Wall clock time and date at job start Tue Mar 31 2020 05:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38540 * 119.95259 * 2 1 4 4 N 1.33526 * 133.87359 * 359.92919 * 3 2 1 5 5 C 1.31033 * 109.83038 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 125.16123 * 180.02562 * 5 4 3 7 7 N 1.34843 * 109.67547 * 0.02562 * 5 4 3 8 8 C 1.46500 * 126.51902 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47473 * 90.02149 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 C 1.38221 * 106.95721 * 0.22209 * 7 5 4 20 20 C 1.41037 * 134.56795 * 180.35621 * 19 7 5 21 21 O 1.21814 * 120.37976 * 359.41742 * 20 19 7 22 22 N 1.34926 * 119.24335 * 179.64091 * 20 19 7 23 23 C 1.46495 * 119.50958 * 179.77566 * 22 20 19 24 24 C 1.34423 * 120.98594 * 359.80188 * 22 20 19 25 25 O 1.21602 * 119.17014 * 179.97438 * 24 22 20 26 26 H 1.08996 * 109.47053 * 90.00124 * 1 2 3 27 27 H 1.09005 * 109.47381 * 210.00076 * 1 2 3 28 28 H 1.08994 * 109.46996 * 330.00118 * 1 2 3 29 29 H 1.09002 * 109.47129 * 330.01892 * 8 7 5 30 30 H 1.08998 * 109.46845 * 210.02698 * 8 7 5 31 31 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 32 32 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 34 34 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 35 35 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47437 * 180.02562 * 23 22 20 37 37 H 1.09003 * 109.47173 * 300.02734 * 23 22 20 38 38 H 1.09004 * 109.46703 * 60.02020 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2004 0.0000 4 7 1.7848 2.4828 -0.0012 5 6 2.8448 3.2531 -0.0011 6 17 2.8193 4.9888 -0.0017 7 7 3.9585 2.4928 -0.0004 8 6 5.3423 2.9736 -0.0006 9 6 5.8241 3.1416 1.4418 10 6 7.2692 3.6444 1.4415 11 6 7.7439 3.8092 2.8623 12 1 7.0811 3.5789 3.6833 13 6 9.0244 4.2542 3.1140 14 7 9.8317 4.5342 2.1143 15 14 9.6127 4.4592 4.8751 16 1 10.2280 3.1909 5.3422 17 1 10.6187 5.5497 4.9372 18 1 8.4590 4.7998 5.7458 19 6 3.5460 1.1736 -0.0052 20 6 4.2096 -0.0709 -0.0007 21 8 5.4267 -0.1201 -0.0011 22 7 3.4809 -1.2065 -0.0006 23 6 4.1642 -2.5023 -0.0010 24 6 2.1373 -1.1665 -0.0007 25 8 1.5133 -2.2103 -0.0011 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 5.3934 3.9333 -0.5148 30 1 5.9776 2.2520 -0.5142 31 1 5.7730 2.1819 1.9561 32 1 5.1888 3.8633 1.9553 33 1 7.9048 2.9231 0.9279 34 1 7.3199 4.6041 0.9274 35 1 10.7327 4.8468 2.2913 36 1 3.4246 -3.3031 -0.0013 37 1 4.7882 -2.5838 -0.8910 38 1 4.7882 -2.5843 0.8890 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128904650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:06 Heat of formation + Delta-G solvation = -4.716792 kcal Electronic energy + Delta-G solvation = -25619.774169 eV Core-core repulsion = 21717.647626 eV Total energy + Delta-G solvation = -3902.126543 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.36932 -42.39866 -40.36206 -38.43427 -37.81895 -36.76432 -36.45301 -35.03763 -33.05863 -31.75571 -28.95950 -28.81055 -27.82844 -25.69881 -25.02540 -24.41077 -22.67969 -22.22596 -20.70817 -19.86493 -18.69501 -18.62369 -18.21293 -17.56194 -17.05507 -16.92814 -16.54936 -16.50751 -16.27946 -16.10329 -15.87774 -15.19472 -14.66606 -14.42797 -14.11094 -13.94314 -13.58159 -13.43057 -13.28518 -13.21618 -13.02647 -12.91287 -12.73362 -12.59173 -12.36498 -11.99203 -11.94732 -11.70402 -11.57510 -11.50235 -11.29391 -11.11490 -10.77088 -10.57408 -9.43468 -8.22343 -6.32666 -0.51913 -0.22483 0.44014 0.64489 1.08793 1.39589 1.40243 1.43903 1.51393 1.59492 2.12760 2.39590 2.68361 3.04831 3.11946 3.47016 3.85307 3.90123 4.05499 4.23810 4.29692 4.29917 4.37964 4.39255 4.48824 4.56867 4.72943 4.76889 4.79646 4.81700 5.00822 5.17656 5.29055 5.44579 5.62707 5.78690 5.84552 6.03148 6.14900 6.19475 6.63215 6.81643 7.36327 8.89215 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.003769 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.597655 B = 7426.988047 C = 8859.983608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.506 5.506 3 C 0.327 3.673 4 N -0.475 5.475 5 C 0.315 3.685 6 Cl 0.089 6.911 7 N -0.388 5.388 8 C 0.103 3.897 9 C -0.101 4.101 10 C 0.032 3.968 11 C -0.544 4.544 12 H 0.056 0.944 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.959 3.041 16 H -0.276 1.276 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.156 4.156 20 C 0.590 3.410 21 O -0.525 6.525 22 N -0.551 5.551 23 C 0.079 3.921 24 C 0.711 3.289 25 O -0.546 6.546 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.066 0.934 33 H -0.004 1.004 34 H 0.012 0.988 35 H 0.265 0.735 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.435 -6.880 -6.955 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.234 5.234 3 C 0.094 3.906 4 N -0.203 5.203 5 C 0.027 3.973 6 Cl 0.117 6.883 7 N -0.071 5.071 8 C -0.017 4.017 9 C -0.140 4.140 10 C -0.005 4.005 11 C -0.582 4.582 12 H 0.074 0.926 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.784 3.216 16 H -0.202 1.202 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.274 4.274 20 C 0.384 3.616 21 O -0.401 6.401 22 N -0.295 5.295 23 C -0.060 4.060 24 C 0.413 3.587 25 O -0.420 6.420 26 H 0.107 0.893 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.014 0.986 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.599 -7.036 -7.004 21.970 hybrid contribution 1.590 0.276 0.775 1.790 sum -18.009 -6.760 -6.229 20.220 Atomic orbital electron populations 1.22247 0.72083 1.05930 1.05200 1.44014 1.10005 0.99738 1.69636 1.17853 0.86549 0.87296 0.98907 1.69516 1.27021 0.98069 1.25692 1.23358 0.81304 0.89715 1.02879 1.98495 1.97855 0.95493 1.96488 1.45003 1.08730 1.03221 1.50145 1.22484 0.75972 1.02667 1.00592 1.21704 0.98551 1.00635 0.93079 1.18872 0.90159 0.95320 0.96177 1.21562 0.98583 1.44593 0.93438 0.92611 1.25859 0.96965 0.94941 1.01452 1.70059 1.07722 1.46080 1.32893 0.85532 0.78322 0.77934 0.79800 1.20167 1.20463 1.18820 1.18933 0.94025 0.86741 1.27692 1.15478 0.86605 0.82709 0.76780 1.90964 1.13259 1.87364 1.48507 1.45911 1.06032 1.10117 1.67454 1.22189 0.98559 0.80414 1.04880 1.15456 0.81364 0.83473 0.78375 1.90999 1.65863 1.29290 1.55817 0.89326 0.88089 0.88009 0.85888 0.88074 0.93833 0.91552 0.98570 0.96979 0.92647 0.86456 0.89174 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.39 127.77 1.33 2.59 16 2 N -0.51 -11.48 3.06 -678.19 -2.07 -13.56 16 3 C 0.33 8.62 7.63 132.84 1.01 9.63 16 4 N -0.48 -12.26 11.16 -186.98 -2.09 -14.35 16 5 C 0.32 8.28 8.46 180.17 1.52 9.81 16 6 Cl 0.09 1.93 28.71 -2.72 -0.08 1.85 16 7 N -0.39 -11.51 2.78 -508.78 -1.42 -12.92 16 8 C 0.10 3.29 5.76 86.38 0.50 3.78 16 9 C -0.10 -4.00 5.48 30.59 0.17 -3.83 16 10 C 0.03 1.62 4.97 29.85 0.15 1.77 16 11 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16 12 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 13 C 0.01 0.36 5.46 84.66 0.46 0.82 16 14 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 15 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 19 C -0.16 -4.72 6.90 38.99 0.27 -4.45 16 20 C 0.59 18.38 7.43 84.90 0.63 19.01 16 21 O -0.52 -19.40 15.99 -4.71 -0.08 -19.47 16 22 N -0.55 -14.22 2.96 -807.01 -2.39 -16.61 16 23 C 0.08 1.57 9.99 127.77 1.28 2.84 16 24 C 0.71 17.58 8.12 179.21 1.45 19.04 16 25 O -0.55 -14.11 15.02 -4.04 -0.06 -14.17 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.37 7.38 -2.38 -0.02 1.35 16 28 H 0.10 1.34 8.01 -2.39 -0.02 1.32 16 29 H 0.12 3.36 7.77 -2.39 -0.02 3.34 16 30 H 0.10 3.47 7.27 -2.39 -0.02 3.45 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.12 1.99 6.80 -2.39 -0.02 1.97 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -68.16 343.81 4.24 -63.92 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.10 Total: 3.27 kcal Atomic # 6 Polarization: 21.99 SS G_CDS: 9.01 Total: 31.00 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -7.68 Total: -112.07 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.14 Total: -33.64 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 17 Polarization: 1.93 SS G_CDS: -0.08 Total: 1.85 kcal Total: -68.16 4.24 -63.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128904650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.199 kcal (2) G-P(sol) polarization free energy of solvation -68.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds