Wall clock time and date at job start Tue Mar 31 2020 05:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38540 * 119.95259 * 2 1 4 4 N 1.33526 * 133.87359 * 359.92919 * 3 2 1 5 5 C 1.31033 * 109.83038 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 125.16123 * 180.02562 * 5 4 3 7 7 N 1.34843 * 109.67547 * 0.02562 * 5 4 3 8 8 C 1.46500 * 126.51902 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47473 * 90.02149 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 C 1.38221 * 106.95721 * 0.22209 * 7 5 4 20 20 C 1.41037 * 134.56795 * 180.35621 * 19 7 5 21 21 O 1.21814 * 120.37976 * 359.41742 * 20 19 7 22 22 N 1.34926 * 119.24335 * 179.64091 * 20 19 7 23 23 C 1.46495 * 119.50958 * 179.77566 * 22 20 19 24 24 C 1.34423 * 120.98594 * 359.80188 * 22 20 19 25 25 O 1.21602 * 119.17014 * 179.97438 * 24 22 20 26 26 H 1.08996 * 109.47053 * 90.00124 * 1 2 3 27 27 H 1.09005 * 109.47381 * 210.00076 * 1 2 3 28 28 H 1.08994 * 109.46996 * 330.00118 * 1 2 3 29 29 H 1.09002 * 109.47129 * 330.01892 * 8 7 5 30 30 H 1.08998 * 109.46845 * 210.02698 * 8 7 5 31 31 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 32 32 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 34 34 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 35 35 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47437 * 180.02562 * 23 22 20 37 37 H 1.09003 * 109.47173 * 300.02734 * 23 22 20 38 38 H 1.09004 * 109.46703 * 60.02020 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2004 0.0000 4 7 1.7848 2.4828 -0.0012 5 6 2.8448 3.2531 -0.0011 6 17 2.8193 4.9888 -0.0017 7 7 3.9585 2.4928 -0.0004 8 6 5.3423 2.9736 -0.0006 9 6 5.8241 3.1416 1.4418 10 6 7.2692 3.6444 1.4415 11 6 7.7439 3.8092 2.8623 12 1 7.0811 3.5789 3.6833 13 6 9.0244 4.2542 3.1140 14 7 9.8317 4.5342 2.1143 15 14 9.6127 4.4592 4.8751 16 1 10.2280 3.1909 5.3422 17 1 10.6187 5.5497 4.9372 18 1 8.4590 4.7998 5.7458 19 6 3.5460 1.1736 -0.0052 20 6 4.2096 -0.0709 -0.0007 21 8 5.4267 -0.1201 -0.0011 22 7 3.4809 -1.2065 -0.0006 23 6 4.1642 -2.5023 -0.0010 24 6 2.1373 -1.1665 -0.0007 25 8 1.5133 -2.2103 -0.0011 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 5.3934 3.9333 -0.5148 30 1 5.9776 2.2520 -0.5142 31 1 5.7730 2.1819 1.9561 32 1 5.1888 3.8633 1.9553 33 1 7.9048 2.9231 0.9279 34 1 7.3199 4.6041 0.9274 35 1 10.7327 4.8468 2.2913 36 1 3.4246 -3.3031 -0.0013 37 1 4.7882 -2.5838 -0.8910 38 1 4.7882 -2.5843 0.8890 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128904650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:07 Heat of formation + Delta-G solvation = 12.996184 kcal Electronic energy + Delta-G solvation = -25619.006077 eV Core-core repulsion = 21717.647626 eV Total energy + Delta-G solvation = -3901.358451 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.25986 -41.31382 -39.21716 -37.39392 -36.69502 -35.55633 -35.14195 -33.26218 -31.45938 -30.60362 -27.97116 -27.21042 -26.85259 -24.13424 -23.86879 -23.20549 -21.39316 -20.64763 -19.59749 -18.70898 -17.56060 -17.37570 -16.66777 -16.17747 -15.96527 -15.75145 -15.49428 -15.15403 -15.08285 -14.52763 -14.37551 -14.03257 -13.57010 -13.09888 -12.83108 -12.65102 -12.58017 -12.28815 -12.19423 -12.06765 -11.70840 -11.30758 -11.27246 -10.95909 -10.84431 -10.69099 -10.59355 -10.35442 -10.08030 -9.97433 -9.82122 -9.53223 -9.22545 -8.43814 -8.32395 -6.08727 -4.11674 0.63623 0.85228 1.44677 1.74152 2.21459 2.57355 2.65993 3.22817 3.27899 3.34325 3.37385 3.79186 4.14323 4.39679 4.67662 4.84474 5.02816 5.10421 5.11753 5.20187 5.25392 5.27919 5.34807 5.44213 5.48598 5.56530 5.65280 5.72567 6.12827 6.21837 6.35892 6.59594 6.80041 6.92116 7.13598 7.26346 7.50492 7.61680 7.69758 7.88223 8.28876 8.93516 9.52977 11.02553 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.003769 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.597655 B = 7426.988047 C = 8859.983608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.509 5.509 3 C 0.314 3.686 4 N -0.478 5.478 5 C 0.310 3.690 6 Cl 0.068 6.932 7 N -0.379 5.379 8 C 0.089 3.911 9 C -0.119 4.119 10 C 0.028 3.972 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.130 4.130 20 C 0.591 3.409 21 O -0.489 6.489 22 N -0.552 5.552 23 C 0.084 3.916 24 C 0.711 3.289 25 O -0.540 6.540 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.023 0.977 34 H 0.021 0.979 35 H 0.262 0.738 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.754 -7.047 -7.422 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.237 5.237 3 C 0.081 3.919 4 N -0.205 5.205 5 C 0.022 3.978 6 Cl 0.096 6.904 7 N -0.061 5.061 8 C -0.031 4.031 9 C -0.157 4.157 10 C -0.010 4.010 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.248 4.248 20 C 0.384 3.616 21 O -0.362 6.362 22 N -0.298 5.298 23 C -0.057 4.057 24 C 0.414 3.586 25 O -0.414 6.414 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.857 -7.170 -7.469 20.641 hybrid contribution 1.166 0.327 0.950 1.539 sum -16.690 -6.843 -6.519 19.181 Atomic orbital electron populations 1.21961 0.74276 1.05006 1.03779 1.43765 1.08752 1.00596 1.70631 1.17761 0.86973 0.86799 1.00330 1.69432 1.27415 0.98249 1.25407 1.23019 0.81704 0.88793 1.04331 1.98481 1.97933 0.97322 1.96695 1.45166 1.09045 1.02925 1.48937 1.22838 0.75303 1.01794 1.03127 1.22050 1.01314 1.01779 0.90577 1.19030 0.87597 0.96437 0.97919 1.21122 0.98123 1.44755 0.92032 0.92641 1.24991 0.96751 0.95293 0.97178 1.69946 1.07315 1.45261 1.30701 0.86575 0.78613 0.77861 0.84875 1.20571 1.21124 1.19841 1.18769 0.93193 0.86697 1.26183 1.15349 0.86934 0.82066 0.77289 1.90985 1.11947 1.86874 1.46395 1.45804 1.05799 1.09846 1.68304 1.21983 0.98110 0.81322 1.04272 1.15413 0.81538 0.83275 0.78392 1.91000 1.65862 1.29120 1.55392 0.90979 0.88921 0.88995 0.88010 0.87110 0.92123 0.92343 0.95902 0.96101 0.92850 0.87791 0.90048 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.39 59.85 0.62 1.41 16 2 N -0.51 -6.23 3.06 -128.31 -0.39 -6.62 16 3 C 0.31 4.37 7.63 -154.57 -1.18 3.19 16 4 N -0.48 -6.62 11.16 -10.45 -0.12 -6.74 16 5 C 0.31 4.31 8.46 -90.11 -0.76 3.55 16 6 Cl 0.07 0.80 28.71 -51.86 -1.49 -0.69 16 7 N -0.38 -5.75 2.78 -112.16 -0.31 -6.07 16 8 C 0.09 1.42 5.76 -4.04 -0.02 1.40 16 9 C -0.12 -2.33 5.48 -26.73 -0.15 -2.47 16 10 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 11 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 C -0.13 -1.99 6.90 -83.66 -0.58 -2.57 16 20 C 0.59 9.17 7.43 -15.13 -0.11 9.05 16 21 O -0.49 -8.80 15.99 5.09 0.08 -8.71 16 22 N -0.55 -7.29 2.96 -131.66 -0.39 -7.68 16 23 C 0.08 0.85 9.99 59.84 0.60 1.45 16 24 C 0.71 9.28 8.12 -87.36 -0.71 8.57 16 25 O -0.54 -7.46 15.02 5.28 0.08 -7.38 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.74 7.38 -51.93 -0.38 0.36 16 28 H 0.09 0.73 8.01 -51.93 -0.42 0.31 16 29 H 0.10 1.44 7.77 -51.93 -0.40 1.03 16 30 H 0.11 1.85 7.27 -51.93 -0.38 1.48 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.10 0.94 6.80 -51.93 -0.35 0.59 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 343.81 15.07 5.18 5.18 Total: -1.00 -32.04 343.81 -8.92 -40.96 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -4.43 Total: -4.18 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -2.84 Total: 11.00 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.47 Total: -52.50 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.16 Total: -16.09 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: 0.80 SS G_CDS: -1.49 Total: -0.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.04 -8.92 -40.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128904650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.954 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds