Wall clock time and date at job start Tue Mar 31 2020 04:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99960 * 2 1 4 4 O 1.20816 * 120.00212 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99694 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47085 * 179.97438 * 5 3 2 7 7 C 1.33331 * 120.00256 * 270.00020 * 6 5 3 8 8 H 1.07999 * 120.00161 * 141.06525 * 7 6 5 9 9 C 1.46779 * 120.00045 * 321.07169 * 7 6 5 10 10 N 1.29320 * 120.00109 * 160.88984 * 9 7 6 11 11 Si 1.86806 * 119.99973 * 340.88773 * 9 7 6 12 12 H 1.48497 * 109.46811 * 95.16999 * 11 9 7 13 13 H 1.48492 * 109.47285 * 215.17009 * 11 9 7 14 14 H 1.48500 * 109.47000 * 335.17052 * 11 9 7 15 15 C 1.34773 * 119.99875 * 90.00232 * 6 5 3 16 16 O 1.21471 * 120.00176 * 4.77946 * 15 6 5 17 17 C 1.47709 * 120.00310 * 184.78515 * 15 6 5 18 18 C 1.39662 * 120.13864 * 302.90442 * 17 15 6 19 19 C 1.38140 * 119.81712 * 179.97438 * 18 17 15 20 20 F 1.35104 * 119.94855 * 179.97438 * 19 18 17 21 21 C 1.38613 * 120.09837 * 359.74894 * 19 18 17 22 22 C 1.38319 * 120.28708 * 0.50638 * 21 19 18 23 23 C 1.37962 * 120.17912 * 359.49258 * 22 21 19 24 24 N 1.48023 * 120.04967 * 180.23313 * 23 22 21 25 25 O 1.31692 * 120.00093 * 354.86622 * 24 23 22 26 26 O 1.31692 * 119.99595 * 174.86293 * 24 23 22 27 27 H 1.09002 * 109.47409 * 300.00001 * 1 2 3 28 28 H 1.08998 * 109.47462 * 59.99637 * 1 2 3 29 29 H 1.09001 * 109.47508 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47376 * 59.99926 * 5 3 2 31 31 H 1.09003 * 109.47735 * 300.00051 * 5 3 2 32 32 H 0.97000 * 119.99831 * 185.01634 * 10 9 7 33 33 H 1.08002 * 120.08550 * 359.95266 * 18 17 15 34 34 H 1.08001 * 119.85875 * 180.25184 * 21 19 18 35 35 H 1.08003 * 119.90895 * 179.76990 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5662 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1712 3.3183 -1.1551 8 1 3.8629 4.3480 -1.2598 9 6 4.7989 2.6217 -2.2845 10 7 4.6578 3.0796 -3.4857 11 14 5.8015 1.0740 -1.9866 12 1 4.9421 -0.1195 -2.1917 13 1 6.9417 1.0322 -2.9370 14 1 6.3177 1.0789 -0.5942 15 6 4.1723 3.3266 1.1667 16 8 4.0846 2.7230 2.2172 17 6 4.4878 4.7696 1.1682 18 6 5.6011 5.2448 0.4716 19 6 5.8896 6.5957 0.4771 20 9 6.9662 7.0582 -0.1955 21 6 5.0735 7.4780 1.1677 22 6 3.9728 7.0113 1.8634 23 6 3.6738 5.6645 1.8658 24 7 2.4922 5.1689 2.6069 25 8 1.7841 5.9969 3.3467 26 8 2.1492 3.9000 2.5265 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 5.0103 2.5808 -4.2393 33 1 6.2348 4.5578 -0.0696 34 1 5.3004 8.5339 1.1660 35 1 3.3433 7.7038 2.4025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120543041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:45 Heat of formation + Delta-G solvation = -75.555113 kcal Electronic energy + Delta-G solvation = -28788.417375 eV Core-core repulsion = 24286.756831 eV Total energy + Delta-G solvation = -4501.660544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.084 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -49.03082 -40.45925 -39.71918 -38.34601 -37.46795 -35.92808 -35.10126 -33.70825 -32.75016 -31.65255 -31.11768 -28.99746 -26.76898 -26.02113 -25.12475 -23.62342 -22.15149 -21.00385 -19.88556 -18.61273 -17.95743 -17.64071 -17.41711 -16.99721 -16.48522 -16.06714 -15.86498 -15.78285 -15.51967 -15.36136 -15.17450 -14.67012 -14.11445 -13.98127 -13.52551 -13.29375 -13.23275 -13.03428 -12.79492 -12.56083 -12.20869 -11.99032 -11.63948 -11.52307 -11.45797 -10.85959 -10.67980 -10.44632 -10.34817 -10.30272 -10.04733 -9.90042 -9.61670 -9.28218 -9.10121 -9.05533 -8.38818 -7.03768 -4.31126 -0.30878 0.89196 1.36615 1.68553 2.67381 2.81381 2.85199 2.91374 2.97904 3.15276 3.60141 3.63864 3.82321 4.05781 4.37117 4.58941 4.72134 4.92132 4.98165 5.33902 5.38845 5.45006 5.49348 5.55541 5.68575 5.72616 5.82579 5.83439 5.90741 5.97480 6.28870 6.57805 6.62096 6.88834 7.39356 7.46598 7.82511 8.28334 8.40485 8.84066 9.28584 9.97521 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.007058 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.058943 B = 3966.134121 C = 5927.484264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.448 3.552 4 O -0.476 6.476 5 C 0.103 3.897 6 N -0.399 5.399 7 C -0.375 4.375 8 H 0.106 0.894 9 C 0.075 3.925 10 N -0.792 5.792 11 Si 0.867 3.133 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.245 1.245 15 C 0.509 3.491 16 O -0.552 6.552 17 C 0.018 3.982 18 C -0.098 4.098 19 C 0.138 3.862 20 F -0.124 7.124 21 C -0.156 4.156 22 C -0.036 4.036 23 C 0.002 3.998 24 N -0.020 5.020 25 O -0.233 6.233 26 O -0.104 6.104 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.292 0.708 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 1.002 2.100 3.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.287 3.713 4 O -0.359 6.359 5 C -0.021 4.021 6 N -0.116 5.116 7 C -0.503 4.503 8 H 0.124 0.876 9 C -0.145 4.145 10 N -0.419 5.419 11 Si 0.691 3.309 12 H -0.186 1.186 13 H -0.199 1.199 14 H -0.168 1.168 15 C 0.299 3.701 16 O -0.435 6.435 17 C 0.012 3.988 18 C -0.118 4.118 19 C 0.118 3.882 20 F -0.103 7.103 21 C -0.176 4.176 22 C -0.055 4.055 23 C -0.087 4.087 24 N 0.454 4.546 25 O -0.407 6.407 26 O -0.311 6.311 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.186 0.814 34 H 0.172 0.828 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.807 1.401 2.124 3.788 hybrid contribution -0.121 -0.639 -0.347 0.737 sum 2.685 0.762 1.777 3.309 Atomic orbital electron populations 1.23139 0.77327 1.02788 1.02421 1.86490 1.22807 1.34340 1.85082 1.24371 0.92446 0.81451 0.73007 1.90663 1.66314 1.36036 1.42905 1.21495 0.87683 0.87809 1.05093 1.42033 1.54935 1.08738 1.05902 1.20018 1.41526 0.99700 0.89026 0.87644 1.27115 0.94878 0.98214 0.94339 1.68655 1.35648 1.38031 0.99607 0.87029 0.80918 0.81868 0.81098 1.18606 1.19888 1.16846 1.17543 0.82666 0.85656 0.84237 1.90716 1.55274 1.66417 1.31049 1.19586 0.92586 0.95114 0.91493 1.21344 0.97682 0.94290 0.98445 1.17761 0.85052 0.92330 0.93063 1.91552 1.52112 1.89090 1.77498 1.21046 0.95531 1.00944 1.00102 1.20672 0.96162 0.92503 0.96182 1.20210 0.89939 0.93973 1.04571 1.50163 1.01648 1.02952 0.99823 1.96181 1.53038 1.51787 1.39693 1.96403 1.73371 0.93121 1.68176 0.92018 0.92308 0.88770 0.87920 0.86289 0.89571 0.81414 0.82764 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -6.79 10.57 -39.26 -0.41 -7.20 16 3 C 0.45 9.69 8.02 36.00 0.29 9.98 16 4 O -0.48 -11.72 16.18 -18.74 -0.30 -12.02 16 5 C 0.10 2.17 4.85 -5.20 -0.03 2.15 16 6 N -0.40 -9.14 1.64 -115.66 -0.19 -9.32 16 7 C -0.37 -8.83 8.04 -13.45 -0.11 -8.94 16 8 H 0.11 2.70 7.11 -52.49 -0.37 2.33 16 9 C 0.07 1.69 5.51 -15.16 -0.08 1.61 16 10 N -0.79 -18.67 13.87 56.00 0.78 -17.89 16 11 Si 0.87 16.68 25.07 -169.99 -4.26 12.42 16 12 H -0.26 -4.79 6.80 56.52 0.38 -4.41 16 13 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 14 H -0.25 -4.65 7.11 56.52 0.40 -4.25 16 15 C 0.51 11.75 5.59 -12.39 -0.07 11.68 16 16 O -0.55 -13.73 14.27 -18.80 -0.27 -13.99 16 17 C 0.02 0.36 4.76 -104.97 -0.50 -0.14 16 18 C -0.10 -1.68 8.21 -39.09 -0.32 -2.00 16 19 C 0.14 2.01 7.29 -39.48 -0.29 1.72 16 20 F -0.12 -1.74 17.26 2.25 0.04 -1.70 16 21 C -0.16 -1.97 10.02 -39.41 -0.39 -2.36 16 22 C -0.04 -0.53 9.57 -39.65 -0.38 -0.91 16 23 C 0.00 0.03 6.90 -79.52 -0.55 -0.51 16 24 N -0.02 -0.46 4.98 34.17 0.17 -0.29 16 25 O -0.23 -5.04 19.16 -31.56 -0.60 -5.65 16 26 O -0.10 -2.65 15.58 -39.88 -0.62 -3.27 16 27 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 28 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.10 2.05 3.27 -51.93 -0.17 1.88 16 31 H 0.12 2.32 7.36 -51.93 -0.38 1.93 16 32 H 0.29 6.23 8.27 -40.82 -0.34 5.89 16 33 H 0.17 2.84 7.57 -52.49 -0.40 2.44 16 34 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.16 1.99 7.58 -52.48 -0.40 1.60 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -30.36 322.56 -4.74 -35.10 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -2.56 Total: 5.09 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: -1.36 Total: 13.88 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.76 Total: -27.51 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -2.21 Total: -42.14 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -4.26 Total: 12.42 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.36 -4.74 -35.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120543041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.459 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds