Wall clock time and date at job start Tue Mar 31 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37974 * 119.92448 * 2 1 4 4 C 1.39590 * 119.84507 * 180.25071 * 3 2 1 5 5 C 1.47785 * 120.14134 * 179.76733 * 4 3 2 6 6 O 1.21529 * 120.00549 * 359.72276 * 5 4 3 7 7 N 1.34777 * 119.99737 * 179.72349 * 5 4 3 8 8 C 1.38193 * 120.00200 * 174.74145 * 7 5 4 9 9 C 1.40001 * 119.80364 * 36.69642 * 8 7 5 10 10 C 1.35921 * 120.21027 * 179.70365 * 9 8 7 11 11 C 1.41657 * 119.78695 * 0.26979 * 10 9 8 12 12 C 1.39670 * 120.19170 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99798 * 28.27161 * 12 11 10 14 14 C 1.46580 * 119.99664 * 208.27639 * 12 11 10 15 15 N 1.29492 * 120.00515 * 11.70766 * 14 12 11 16 16 Si 1.86802 * 119.99485 * 191.70720 * 14 12 11 17 17 H 1.48504 * 109.47102 * 90.00097 * 16 14 12 18 18 H 1.48499 * 109.46996 * 209.99639 * 16 14 12 19 19 H 1.48496 * 109.47414 * 330.00087 * 16 14 12 20 20 C 1.41653 * 119.61502 * 0.02562 * 11 10 9 21 21 C 1.35920 * 119.79157 * 359.97438 * 20 11 10 22 22 C 1.39627 * 119.70845 * 359.49305 * 4 3 2 23 23 C 1.37923 * 119.84878 * 0.25249 * 22 4 3 24 24 C 1.38345 * 119.92635 * 179.74394 * 2 1 3 25 25 N 1.48019 * 119.85101 * 0.02562 * 24 2 1 26 26 O 1.31701 * 119.99825 * 173.11741 * 25 24 2 27 27 O 1.31703 * 119.99822 * 353.12455 * 25 24 2 28 28 H 1.09002 * 109.47030 * 263.09517 * 1 2 3 29 29 H 1.08998 * 109.46763 * 23.10053 * 1 2 3 30 30 H 1.09006 * 109.46835 * 143.09715 * 1 2 3 31 31 H 1.08002 * 120.07574 * 359.97438 * 3 2 1 32 32 H 0.97003 * 119.99864 * 354.74167 * 7 5 4 33 33 H 1.08007 * 119.89626 * 359.97438 * 9 8 7 34 34 H 1.07998 * 120.10869 * 180.30050 * 10 9 8 35 35 H 0.96996 * 120.00400 * 180.02562 * 15 14 12 36 36 H 1.07999 * 120.10633 * 180.02562 * 20 11 10 37 37 H 1.08001 * 119.89710 * 180.02562 * 21 20 11 38 38 H 1.07999 * 120.07586 * 180.27684 * 22 4 3 39 39 H 1.08007 * 119.92864 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5912 1.1939 -0.0053 5 6 4.3351 2.4709 -0.0105 6 8 3.7316 3.5257 -0.0153 7 7 5.6828 2.4656 -0.0100 8 6 6.3785 3.6542 -0.1245 9 6 5.8871 4.8104 0.4933 10 6 6.5678 5.9824 0.3911 11 6 7.7750 6.0329 -0.3484 12 6 8.4815 7.2327 -0.4585 13 1 8.4134 7.9734 0.3245 14 6 9.3155 7.4865 -1.6370 15 7 9.2252 6.7144 -2.6726 16 14 10.5084 8.9240 -1.6448 17 1 11.8235 8.4787 -1.1179 18 1 10.6746 9.4218 -3.0339 19 1 9.9756 10.0141 -0.7887 20 6 8.2614 4.8596 -0.9754 21 6 7.5675 3.6963 -0.8625 22 6 4.2816 -0.0198 0.0002 23 6 3.5811 -1.2079 0.0055 24 6 2.1972 -1.1990 0.0054 25 7 1.4522 -2.4780 0.0105 26 8 2.0992 -3.6175 -0.1211 27 8 0.1422 -2.4764 0.1465 28 1 -0.3633 -0.1235 1.0202 29 1 -0.3633 0.9453 -0.4032 30 1 -0.3633 -0.8218 -0.6171 31 1 1.6553 2.1311 -0.0004 32 1 6.1645 1.6276 0.0708 33 1 4.9665 4.7699 1.0567 34 1 6.1898 6.8723 0.8724 35 1 9.7773 6.8822 -3.4522 36 1 9.1811 4.8890 -1.5408 37 1 7.9370 2.8006 -1.3395 38 1 5.3615 -0.0282 0.0006 39 1 4.1138 -2.1475 0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004851269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:54 Heat of formation + Delta-G solvation = 43.214056 kcal Electronic energy + Delta-G solvation = -25482.362938 eV Core-core repulsion = 21552.454931 eV Total energy + Delta-G solvation = -3929.908007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.110 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.03131 -39.73260 -38.33292 -37.15926 -35.01347 -34.68689 -33.61638 -32.95847 -32.17746 -29.71071 -29.23369 -28.27097 -26.79259 -24.86910 -23.34476 -22.78662 -21.65517 -20.87582 -19.92843 -18.76909 -18.34671 -17.88768 -17.58715 -16.63748 -16.38720 -15.65813 -15.33718 -15.25453 -14.96721 -14.65710 -14.10866 -14.03836 -13.94647 -13.27187 -13.22971 -13.07336 -12.78411 -12.60624 -12.23145 -11.93661 -11.90691 -11.51262 -11.47780 -11.30496 -11.20105 -11.06806 -10.89015 -10.73568 -10.27903 -9.90393 -9.68510 -9.64429 -9.57459 -9.36362 -9.09837 -7.67843 -7.20259 -6.98426 -4.40228 -1.08206 0.46891 0.56263 0.82002 2.29661 2.64128 2.91635 2.94287 3.00216 3.07366 3.26058 3.49368 3.71480 3.86987 3.90244 4.30370 4.37798 4.40154 4.55782 4.63503 4.98626 5.14675 5.23241 5.29332 5.40741 5.50676 5.54207 5.64498 5.75852 6.01986 6.08765 6.33116 6.49946 6.62217 6.70571 6.80377 7.01960 7.17664 7.48499 7.54275 7.75943 7.91656 8.03808 8.11242 8.39095 8.51647 8.64995 8.90583 9.83457 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.036800 B = 0.002115 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.688093 B =13235.243728 C =13675.041059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.014 4.014 3 C -0.073 4.073 4 C -0.052 4.052 5 C 0.525 3.475 6 O -0.517 6.517 7 N -0.623 5.623 8 C -0.046 4.046 9 C -0.061 4.061 10 C -0.231 4.231 11 C 0.111 3.889 12 C -0.457 4.457 13 H 0.083 0.917 14 C 0.072 3.928 15 N -0.759 5.759 16 Si 0.919 3.081 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.257 1.257 20 C -0.169 4.169 21 C -0.098 4.098 22 C -0.102 4.102 23 C -0.050 4.050 24 C -0.001 4.001 25 N -0.015 5.015 26 O -0.181 6.181 27 O -0.166 6.166 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.163 0.837 32 H 0.394 0.606 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.289 0.711 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.153 0.847 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 -11.546 2.794 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.015 4.015 3 C -0.093 4.093 4 C -0.055 4.055 5 C 0.311 3.689 6 O -0.394 6.394 7 N -0.264 5.264 8 C -0.139 4.139 9 C -0.080 4.080 10 C -0.251 4.251 11 C 0.108 3.892 12 C -0.484 4.484 13 H 0.102 0.898 14 C -0.153 4.153 15 N -0.381 5.381 16 Si 0.742 3.258 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.181 1.181 20 C -0.189 4.189 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.070 4.070 24 C -0.088 4.088 25 N 0.462 4.538 26 O -0.371 6.371 27 O -0.359 6.359 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.180 0.820 32 H 0.229 0.771 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.107 0.893 38 H 0.170 0.830 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.341 -10.302 2.512 12.897 hybrid contribution 0.648 -0.313 -0.227 0.754 sum -6.693 -10.615 2.285 12.755 Atomic orbital electron populations 1.21430 0.87878 1.04974 1.04826 1.19941 0.98533 0.89941 0.93118 1.21315 0.92775 0.97895 0.97270 1.20777 0.94622 0.94429 0.95719 1.18013 0.82916 0.87903 0.80048 1.90795 1.68090 1.31400 1.49130 1.42551 1.04966 1.09561 1.69370 1.17047 0.98714 0.85802 1.12299 1.20314 0.98191 0.92188 0.97337 1.20674 0.97464 0.96570 1.10404 1.17670 0.89519 0.92655 0.89337 1.20674 1.22383 1.02308 1.03015 0.89846 1.27509 0.95915 0.97461 0.94456 1.69111 1.30952 1.34764 1.03263 0.86134 0.80196 0.80750 0.78674 1.18893 1.20012 1.18084 1.20903 1.01165 0.91135 1.05702 1.20185 0.95413 0.97746 0.98474 1.21395 1.01175 0.90063 0.99544 1.21012 0.90665 1.00907 0.94383 1.20371 0.91748 0.81287 1.15430 1.50417 1.02958 1.04050 0.96419 1.96284 1.69139 1.16240 1.55455 1.96200 0.89873 1.95583 1.54253 0.88928 0.90328 0.88004 0.81974 0.77145 0.87831 0.88733 0.89869 0.86353 0.89334 0.82951 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.59 36.01 0.31 -0.79 16 2 C -0.01 -0.13 5.87 -104.68 -0.61 -0.75 16 3 C -0.07 -0.78 9.22 -39.17 -0.36 -1.14 16 4 C -0.05 -0.60 5.87 -104.97 -0.62 -1.21 16 5 C 0.52 8.35 7.59 -12.36 -0.09 8.26 16 6 O -0.52 -10.25 13.80 5.34 0.07 -10.17 16 7 N -0.62 -9.96 5.20 -10.60 -0.06 -10.01 16 8 C -0.05 -0.96 6.28 -83.67 -0.53 -1.49 16 9 C -0.06 -1.39 8.59 -39.75 -0.34 -1.73 16 10 C -0.23 -5.63 9.76 -39.11 -0.38 -6.02 16 11 C 0.11 2.83 5.59 -106.76 -0.60 2.23 16 12 C -0.46 -11.45 9.27 -35.69 -0.33 -11.78 16 13 H 0.08 2.01 7.96 -52.49 -0.42 1.59 16 14 C 0.07 1.67 5.39 -15.18 -0.08 1.59 16 15 N -0.76 -18.09 10.99 55.99 0.62 -17.48 16 16 Si 0.92 17.15 29.66 -169.99 -5.04 12.11 16 17 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 20 C -0.17 -4.12 8.67 -39.11 -0.34 -4.46 16 21 C -0.10 -2.11 9.90 -39.75 -0.39 -2.51 16 22 C -0.10 -0.90 9.54 -39.18 -0.37 -1.27 16 23 C -0.05 -0.45 9.56 -39.64 -0.38 -0.82 16 24 C 0.00 -0.01 6.86 -79.85 -0.55 -0.56 16 25 N -0.01 -0.18 4.98 34.01 0.17 -0.01 16 26 O -0.18 -2.41 19.16 -31.57 -0.60 -3.02 16 27 O -0.17 -2.10 15.93 -31.57 -0.50 -2.60 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 30 H 0.10 0.91 5.78 -51.93 -0.30 0.61 16 31 H 0.16 1.68 7.65 -52.49 -0.40 1.28 16 32 H 0.39 4.66 6.87 -40.82 -0.28 4.38 16 33 H 0.10 2.33 6.29 -52.48 -0.33 2.00 16 34 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.29 6.14 8.27 -40.82 -0.34 5.80 16 36 H 0.12 2.93 6.25 -52.49 -0.33 2.61 16 37 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.15 0.94 6.42 -52.49 -0.34 0.61 16 39 H 0.16 1.12 7.58 -52.48 -0.40 0.72 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -29.48 342.93 -9.46 -38.94 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -3.61 Total: 9.53 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -5.67 Total: -22.46 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.73 Total: -27.50 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.03 Total: -15.79 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.04 Total: 12.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.48 -9.46 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004851269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.155 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds