Wall clock time and date at job start Tue Mar 31 2020 05:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.32964 * 120.82158 * 359.97438 * 12 11 10 14 14 C 1.32089 * 121.18069 * 180.02562 * 13 12 11 15 15 N 1.31540 * 122.65049 * 0.02562 * 14 13 12 16 16 C 1.33162 * 120.70538 * 359.97438 * 15 14 13 17 17 C 1.40867 * 118.84610 * 359.72979 * 16 15 14 18 18 C 1.41162 * 107.04576 * 179.80823 * 17 16 15 19 19 N 1.30318 * 108.52042 * 0.40214 * 18 17 16 20 20 N 1.36599 * 134.62663 * 179.97438 * 16 15 14 21 21 C 1.40054 * 125.89603 * 0.02681 * 20 16 15 22 22 C 1.38872 * 120.07014 * 324.72354 * 21 20 16 23 23 C 1.38105 * 119.93095 * 179.72891 * 22 21 20 24 24 C 1.38291 * 120.07015 * 0.56538 * 23 22 21 25 25 C 1.38292 * 120.13761 * 359.70478 * 24 23 22 26 26 C 1.38107 * 120.06955 * 0.02562 * 25 24 23 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 29 29 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 32 32 H 1.07999 * 118.67339 * 179.97438 * 14 13 12 33 33 H 1.08001 * 125.73743 * 180.13787 * 18 17 16 34 34 H 1.08003 * 120.03101 * 0.02562 * 22 21 20 35 35 H 1.07998 * 119.97287 * 180.29747 * 23 22 21 36 36 H 1.07995 * 119.93447 * 179.72960 * 24 23 22 37 37 H 1.08003 * 119.96356 * 180.02562 * 25 24 23 38 38 H 1.08001 * 120.03405 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 16 1.3404 -5.2296 0.0021 12 6 2.6901 -6.3621 0.0025 13 7 3.9460 -5.9253 0.0017 14 6 4.9632 -6.7679 0.0015 15 7 4.8031 -8.0736 0.0015 16 6 3.5839 -8.6092 0.0022 17 6 2.4654 -7.7529 0.0088 18 6 1.3165 -8.5729 0.0036 19 7 1.6974 -9.8192 0.0032 20 7 3.0964 -9.8852 0.0019 21 6 3.8632 -11.0572 0.0012 22 6 5.0649 -11.1021 -0.6933 23 6 5.8214 -12.2575 -0.6874 24 6 5.3778 -13.3728 -0.0005 25 6 4.1788 -13.3330 0.6875 26 6 3.4204 -12.1789 0.6900 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6247 -2.5564 0.8919 30 1 2.8714 -3.6047 -0.8890 31 1 2.8726 -3.6039 0.8910 32 1 5.9667 -6.3688 0.0005 33 1 0.2937 -8.2258 0.0044 34 1 5.4098 -10.2328 -1.2335 35 1 6.7584 -12.2916 -1.2234 36 1 5.9690 -14.2765 -0.0010 37 1 3.8352 -14.2055 1.2233 38 1 2.4843 -12.1483 1.2279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004601728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:39 Heat of formation + Delta-G solvation = 138.797269 kcal Electronic energy + Delta-G solvation = -22983.367464 eV Core-core repulsion = 19532.649878 eV Total energy + Delta-G solvation = -3450.717586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.30410 -39.69212 -38.69891 -34.45373 -33.81238 -33.02816 -31.41460 -30.99007 -30.75679 -29.37079 -25.63448 -24.93264 -24.37661 -23.43125 -22.51696 -21.54896 -20.81596 -18.96470 -18.06671 -17.21056 -16.74460 -16.60032 -16.25863 -15.71036 -15.11779 -14.95070 -14.56139 -14.45325 -14.29683 -14.03070 -13.78138 -13.60557 -13.40032 -12.95069 -12.16665 -12.08272 -11.84365 -11.76267 -11.74134 -11.49439 -11.04978 -10.98768 -10.70256 -10.36308 -10.27392 -10.06341 -9.73739 -9.59950 -9.37669 -9.33165 -9.17294 -8.48605 -8.46346 -7.58578 -6.11855 -4.16283 0.21667 0.69460 0.99766 1.30350 1.52338 1.76775 2.18841 2.62260 3.28716 3.33283 3.34112 3.35999 3.62088 3.86353 3.97507 4.36755 4.38339 4.50727 4.55163 4.58757 4.71700 4.80360 5.01119 5.09507 5.15681 5.24303 5.30447 5.61855 5.78683 5.94166 5.95242 6.00666 6.10329 6.14567 6.14994 6.31853 6.58735 6.63087 6.93187 7.13962 7.43321 7.49447 7.83315 7.97940 8.19749 8.87994 9.48161 10.98931 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.035653 B = 0.002259 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.149318 B =12394.310150 C =13075.536171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.080 4.080 11 S -0.032 6.032 12 C 0.250 3.750 13 N -0.548 5.548 14 C 0.364 3.636 15 N -0.551 5.551 16 C 0.357 3.643 17 C -0.271 4.271 18 C 0.122 3.878 19 N -0.246 5.246 20 N -0.337 5.337 21 C 0.161 3.839 22 C -0.113 4.113 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.104 4.104 26 C -0.114 4.114 27 H 0.264 0.736 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.206 0.794 33 H 0.208 0.792 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.284 -24.663 -0.040 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.228 4.228 11 S 0.211 5.789 12 C -0.014 4.014 13 N -0.270 5.270 14 C 0.069 3.931 15 N -0.276 5.276 16 C 0.111 3.889 17 C -0.290 4.290 18 C -0.075 4.075 19 N -0.058 5.058 20 N -0.119 5.119 21 C 0.070 3.930 22 C -0.134 4.134 23 C -0.119 4.119 24 C -0.143 4.143 25 C -0.123 4.123 26 C -0.134 4.134 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.222 0.778 33 H 0.224 0.776 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.440 -25.680 -0.038 26.736 hybrid contribution 1.281 1.656 0.019 2.093 sum 8.721 -24.024 -0.020 25.558 Atomic orbital electron populations 1.69944 1.06077 1.27122 1.49844 1.25011 0.94924 0.99375 0.94942 0.86552 0.79503 0.82588 0.78766 1.20090 1.21202 1.20087 1.21004 0.93140 0.89863 1.51957 0.92162 1.19016 0.93409 0.89659 0.98557 1.24039 1.01804 0.91016 1.05912 1.86017 1.06610 1.01025 1.85242 1.23720 0.96957 0.92938 0.87810 1.68994 0.98091 1.38530 1.21426 1.24970 0.98748 0.82994 0.86347 1.67599 1.21747 1.15088 1.23133 1.18955 0.90604 0.85741 0.93596 1.19670 0.95375 0.94613 1.19361 1.23988 0.99751 0.88438 0.95361 1.77144 0.87221 1.20337 1.21051 1.45467 1.03268 1.01504 1.61707 1.17453 0.91819 0.84406 0.99315 1.21096 0.93980 0.99524 0.98808 1.21012 0.99575 0.92123 0.99159 1.21257 0.96558 0.98683 0.97820 1.21036 0.94627 0.97370 0.99241 1.20992 1.01117 0.92173 0.99137 0.92658 0.95439 0.95438 0.89431 0.89435 0.77750 0.77571 0.84735 0.85038 0.85447 0.85113 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.96 9.11 -34.44 -0.31 -14.28 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.80 4.98 -27.88 -0.14 0.66 16 10 C -0.08 -1.57 4.83 37.16 0.18 -1.39 16 11 S -0.03 -0.54 22.03 -107.50 -2.37 -2.90 16 12 C 0.25 3.99 7.06 -16.06 -0.11 3.87 16 13 N -0.55 -8.64 9.32 -13.06 -0.12 -8.76 16 14 C 0.36 4.87 12.24 -92.12 -1.13 3.74 16 15 N -0.55 -7.90 9.65 -13.91 -0.13 -8.03 16 16 C 0.36 5.41 7.53 -156.00 -1.17 4.23 16 17 C -0.27 -4.05 6.08 -106.79 -0.65 -4.70 16 18 C 0.12 1.56 11.93 -17.08 -0.20 1.35 16 19 N -0.25 -3.35 12.21 30.81 0.38 -2.98 16 20 N -0.34 -4.78 3.76 -9.92 -0.04 -4.82 16 21 C 0.16 2.00 6.40 -83.63 -0.54 1.47 16 22 C -0.11 -1.25 9.40 -39.40 -0.37 -1.62 16 23 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 24 C -0.12 -0.91 10.04 -39.54 -0.40 -1.31 16 25 C -0.10 -0.83 10.04 -39.61 -0.40 -1.22 16 26 C -0.11 -1.19 9.76 -39.39 -0.38 -1.57 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 31 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.21 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.21 1.94 8.06 -52.49 -0.42 1.51 16 34 H 0.13 1.56 7.24 -52.48 -0.38 1.18 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -31.12 350.18 -11.56 -42.68 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.15 Total: -0.93 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -6.12 Total: -10.45 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.82 Total: -49.57 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -2.37 Total: -2.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.12 -11.56 -42.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004601728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.479 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds