Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37974 * 119.93069 * 2 1 4 4 C 1.39560 * 119.85468 * 180.27194 * 3 2 1 5 5 C 1.47847 * 120.14532 * 179.74607 * 4 3 2 6 6 O 1.21549 * 119.99766 * 179.72076 * 5 4 3 7 7 N 1.34779 * 119.99972 * 359.72330 * 5 4 3 8 8 C 1.46497 * 119.99943 * 180.02562 * 7 5 4 9 9 H 1.09007 * 109.47078 * 34.99474 * 8 7 5 10 10 C 1.53000 * 109.47021 * 275.00054 * 8 7 5 11 11 C 1.50694 * 109.47115 * 154.99835 * 8 7 5 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 7 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.39591 * 119.70642 * 359.46663 * 4 3 2 20 20 C 1.37941 * 119.85656 * 0.25493 * 19 4 3 21 21 S 1.76205 * 119.92680 * 179.97438 * 20 19 4 22 22 N 1.65598 * 107.21414 * 115.00330 * 21 20 19 23 23 O 1.42097 * 106.40194 * 228.54103 * 21 20 19 24 24 O 1.42100 * 106.39940 * 1.46343 * 21 20 19 25 25 C 1.38331 * 119.92418 * 179.73658 * 2 1 3 26 26 C 1.50701 * 119.85605 * 0.02686 * 25 2 1 27 27 H 1.08997 * 109.47158 * 270.26249 * 1 2 3 28 28 H 1.09009 * 109.46674 * 30.25767 * 1 2 3 29 29 H 1.08998 * 109.47095 * 150.25450 * 1 2 3 30 30 H 1.08000 * 120.07468 * 359.97438 * 3 2 1 31 31 H 0.96997 * 119.99849 * 359.97438 * 7 5 4 32 32 H 1.09002 * 109.47106 * 299.99878 * 10 8 7 33 33 H 1.08998 * 109.47089 * 59.99825 * 10 8 7 34 34 H 1.08995 * 109.47131 * 179.97438 * 10 8 7 35 35 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 36 36 H 1.08005 * 120.06983 * 180.23134 * 19 4 3 37 37 H 0.97000 * 120.00332 * 359.97438 * 22 21 20 38 38 H 0.97001 * 120.00057 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.47362 * 269.97318 * 26 25 2 40 40 H 1.08998 * 109.47302 * 29.97652 * 26 25 2 41 41 H 1.09001 * 109.47136 * 149.97369 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1957 0.0000 4 6 3.5911 1.1939 -0.0057 5 6 4.3352 2.4714 -0.0114 6 8 5.5507 2.4667 -0.0113 7 7 3.6658 3.6412 -0.0167 8 6 4.4032 4.9070 -0.0230 9 1 5.3134 4.7945 -0.6121 10 6 4.7690 5.2912 1.4121 11 6 3.5432 5.9864 -0.6282 12 1 2.5471 5.7528 -0.9742 13 6 4.0284 7.2720 -0.7414 14 7 5.2415 7.5565 -0.3207 15 14 2.9625 8.6097 -1.4924 16 1 3.1911 8.6599 -2.9588 17 1 1.5326 8.3123 -1.2242 18 1 3.3167 9.9206 -0.8911 19 6 4.2812 -0.0195 -0.0002 20 6 3.5809 -1.2078 0.0056 21 16 4.4502 -2.7405 0.0120 22 7 4.1114 -3.4902 1.4492 23 8 3.8625 -3.5394 -1.0056 24 8 5.8335 -2.4170 0.0445 25 6 2.1971 -1.1989 0.0055 26 6 1.4386 -2.5011 0.0109 27 1 -0.3633 0.0047 1.0276 28 1 -0.3633 0.8878 -0.5179 29 1 -0.3633 -0.8922 -0.5099 30 1 1.6556 2.1311 -0.0004 31 1 2.6958 3.6449 -0.0172 32 1 3.8589 5.4037 2.0014 33 1 5.3910 4.5105 1.8499 34 1 5.3180 6.2328 1.4075 35 1 5.5829 8.4609 -0.4007 36 1 5.3612 -0.0277 -0.0008 37 1 3.5253 -3.0625 2.0930 38 1 4.4996 -4.3567 1.6476 39 1 1.2557 -2.8108 1.0398 40 1 0.4867 -2.3693 -0.5035 41 1 2.0248 -3.2651 -0.4998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081305754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = -121.702607 kcal Electronic energy + Delta-G solvation = -25560.355202 eV Core-core repulsion = 21758.739823 eV Total energy + Delta-G solvation = -3801.615379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47369 -39.93967 -38.39245 -37.02302 -36.84695 -34.81630 -34.40078 -34.09920 -33.48999 -31.02441 -28.78627 -27.71203 -27.37436 -24.28654 -24.20017 -22.24175 -21.15809 -20.51476 -19.65960 -18.54033 -18.43069 -17.84645 -17.56666 -16.97344 -16.64558 -16.59011 -16.11200 -16.06705 -15.88288 -15.20860 -14.92586 -14.51156 -14.41750 -13.96148 -13.79851 -13.67643 -13.40842 -13.28598 -13.27707 -13.17083 -13.06459 -12.97261 -12.88585 -12.77717 -12.63417 -12.30977 -12.28616 -12.13813 -11.71346 -11.37061 -11.16959 -10.96824 -10.63505 -10.51288 -9.96507 -9.70916 -8.20315 -6.38784 -0.72969 -0.51155 -0.17640 1.44310 1.45303 1.55872 1.59683 2.08990 2.24634 2.40998 2.48366 2.66267 3.10486 3.36802 3.51131 3.66909 3.78892 3.84367 4.12776 4.20149 4.49760 4.53736 4.66152 4.69085 4.71109 4.85103 4.88115 4.90266 5.03450 5.07504 5.14784 5.23502 5.30113 5.33573 5.37165 5.52395 5.61415 5.70065 5.84182 6.03982 6.34256 6.67012 6.80469 7.24899 7.40379 8.86390 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.021177 B = 0.003020 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.876225 B = 9269.074440 C =10152.801688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.108 4.108 3 C -0.026 4.026 4 C -0.166 4.166 5 C 0.538 3.462 6 O -0.596 6.596 7 N -0.694 5.694 8 C 0.269 3.731 9 H -0.002 1.002 10 C -0.134 4.134 11 C -0.549 4.549 12 H 0.077 0.923 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.976 3.024 16 H -0.279 1.279 17 H -0.256 1.256 18 H -0.284 1.284 19 C 0.013 3.987 20 C -0.683 4.683 21 S 2.729 3.271 22 N -1.227 6.227 23 O -0.977 6.977 24 O -1.004 7.004 25 C 0.040 3.960 26 C -0.184 4.184 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.155 0.845 31 H 0.405 0.595 32 H 0.044 0.956 33 H 0.010 0.990 34 H 0.069 0.931 35 H 0.266 0.734 36 H 0.131 0.869 37 H 0.430 0.570 38 H 0.433 0.567 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.274 -22.778 5.343 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.109 4.109 3 C -0.045 4.045 4 C -0.170 4.170 5 C 0.326 3.674 6 O -0.479 6.479 7 N -0.342 5.342 8 C 0.165 3.835 9 H 0.016 0.984 10 C -0.193 4.193 11 C -0.587 4.587 12 H 0.095 0.905 13 C -0.186 4.186 14 N -0.556 5.556 15 Si 0.800 3.200 16 H -0.205 1.205 17 H -0.180 1.180 18 H -0.209 1.209 19 C -0.007 4.007 20 C -0.770 4.770 21 S 2.817 3.183 22 N -0.909 5.909 23 O -0.966 6.966 24 O -0.993 6.993 25 C 0.038 3.962 26 C -0.240 4.240 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.172 0.828 31 H 0.242 0.758 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.261 0.739 38 H 0.267 0.733 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.716 -22.819 4.510 27.004 hybrid contribution -0.234 1.722 0.161 1.745 sum -13.951 -21.097 4.671 25.720 Atomic orbital electron populations 1.21041 0.86858 1.04942 1.04554 1.20231 0.98772 0.90989 1.00870 1.21823 0.91565 1.00395 0.90671 1.20006 0.95139 0.92417 1.09410 1.18807 0.87147 0.84977 0.76510 1.90720 1.15723 1.88290 1.53169 1.46186 1.10685 1.05651 1.71720 1.18443 0.91604 0.79814 0.93594 0.98387 1.21904 0.99510 1.00637 0.97218 1.21515 1.01716 0.93800 1.41633 0.90513 1.25844 0.96368 1.01013 0.95398 1.70061 1.17621 1.21206 1.46696 0.85290 0.79226 0.77457 0.78027 1.20494 1.17979 1.20937 1.20916 1.00488 0.90626 0.88690 1.30299 1.06125 1.18271 1.22298 1.00567 0.72027 0.72359 0.73303 1.52531 1.66396 1.34681 1.37290 1.93532 1.77785 1.67836 1.57418 1.93575 1.34446 1.84504 1.86804 1.20048 0.90359 0.97795 0.87963 1.21966 1.03143 0.92180 1.06667 0.88616 0.90345 0.88689 0.82788 0.75797 0.93662 0.97085 0.91230 0.92458 0.85095 0.73923 0.73272 0.85822 0.86888 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.59 71.24 0.68 -0.39 16 2 C -0.11 -1.89 5.87 -19.90 -0.12 -2.00 16 3 C -0.03 -0.61 9.19 22.53 0.21 -0.41 16 4 C -0.17 -5.49 5.87 -20.09 -0.12 -5.61 16 5 C 0.54 23.48 7.74 86.79 0.67 24.15 16 6 O -0.60 -31.81 16.01 -3.87 -0.06 -31.87 16 7 N -0.69 -29.70 5.02 -448.98 -2.25 -31.95 16 8 C 0.27 14.20 2.56 44.24 0.11 14.32 16 9 H 0.00 -0.11 7.58 -2.38 -0.02 -0.13 16 10 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 11 C -0.55 -28.93 8.73 25.60 0.22 -28.71 16 12 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 13 C 0.01 0.75 5.30 84.66 0.45 1.20 16 14 N -0.92 -52.86 11.32 21.45 0.24 -52.61 16 15 Si 0.98 41.53 29.54 68.60 2.03 43.56 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.01 0.42 9.09 22.53 0.20 0.63 16 20 C -0.68 -15.92 5.87 22.23 0.13 -15.79 16 21 S 2.73 56.37 5.58 -56.49 -0.32 56.05 16 22 N -1.23 -11.32 9.39 37.02 0.35 -10.97 16 23 O -0.98 -23.01 15.36 -128.00 -1.97 -24.98 16 24 O -1.00 -30.49 16.96 -128.00 -2.17 -32.66 16 25 C 0.04 0.70 5.88 -19.81 -0.12 0.58 16 26 C -0.18 -1.77 8.98 71.24 0.64 -1.13 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.69 8.09 -2.38 -0.02 0.67 16 29 H 0.09 0.52 5.93 -2.39 -0.01 0.51 16 30 H 0.15 3.03 6.41 -2.91 -0.02 3.01 16 31 H 0.41 14.04 6.57 -92.71 -0.61 13.43 16 32 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 35 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.13 4.79 6.92 -2.91 -0.02 4.77 16 37 H 0.43 1.75 8.92 -96.74 -0.86 0.88 16 38 H 0.43 2.14 8.96 -96.74 -0.87 1.28 16 39 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.11 0.67 5.93 -2.39 -0.01 0.66 16 41 H 0.10 1.27 4.81 -2.39 -0.01 1.26 16 Total: -1.00 -83.77 349.24 -1.73 -85.50 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -1.22 Total: 19.33 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 3.64 Total: -19.39 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -1.66 Total: -95.54 kcal Atomic # 8 Polarization: -85.31 SS G_CDS: -4.20 Total: -89.51 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 56.37 SS G_CDS: -0.32 Total: 56.05 kcal Total: -83.77 -1.73 -85.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081305754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.202 kcal (2) G-P(sol) polarization free energy of solvation -83.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds