Wall clock time and date at job start Tue Mar 31 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30715 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48508 * 109.47150 * 274.98545 * 3 2 1 5 5 H 1.48499 * 109.47283 * 34.98458 * 3 2 1 6 6 H 1.48498 * 109.47173 * 154.98567 * 3 2 1 7 7 C 1.40031 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99484 * 186.29810 * 7 2 1 9 9 C 1.39600 * 120.00350 * 6.30468 * 7 2 1 10 10 O 1.22118 * 119.99765 * 353.60849 * 9 7 2 11 11 N 1.34772 * 119.99975 * 173.61559 * 9 7 2 12 12 N 1.39332 * 125.49086 * 359.96785 * 11 9 7 13 13 C 1.30569 * 113.76982 * 180.02562 * 12 11 9 14 14 C 1.40785 * 125.36136 * 180.02562 * 13 12 11 15 15 C 1.39396 * 126.16535 * 359.97438 * 14 13 12 16 16 C 1.39559 * 106.48473 * 179.97438 * 15 14 13 17 17 C 1.35978 * 107.29891 * 359.97438 * 16 15 14 18 18 O 1.34043 * 109.14155 * 359.77073 * 17 16 15 19 19 C 1.51198 * 109.28277 * 359.97438 * 13 12 11 20 20 C 1.47078 * 125.48836 * 180.02562 * 11 9 7 21 21 H 1.08997 * 110.55403 * 298.71075 * 20 11 9 22 22 C 1.50702 * 110.55197 * 61.38080 * 20 11 9 23 23 C 1.38167 * 120.02854 * 23.52183 * 22 20 11 24 24 C 1.38242 * 120.05805 * 180.02562 * 23 22 20 25 25 C 1.38286 * 120.11117 * 359.97438 * 24 23 22 26 26 C 1.38125 * 120.05644 * 359.77111 * 25 24 23 27 27 C 1.38710 * 120.02919 * 203.55002 * 22 20 11 28 28 O 1.35901 * 120.05640 * 359.97124 * 27 22 20 29 29 H 0.96997 * 119.99867 * 0.02562 * 1 2 3 30 30 H 1.08003 * 126.75365 * 359.97438 * 15 14 13 31 31 H 1.08005 * 126.35008 * 180.02562 * 16 15 14 32 32 H 1.07999 * 125.43358 * 180.02562 * 17 16 15 33 33 H 1.08996 * 110.51477 * 241.35555 * 19 13 12 34 34 H 1.09005 * 110.51111 * 118.64219 * 19 13 12 35 35 H 1.08008 * 119.97267 * 0.02562 * 23 22 20 36 36 H 1.07999 * 119.94578 * 180.02562 * 24 23 22 37 37 H 1.08002 * 119.97268 * 180.02562 * 25 24 23 38 38 H 1.07997 * 120.02918 * 180.27669 * 26 25 24 39 39 H 0.96702 * 113.99506 * 90.00556 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.3832 2.1073 -1.3948 5 1 1.4952 2.6200 0.8027 6 1 3.5874 1.4121 0.5920 7 6 2.0073 -1.2127 0.0005 8 1 3.0824 -1.2155 0.1032 9 6 1.3156 -2.4181 -0.1317 10 8 0.0944 -2.4247 -0.1304 11 7 1.9956 -3.5746 -0.2606 12 7 3.3832 -3.6996 -0.2771 13 6 3.7992 -4.9296 -0.4141 14 6 5.1471 -5.3334 -0.4609 15 6 6.2596 -4.4983 -0.3705 16 6 7.3820 -5.3226 -0.4628 17 6 6.9356 -6.5994 -0.6021 18 8 5.5952 -6.5997 -0.5949 19 6 2.6055 -5.8523 -0.5133 20 6 1.3924 -4.9079 -0.4076 21 1 0.7893 -5.1536 0.4665 22 6 0.5576 -4.9757 -1.6604 23 6 0.8092 -4.1090 -2.7066 24 6 0.0435 -4.1703 -3.8560 25 6 -0.9756 -5.0991 -3.9620 26 6 -1.2277 -5.9713 -2.9211 27 6 -0.4643 -5.9079 -1.7641 28 8 -0.7137 -6.7615 -0.7364 29 1 -0.4850 0.8400 -0.0004 30 1 6.2539 -3.4248 -0.2524 31 1 8.4138 -5.0052 -0.4289 32 1 7.5613 -7.4744 -0.6988 33 1 2.6064 -6.5678 0.3090 34 1 2.6022 -6.3708 -1.4721 35 1 1.6048 -3.3829 -2.6265 36 1 0.2419 -3.4922 -4.6728 37 1 -1.5721 -5.1453 -4.8611 38 1 -2.0207 -6.6994 -3.0061 39 1 -1.3526 -6.4259 -0.0927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017173203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:21 Heat of formation + Delta-G solvation = -0.200361 kcal Electronic energy + Delta-G solvation = -27386.748750 eV Core-core repulsion = 23454.958153 eV Total energy + Delta-G solvation = -3931.790597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.34643 -41.75329 -40.09144 -38.50798 -37.54874 -34.92577 -34.24533 -33.55252 -33.10662 -31.04065 -30.10854 -29.55114 -28.69922 -25.35099 -24.11649 -23.59287 -22.65283 -22.53307 -21.15694 -20.68843 -19.39884 -18.76344 -18.40440 -17.67477 -17.56854 -17.00284 -16.83556 -16.39948 -16.15299 -15.81665 -15.62207 -15.13095 -14.93859 -14.70951 -14.49091 -14.19002 -13.86869 -13.70872 -13.49693 -13.36139 -13.17313 -13.03775 -12.98342 -12.79996 -12.69540 -12.51841 -12.39811 -12.06381 -11.52780 -11.20352 -11.01836 -10.88369 -10.14992 -10.00336 -9.79503 -9.54333 -8.60440 -8.48546 -7.08016 -0.09498 0.24583 0.34928 1.31079 1.33588 1.46601 1.50145 1.59514 1.93986 2.16206 2.33097 2.44061 2.63494 3.19464 3.28226 3.42308 3.54009 3.78538 3.84851 3.99304 4.09219 4.10748 4.14193 4.25155 4.43346 4.49899 4.63853 4.71633 4.74131 4.88627 4.98086 5.01120 5.08113 5.18195 5.26520 5.34991 5.44713 5.54921 5.60762 5.86808 5.96544 6.05132 6.12870 6.45937 6.68029 6.72852 7.37589 8.25283 8.45708 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.007632 B = 0.006216 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.803867 B = 4503.355522 C = 7338.383438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.035 3.965 3 Si 0.996 3.004 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.253 1.253 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.565 3.435 10 O -0.605 6.605 11 N -0.473 5.473 12 N -0.217 5.217 13 C 0.104 3.896 14 C 0.007 3.993 15 C -0.156 4.156 16 C -0.221 4.221 17 C -0.008 4.008 18 O -0.168 6.168 19 C -0.093 4.093 20 C 0.149 3.851 21 H 0.075 0.925 22 C -0.115 4.115 23 C -0.099 4.099 24 C -0.138 4.138 25 C -0.101 4.101 26 C -0.145 4.145 27 C 0.103 3.897 28 O -0.499 6.499 29 H 0.282 0.718 30 H 0.147 0.853 31 H 0.182 0.818 32 H 0.257 0.743 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.678 -12.903 -4.964 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.184 4.184 3 Si 0.815 3.185 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.176 1.176 7 C -0.577 4.577 8 H 0.099 0.901 9 C 0.380 3.620 10 O -0.490 6.490 11 N -0.297 5.297 12 N -0.030 5.030 13 C -0.083 4.083 14 C -0.044 4.044 15 C -0.180 4.180 16 C -0.240 4.240 17 C -0.078 4.078 18 O -0.062 6.062 19 C -0.133 4.133 20 C 0.044 3.956 21 H 0.093 0.907 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.156 4.156 25 C -0.118 4.118 26 C -0.163 4.163 27 C 0.058 3.942 28 O -0.311 6.311 29 H 0.092 0.908 30 H 0.165 0.835 31 H 0.200 0.800 32 H 0.272 0.728 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.181 0.819 38 H 0.176 0.824 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 7.997 -12.268 -5.107 15.509 hybrid contribution -0.457 0.714 0.507 0.988 sum 7.540 -11.554 -4.600 14.543 Atomic orbital electron populations 1.70181 1.09414 1.29689 1.32447 1.27006 0.95517 1.04907 0.90976 0.85025 0.79012 0.74848 0.79645 1.18341 1.18619 1.17620 1.20120 0.96130 0.90991 1.50494 0.90119 1.16326 0.86120 0.81412 0.78178 1.90738 1.14112 1.84865 1.59274 1.50392 0.99264 1.06977 1.73107 1.75186 0.97157 1.19971 1.10714 1.20555 0.92232 0.91584 1.03946 1.17914 0.90555 0.82764 1.13205 1.22644 0.91475 1.00880 1.03038 1.22101 1.00703 0.92647 1.08502 1.25512 0.79140 1.01295 1.01894 1.84042 1.24208 1.27691 1.70239 1.21955 0.88460 0.97522 1.05357 1.20788 0.94875 0.84284 0.95603 0.90695 1.20268 0.98935 0.96777 0.95693 1.20799 0.99807 0.97070 0.94052 1.21359 0.96659 1.00077 0.97522 1.21366 0.96800 0.93990 0.99680 1.21644 1.00430 1.00970 0.93276 1.18295 0.94740 0.90898 0.90230 1.84699 1.66988 1.42617 1.36784 0.90788 0.83504 0.80047 0.72773 0.86751 0.88184 0.89509 0.84632 0.81915 0.82364 0.73906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.31 11.71 21.84 0.26 -47.05 16 2 C 0.04 1.98 5.49 85.29 0.47 2.45 16 3 Si 1.00 41.52 29.56 68.60 2.03 43.55 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.54 -32.45 8.93 23.03 0.21 -32.24 16 8 H 0.08 4.66 7.39 -2.91 -0.02 4.64 16 9 C 0.57 34.34 6.47 84.57 0.55 34.88 16 10 O -0.61 -40.31 14.57 -5.70 -0.08 -40.40 16 11 N -0.47 -24.47 2.77 -453.62 -1.25 -25.72 16 12 N -0.22 -10.15 11.11 -46.54 -0.52 -10.67 16 13 C 0.10 3.99 7.06 43.53 0.31 4.30 16 14 C 0.01 0.22 7.01 23.17 0.16 0.38 16 15 C -0.16 -4.50 10.83 22.87 0.25 -4.25 16 16 C -0.22 -4.35 10.86 22.06 0.24 -4.11 16 17 C -0.01 -0.14 12.08 67.29 0.81 0.68 16 18 O -0.17 -4.35 10.66 -6.91 -0.07 -4.42 16 19 C -0.09 -3.34 6.54 30.38 0.20 -3.14 16 20 C 0.15 6.52 3.11 44.51 0.14 6.65 16 21 H 0.08 3.33 7.71 -2.39 -0.02 3.31 16 22 C -0.11 -4.81 4.29 -19.77 -0.08 -4.90 16 23 C -0.10 -4.32 8.74 22.25 0.19 -4.13 16 24 C -0.14 -4.91 10.04 22.28 0.22 -4.68 16 25 C -0.10 -2.90 10.04 22.25 0.22 -2.68 16 26 C -0.15 -4.26 9.99 22.37 0.22 -4.04 16 27 C 0.10 3.63 6.68 22.51 0.15 3.78 16 28 O -0.50 -15.04 12.65 -92.44 -1.17 -16.21 16 29 H 0.28 15.08 8.29 -92.71 -0.77 14.31 16 30 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.26 1.45 8.06 -2.91 -0.02 1.42 16 33 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.10 3.37 7.72 -2.38 -0.02 3.35 16 35 H 0.09 4.38 6.96 -2.91 -0.02 4.36 16 36 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 38 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 39 H 0.40 9.57 9.06 -74.06 -0.67 8.90 16 Total: -1.00 -82.83 346.12 3.89 -78.95 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.44 Total: 33.02 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 4.26 Total: -11.05 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -1.52 Total: -83.44 kcal Atomic # 8 Polarization: -59.70 SS G_CDS: -1.33 Total: -61.03 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -82.83 3.89 -78.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017173203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.746 kcal (2) G-P(sol) polarization free energy of solvation -82.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds