * 120.00224 * 19.92789 * 19 17 16 21 21 Si 1.86804 * 119.99877 * 199.92883 * 19 17 16 22 22 H 1.48507 * 109.46776 * 90.00177 * 21 19 17 23 23 H 1.48496 * 109.46938 * 209.99619 * 21 19 17 24 24 H 1.48502 * 109.47256 * 329.99996 * 21 19 17 25 25 C 1.34768 * 111.64703 * 0.02562 * 16 14 13 26 26 O 1.21232 * 127.15910 * 180.02562 * 25 16 14 27 27 H 1.09005 * 109.47223 * 297.86835 * 1 2 3 28 28 H 1.09000 * 109.47684 * 57.87229 * 1 2 3 29 29 H 1.09000 * 109.47019 * 177.86823 * 1 2 3 30 30 H 1.07997 * 119.97743 * 359.97438 * 4 3 2 31 31 H 1.08001 * 120.03161 * 180.24552 * 5 4 3 32 32 H 1.08996 * 109.47041 * 179.97438 * 8 7 6 33 33 H 1.08000 * 120.02666 * 179.97438 * 11 6 5 34 34 H 1.08003 * 119.97382 * 179.97438 * 12 11 6 35 35 H 0.96994 * 126.68925 * 298.48898 * 13 2 1 36 36 H 0.97001 * 120.00632 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.3196 2.0505 -1.1979 5 6 2.7988 3.3462 -1.2007 6 6 3.0293 4.0018 0.0001 7 8 3.5068 5.2742 0.0001 8 6 3.7488 5.8763 -1.2730 9 9 4.6939 5.1201 -1.9745 10 9 2.5552 5.9228 -2.0013 11 6 2.7719 3.3562 1.2007 12 6 2.2865 2.0629 1.1980 13 7 2.0483 -0.7476 1.1586 14 6 2.7600 -1.7771 0.6652 15 8 3.3291 -2.5981 1.3572 16 7 2.7711 -1.7961 -0.6726 17 6 3.4243 -2.7426 -1.4263 18 1 3.5092 -3.7566 -1.0644 19 6 3.9751 -2.3947 -2.6530 20 7 4.2274 -1.1346 -2.9261 21 14 4.3570 -3.7184 -3.9145 22 1 3.1729 -3.9281 -4.7859 23 1 5.5128 -3.2928 -4.7441 24 1 4.6889 -4.9864 -3.2165 25 6 2.0629 -0.7729 -1.1902 26 8 1.8879 -0.5230 -2.3635 27 1 -0.3634 0.4804 0.9085 28 1 -0.3634 0.5465 -0.8703 29 1 -0.3633 -1.0270 -0.0382 30 1 2.1450 1.5379 -2.1323 31 1 2.9989 3.8465 -2.1366 32 1 4.1265 6.8887 -1.1301 33 1 2.9508 3.8643 2.1368 34 1 2.0863 1.5597 2.1325 35 1 1.9049 -0.5381 2.0948 36 1 4.6116 -0.8915 -3.7829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003464583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:44 Heat of formation + Delta-G solvation = -144.917844 kcal Electronic energy + Delta-G solvation = -28470.191177 eV Core-core repulsion = 23977.895629 eV Total energy + Delta-G solvation = -4492.295548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.091 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.43860 -47.43194 -41.48487 -39.78725 -37.72769 -36.97981 -35.16663 -34.22007 -31.84420 -31.01234 -30.46417 -28.91577 -26.24966 -25.80023 -23.81680 -22.88819 -22.11715 -20.81412 -19.97703 -19.00908 -18.28300 -18.00144 -17.44526 -16.66712 -16.22993 -15.98538 -15.26677 -14.94052 -14.83218 -14.64844 -14.22740 -14.15588 -14.02460 -13.79480 -13.74663 -13.69955 -13.43085 -13.18488 -12.95928 -12.69075 -12.43904 -12.09092 -12.00776 -11.68697 -11.59445 -11.24004 -11.04857 -10.83224 -10.80460 -10.38778 -9.65667 -9.29475 -8.85630 -8.79564 -8.77282 -8.17942 -7.94237 -6.42557 -4.18958 1.38365 1.53207 2.47173 2.92479 3.22233 3.26126 3.30440 3.35905 3.51928 3.81394 4.15294 4.16174 4.37828 4.48007 4.51745 4.78680 4.94169 4.96373 5.11319 5.22861 5.32610 5.43705 5.56447 5.73535 5.83290 5.90743 6.17605 6.20991 6.30900 6.49625 6.61333 6.66377 6.80932 7.18446 7.43953 7.59339 7.94688 8.18333 8.71387 9.00792 9.18387 9.77172 10.66657 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.004653 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.616512 B = 6016.449148 C = 7182.606702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 C -0.099 4.099 4 C -0.054 4.054 5 C -0.186 4.186 6 C 0.099 3.901 7 O -0.324 6.324 8 C 0.411 3.589 9 F -0.196 7.196 10 F -0.200 7.200 11 C -0.140 4.140 12 C -0.071 4.071 13 N -0.738 5.738 14 C 0.679 3.321 15 O -0.569 6.569 16 N -0.404 5.404 17 C -0.353 4.353 18 H 0.104 0.896 19 C 0.058 3.942 20 N -0.823 5.823 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.268 1.268 25 C 0.502 3.498 26 O -0.459 6.459 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.154 0.846 31 H 0.132 0.868 32 H 0.179 0.821 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.421 0.579 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 14.920 4.767 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.067 3.933 3 C -0.100 4.100 4 C -0.072 4.072 5 C -0.204 4.204 6 C 0.056 3.944 7 O -0.242 6.242 8 C 0.321 3.679 9 F -0.178 7.178 10 F -0.182 7.182 11 C -0.159 4.159 12 C -0.089 4.089 13 N -0.402 5.402 14 C 0.383 3.617 15 O -0.446 6.446 16 N -0.135 5.135 17 C -0.479 4.479 18 H 0.121 0.879 19 C -0.153 4.153 20 N -0.456 5.456 21 Si 0.756 3.244 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.192 1.192 25 C 0.288 3.712 26 O -0.330 6.330 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.172 0.828 31 H 0.150 0.850 32 H 0.195 0.805 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.263 0.737 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.634 14.749 4.368 16.065 hybrid contribution 0.336 -0.325 -0.453 0.651 sum -4.299 14.424 3.915 15.552 Atomic orbital electron populations 1.21885 0.91039 1.03230 1.03152 1.20178 0.95748 0.89779 0.87576 1.19571 1.02311 0.94387 0.93758 1.21369 0.93267 0.92931 0.99615 1.21491 1.05267 0.97108 0.96560 1.18880 0.97524 0.82820 0.95170 1.86559 1.80167 1.27871 1.29603 1.23296 0.75045 0.94070 0.75505 1.93132 1.65181 1.79497 1.79981 1.93100 1.49220 1.96996 1.78834 1.20236 1.04842 0.95141 0.95654 1.20630 0.97554 0.93123 0.97582 1.45627 1.57281 1.29700 1.07623 1.16410 0.79630 0.81939 0.83716 1.90818 1.49532 1.42414 1.61874 1.41786 1.41518 1.25922 1.04279 1.19372 1.37332 0.90434 1.00732 0.87850 1.25321 0.94272 0.96950 0.98784 1.69917 1.35444 1.17063 1.23151 0.85893 0.77956 0.80513 0.80035 1.19938 1.20828 1.19210 1.19872 0.80007 0.82903 0.88404 1.90550 1.56922 1.69220 1.16303 0.91415 0.90416 0.91354 0.82816 0.85004 0.80515 0.85029 0.85359 0.73704 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.96 37.16 0.33 -1.64 16 2 C 0.16 2.94 1.16 -133.24 -0.15 2.78 16 3 C -0.10 -1.73 4.89 -104.60 -0.51 -2.24 16 4 C -0.05 -1.00 9.18 -39.61 -0.36 -1.37 16 5 C -0.19 -3.11 8.26 -39.43 -0.33 -3.43 16 6 C 0.10 1.48 6.48 -39.22 -0.25 1.23 16 7 O -0.32 -4.05 10.43 -19.43 -0.20 -4.25 16 8 C 0.41 4.07 5.98 101.05 0.60 4.68 16 9 F -0.20 -2.51 15.58 2.25 0.04 -2.48 16 10 F -0.20 -2.30 15.58 2.25 0.04 -2.26 16 11 C -0.14 -1.94 9.99 -39.44 -0.39 -2.34 16 12 C -0.07 -1.03 9.34 -39.61 -0.37 -1.40 16 13 N -0.74 -13.56 5.33 -54.02 -0.29 -13.85 16 14 C 0.68 16.50 8.57 -88.01 -0.75 15.74 16 15 O -0.57 -15.31 17.62 5.34 0.09 -15.22 16 16 N -0.40 -10.65 2.69 -65.56 -0.18 -10.82 16 17 C -0.35 -9.98 9.46 -14.76 -0.14 -10.12 16 18 H 0.10 2.91 7.91 -52.49 -0.41 2.50 16 19 C 0.06 1.60 4.82 -17.50 -0.08 1.52 16 20 N -0.82 -23.35 11.19 55.49 0.62 -22.73 16 21 Si 0.93 21.18 29.60 -169.99 -5.03 16.15 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 C 0.50 12.12 5.75 -10.55 -0.06 12.06 16 26 O -0.46 -12.00 13.30 5.60 0.07 -11.92 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.15 3.24 5.69 -52.49 -0.30 2.94 16 31 H 0.13 2.13 5.10 -52.49 -0.27 1.86 16 32 H 0.18 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.13 1.51 7.01 -52.48 -0.37 1.14 16 35 H 0.42 6.09 8.12 -40.82 -0.33 5.76 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -34.69 318.25 -5.45 -40.14 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -2.93 Total: 6.97 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: -2.48 Total: 15.48 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.16 Total: -47.40 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.03 Total: -31.39 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.69 -5.45 -40.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003464583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.778 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds