Wall clock time and date at job start Tue Mar 31 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99960 * 2 1 4 4 O 1.20816 * 120.00212 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99694 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47085 * 179.97438 * 5 3 2 7 7 C 1.33331 * 120.00256 * 270.00020 * 6 5 3 8 8 H 1.07999 * 120.00161 * 141.06525 * 7 6 5 9 9 C 1.46779 * 120.00045 * 321.07169 * 7 6 5 10 10 N 1.29320 * 120.00109 * 160.88984 * 9 7 6 11 11 Si 1.86806 * 119.99973 * 340.88773 * 9 7 6 12 12 H 1.48497 * 109.46811 * 95.16999 * 11 9 7 13 13 H 1.48492 * 109.47285 * 215.17009 * 11 9 7 14 14 H 1.48500 * 109.47000 * 335.17052 * 11 9 7 15 15 C 1.34773 * 119.99875 * 90.00232 * 6 5 3 16 16 O 1.21471 * 120.00176 * 4.77946 * 15 6 5 17 17 C 1.47709 * 120.00310 * 184.78515 * 15 6 5 18 18 C 1.39662 * 120.13864 * 302.90442 * 17 15 6 19 19 C 1.38140 * 119.81712 * 179.97438 * 18 17 15 20 20 F 1.35104 * 119.94855 * 179.97438 * 19 18 17 21 21 C 1.38613 * 120.09837 * 359.74894 * 19 18 17 22 22 C 1.38319 * 120.28708 * 0.50638 * 21 19 18 23 23 C 1.37962 * 120.17912 * 359.49258 * 22 21 19 24 24 N 1.48023 * 120.04967 * 180.23313 * 23 22 21 25 25 O 1.31692 * 120.00093 * 354.86622 * 24 23 22 26 26 O 1.31692 * 119.99595 * 174.86293 * 24 23 22 27 27 H 1.09002 * 109.47409 * 300.00001 * 1 2 3 28 28 H 1.08998 * 109.47462 * 59.99637 * 1 2 3 29 29 H 1.09001 * 109.47508 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47376 * 59.99926 * 5 3 2 31 31 H 1.09003 * 109.47735 * 300.00051 * 5 3 2 32 32 H 0.97000 * 119.99831 * 185.01634 * 10 9 7 33 33 H 1.08002 * 120.08550 * 359.95266 * 18 17 15 34 34 H 1.08001 * 119.85875 * 180.25184 * 21 19 18 35 35 H 1.08003 * 119.90895 * 179.76990 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5662 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1712 3.3183 -1.1551 8 1 3.8629 4.3480 -1.2598 9 6 4.7989 2.6217 -2.2845 10 7 4.6578 3.0796 -3.4857 11 14 5.8015 1.0740 -1.9866 12 1 4.9421 -0.1195 -2.1917 13 1 6.9417 1.0322 -2.9370 14 1 6.3177 1.0789 -0.5942 15 6 4.1723 3.3266 1.1667 16 8 4.0846 2.7230 2.2172 17 6 4.4878 4.7696 1.1682 18 6 5.6011 5.2448 0.4716 19 6 5.8896 6.5957 0.4771 20 9 6.9662 7.0582 -0.1955 21 6 5.0735 7.4780 1.1677 22 6 3.9728 7.0113 1.8634 23 6 3.6738 5.6645 1.8658 24 7 2.4922 5.1689 2.6069 25 8 1.7841 5.9969 3.3467 26 8 2.1492 3.9000 2.5265 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9564 0.7805 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 5.0103 2.5808 -4.2393 33 1 6.2348 4.5578 -0.0696 34 1 5.3004 8.5339 1.1660 35 1 3.3433 7.7038 2.4025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120543041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:44 Heat of formation + Delta-G solvation = -93.818184 kcal Electronic energy + Delta-G solvation = -28789.209321 eV Core-core repulsion = 24286.756831 eV Total energy + Delta-G solvation = -4502.452490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.084 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.26032 -42.05767 -41.29794 -40.01068 -39.03505 -37.57613 -36.83102 -35.45153 -34.45698 -33.05084 -32.56722 -30.54159 -28.15167 -27.61058 -26.78583 -25.03963 -23.62684 -22.58192 -21.50906 -20.21499 -19.55829 -19.17514 -19.03117 -18.63283 -17.92484 -17.54954 -17.42383 -17.19762 -17.09406 -16.85134 -16.75604 -16.16779 -15.67236 -15.48526 -14.84424 -14.66869 -14.62611 -14.58141 -14.34795 -14.14619 -13.61914 -13.55949 -13.12545 -12.98505 -12.81738 -12.49957 -12.47225 -12.08197 -11.97531 -11.81602 -11.79597 -11.63044 -11.29589 -10.88806 -10.53152 -10.41429 -10.11172 -8.71862 -6.12248 -1.90942 -0.40262 -0.11621 0.08645 1.12166 1.18696 1.24425 1.35262 1.42371 1.74822 2.04333 2.07682 2.30412 2.64289 2.84891 3.18242 3.37759 3.56422 3.67515 3.82071 3.93444 3.96117 4.14424 4.29862 4.32110 4.40893 4.49397 4.54939 4.63994 4.71577 4.74037 4.95130 5.30619 5.30924 5.63851 5.77905 6.02536 6.58406 6.75450 7.11712 7.59385 8.33959 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.010656 B = 0.007058 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.058943 B = 3966.134121 C = 5927.484264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.447 3.553 4 O -0.514 6.514 5 C 0.097 3.903 6 N -0.407 5.407 7 C -0.398 4.398 8 H 0.070 0.930 9 C 0.049 3.951 10 N -0.835 5.835 11 Si 0.911 3.089 12 H -0.244 1.244 13 H -0.263 1.263 14 H -0.245 1.245 15 C 0.505 3.495 16 O -0.581 6.581 17 C -0.010 4.010 18 C -0.106 4.106 19 C 0.161 3.839 20 F -0.112 7.112 21 C -0.120 4.120 22 C -0.018 4.018 23 C -0.022 4.022 24 N -0.018 5.018 25 O -0.176 6.176 26 O -0.201 6.201 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.142 0.858 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.298 0.702 33 H 0.163 0.837 34 H 0.214 0.786 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 3.138 2.760 5.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.289 3.711 4 O -0.401 6.401 5 C -0.027 4.027 6 N -0.124 5.124 7 C -0.526 4.526 8 H 0.088 0.912 9 C -0.168 4.168 10 N -0.464 5.464 11 Si 0.733 3.267 12 H -0.170 1.170 13 H -0.188 1.188 14 H -0.168 1.168 15 C 0.296 3.704 16 O -0.465 6.465 17 C -0.015 4.015 18 C -0.126 4.126 19 C 0.141 3.859 20 F -0.090 7.090 21 C -0.139 4.139 22 C -0.038 4.038 23 C -0.110 4.110 24 N 0.454 4.546 25 O -0.371 6.371 26 O -0.385 6.385 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.160 0.840 30 H 0.131 0.869 31 H 0.147 0.853 32 H 0.111 0.889 33 H 0.180 0.820 34 H 0.230 0.770 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.904 3.301 2.679 5.772 hybrid contribution -0.487 -0.837 -0.329 1.023 sum 3.417 2.464 2.350 4.824 Atomic orbital electron populations 1.23525 0.75002 1.05789 1.02025 1.86469 1.25022 1.32397 1.84312 1.24529 0.92825 0.81742 0.72039 1.90638 1.67146 1.37453 1.44875 1.21628 0.87654 0.87443 1.05929 1.41963 1.55594 1.09311 1.05575 1.19540 1.44110 0.99063 0.89845 0.91195 1.27573 0.94900 1.00638 0.93664 1.68701 1.37430 1.39887 1.00354 0.86332 0.80051 0.79301 0.81058 1.16969 1.18821 1.16821 1.18073 0.81476 0.87000 0.83870 1.90660 1.56203 1.67724 1.31920 1.19545 0.94253 0.94113 0.93581 1.21330 0.97040 0.95986 0.98289 1.17846 0.84896 0.91377 0.91766 1.91599 1.51629 1.88695 1.77120 1.21640 0.92737 1.03085 0.96432 1.21218 0.96679 0.90423 0.95431 1.20717 0.89308 0.95870 1.05094 1.50591 1.02028 1.02780 0.99185 1.96112 1.52319 1.51238 1.37436 1.96454 1.75983 0.93991 1.72057 0.92708 0.92521 0.83992 0.86890 0.85325 0.88937 0.81987 0.76961 0.78743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.56 113.37 1.20 2.06 16 2 O -0.37 -13.65 10.57 -51.43 -0.54 -14.19 16 3 C 0.45 20.33 8.02 71.23 0.57 20.90 16 4 O -0.51 -26.98 16.18 21.99 0.36 -26.62 16 5 C 0.10 4.28 4.85 85.63 0.42 4.70 16 6 N -0.41 -19.68 1.64 -638.16 -1.05 -20.73 16 7 C -0.40 -19.82 8.04 86.70 0.70 -19.13 16 8 H 0.07 3.86 7.11 -2.91 -0.02 3.84 16 9 C 0.05 2.30 5.51 87.30 0.48 2.78 16 10 N -0.83 -40.81 13.87 23.25 0.32 -40.48 16 11 Si 0.91 34.60 25.07 68.60 1.72 36.32 16 12 H -0.24 -8.62 6.80 99.48 0.68 -7.95 16 13 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 14 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 15 C 0.51 24.58 5.59 86.75 0.49 25.07 16 16 O -0.58 -30.62 14.27 19.50 0.28 -30.34 16 17 C -0.01 -0.42 4.76 -20.09 -0.10 -0.51 16 18 C -0.11 -3.63 8.21 22.59 0.19 -3.44 16 19 C 0.16 4.14 7.29 22.34 0.16 4.30 16 20 F -0.11 -2.69 17.26 44.97 0.78 -1.92 16 21 C -0.12 -2.33 10.02 22.38 0.22 -2.10 16 22 C -0.02 -0.46 9.57 22.22 0.21 -0.25 16 23 C -0.02 -0.82 6.90 36.65 0.25 -0.57 16 24 N -0.02 -0.82 4.98 -45.81 -0.23 -1.05 16 25 O -0.18 -7.22 19.16 3.53 0.07 -7.15 16 26 O -0.20 -10.80 15.58 11.48 0.18 -10.62 16 27 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 28 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.14 2.71 8.14 -2.39 -0.02 2.70 16 30 H 0.11 4.62 3.27 -2.39 -0.01 4.61 16 31 H 0.13 5.27 7.36 -2.39 -0.02 5.25 16 32 H 0.30 13.11 8.27 -92.71 -0.77 12.34 16 33 H 0.16 5.65 7.57 -2.91 -0.02 5.63 16 34 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.20 3.62 7.58 -2.91 -0.02 3.60 16 Total: -1.00 -72.91 322.56 7.82 -65.08 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.15 Total: 17.89 kcal Atomic # 6 Polarization: 29.01 SS G_CDS: 4.79 Total: 33.80 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.95 Total: -62.26 kcal Atomic # 8 Polarization: -89.26 SS G_CDS: 0.34 Total: -88.92 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 34.60 SS G_CDS: 1.72 Total: 36.32 kcal Total: -72.91 7.82 -65.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120543041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.735 kcal (2) G-P(sol) polarization free energy of solvation -72.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds