Wall clock time and date at job start Tue Mar 31 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48505 * 109.47024 * 270.00530 * 3 2 1 5 5 H 1.48504 * 109.47133 * 30.00281 * 3 2 1 6 6 H 1.48500 * 109.46982 * 150.00563 * 3 2 1 7 7 C 1.37871 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99742 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00516 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46961 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99622 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00073 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99618 * 180.02562 * 12 11 10 15 15 C 1.53008 * 109.46799 * 179.97438 * 14 12 11 16 16 N 1.46501 * 109.46803 * 179.97438 * 15 14 12 17 17 S 1.65601 * 119.99590 * 164.99984 * 16 15 14 18 18 O 1.42098 * 106.40290 * 311.46059 * 17 16 15 19 19 O 1.42107 * 106.39817 * 178.54092 * 17 16 15 20 20 C 1.76199 * 107.21620 * 65.00305 * 17 16 15 21 21 C 1.38237 * 119.99920 * 90.00183 * 20 17 16 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 17 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00031 * 269.97364 * 20 17 16 26 26 H 0.97004 * 120.00038 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46851 * 60.00121 * 9 7 2 28 28 H 1.08994 * 109.47332 * 299.99861 * 9 7 2 29 29 H 1.09007 * 109.46581 * 60.00535 * 10 9 7 30 30 H 1.08994 * 109.47272 * 300.00478 * 10 9 7 31 31 H 0.96994 * 120.00282 * 0.02562 * 11 10 9 32 32 H 1.08997 * 109.47159 * 60.00429 * 14 12 11 33 33 H 1.08994 * 109.47462 * 299.99811 * 14 12 11 34 34 H 1.08997 * 109.46753 * 60.00378 * 15 14 12 35 35 H 1.08994 * 109.47121 * 300.00217 * 15 14 12 36 36 H 0.97000 * 120.00223 * 345.00906 * 16 15 14 37 37 H 1.08005 * 120.00088 * 359.96860 * 21 20 17 38 38 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 41 41 H 1.07999 * 119.99990 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4865 -2.6365 -0.0009 12 6 6.1603 -3.8037 -0.0014 13 8 5.5539 -4.8540 -0.0022 14 6 7.6674 -3.8036 -0.0007 15 6 8.1774 -5.2462 -0.0007 16 7 9.6424 -5.2462 -0.0007 17 16 10.4703 -6.6315 0.3705 18 8 9.8893 -7.1386 1.5640 19 8 11.8512 -6.3179 0.2505 20 6 10.1152 -7.8060 -0.8940 21 6 10.9156 -7.8737 -2.0191 22 6 10.6365 -8.7948 -3.0113 23 6 9.5579 -9.6490 -2.8781 24 6 8.7546 -9.5780 -1.7553 25 6 9.0365 -8.6602 -0.7607 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6804 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 3.6578 -3.1505 -0.8909 30 1 3.6585 -3.1502 0.8891 31 1 5.9715 -1.7965 -0.0006 32 1 8.0303 -3.2904 0.8897 33 1 8.0311 -3.2893 -0.8902 34 1 7.8145 -5.7598 -0.8910 35 1 7.8137 -5.7602 0.8890 36 1 10.1274 -4.4347 -0.2180 37 1 11.7583 -7.2063 -2.1232 38 1 11.2616 -8.8474 -3.8905 39 1 9.3402 -10.3689 -3.6532 40 1 7.9093 -10.2423 -1.6532 41 1 8.4112 -8.6073 0.1182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273149003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:53 Heat of formation + Delta-G solvation = -95.896333 kcal Electronic energy + Delta-G solvation = -24256.658583 eV Core-core repulsion = 20456.162248 eV Total energy + Delta-G solvation = -3800.496335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55500 -39.48076 -37.56202 -36.17798 -36.05829 -34.99809 -32.86442 -31.73142 -31.45988 -31.03489 -29.68665 -25.33226 -23.66193 -23.44139 -23.10203 -20.86501 -20.38457 -19.76801 -18.57467 -17.79100 -17.14091 -16.82529 -16.49799 -16.22168 -15.90283 -15.46507 -15.15593 -14.98894 -14.65941 -14.43378 -14.20804 -13.95958 -13.51708 -13.40153 -13.20955 -12.69530 -12.66634 -12.53344 -12.41182 -12.31384 -12.01780 -11.85233 -11.70243 -11.53709 -11.23942 -11.13122 -10.44756 -10.34221 -10.01092 -9.92436 -9.84032 -9.60117 -9.47644 -9.34835 -8.69752 -8.60327 -6.14627 -4.15117 0.01433 0.41469 0.86192 2.58506 2.80338 3.08776 3.21950 3.29707 3.30905 3.43186 3.53751 3.98129 4.34087 4.39413 4.42944 4.46017 4.54337 4.81325 4.87375 4.89516 5.00920 5.16323 5.18183 5.24063 5.28866 5.47874 5.57711 5.63055 5.76442 5.78461 5.91661 6.04770 6.14797 6.38667 6.50325 6.55606 6.66359 7.07412 7.17872 7.62367 7.79129 8.38083 8.45925 8.89555 9.45267 10.98377 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.002127 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.136630 B =13161.092807 C =13791.920749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.725 5.725 12 C 0.509 3.491 13 O -0.546 6.546 14 C -0.150 4.150 15 C 0.130 3.870 16 N -1.118 6.118 17 S 2.699 3.301 18 O -0.952 6.952 19 O -0.960 6.960 20 C -0.678 4.678 21 C -0.021 4.021 22 C -0.143 4.143 23 C -0.064 4.064 24 C -0.139 4.139 25 C -0.018 4.018 26 H 0.265 0.735 27 H 0.022 0.978 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.419 0.581 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.149 -14.634 -5.267 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.375 5.375 12 C 0.293 3.707 13 O -0.424 6.424 14 C -0.191 4.191 15 C 0.004 3.996 16 N -0.879 5.879 17 S 2.788 3.212 18 O -0.942 6.942 19 O -0.950 6.950 20 C -0.765 4.765 21 C -0.040 4.040 22 C -0.162 4.162 23 C -0.082 4.082 24 C -0.158 4.158 25 C -0.037 4.037 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.253 0.747 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 24.939 -15.573 -4.495 29.744 hybrid contribution 0.360 1.479 -0.910 1.774 sum 25.298 -14.094 -5.405 29.460 Atomic orbital electron populations 1.69900 1.06305 1.27096 1.50289 1.25007 0.94776 0.99182 0.94355 0.86743 0.80252 0.83526 0.78473 1.20248 1.21255 1.19089 1.20913 0.88646 0.94902 1.51784 0.90622 1.19795 0.98041 0.91319 0.96828 1.21534 0.75894 1.00189 1.01713 1.46329 1.09310 1.07870 1.73969 1.20302 0.89202 0.84342 0.76838 1.90713 1.70436 1.31222 1.50062 1.21808 0.93797 0.98173 1.05342 1.21069 0.77077 0.97497 1.03975 1.55510 1.16004 1.27647 1.88698 1.01737 0.72769 0.72763 0.73921 1.93610 1.78584 1.79577 1.42464 1.93596 1.30696 1.83737 1.87013 1.30944 1.07514 1.19838 1.18199 1.20939 0.96108 0.96088 0.90861 1.21319 0.98543 0.96751 0.99594 1.21545 0.93247 0.96516 0.96900 1.21372 1.00482 0.99627 0.94314 1.21052 0.93030 0.91500 0.98167 0.92514 0.95983 0.96453 0.91894 0.91819 0.76949 0.87970 0.88199 0.90643 0.89028 0.74663 0.84255 0.85003 0.85149 0.84767 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.71 16 8 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 10 C 0.13 2.49 5.61 -4.04 -0.02 2.47 16 11 N -0.72 -10.70 5.56 -60.29 -0.33 -11.03 16 12 C 0.51 7.16 7.83 -10.98 -0.09 7.08 16 13 O -0.55 -9.85 15.98 5.56 0.09 -9.76 16 14 C -0.15 -1.31 5.84 -27.88 -0.16 -1.48 16 15 C 0.13 1.20 5.51 -4.04 -0.02 1.18 16 16 N -1.12 -8.29 6.00 -10.61 -0.06 -8.36 16 17 S 2.70 25.82 5.74 -107.50 -0.62 25.20 16 18 O -0.95 -12.08 16.75 -57.17 -0.96 -13.04 16 19 O -0.96 -11.01 17.28 -57.17 -0.99 -11.99 16 20 C -0.68 -6.12 5.95 -39.58 -0.24 -6.35 16 21 C -0.02 -0.16 9.52 -39.58 -0.38 -0.54 16 22 C -0.14 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.06 -0.42 10.05 -39.58 -0.40 -0.82 16 24 C -0.14 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.02 -0.16 9.52 -39.58 -0.38 -0.54 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 27 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 28 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.40 4.69 8.47 -40.82 -0.35 4.34 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.09 0.97 7.71 -51.93 -0.40 0.57 16 36 H 0.42 2.07 8.65 -34.47 -0.30 1.78 16 37 H 0.14 0.89 7.62 -52.48 -0.40 0.49 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.14 1.19 7.62 -52.49 -0.40 0.79 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -36.80 364.68 -9.87 -46.67 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.58 Total: 2.37 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -3.02 Total: -15.30 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.37 Total: -45.58 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.86 Total: -34.80 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Atomic # 16 Polarization: 25.82 SS G_CDS: -0.62 Total: 25.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.80 -9.87 -46.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273149003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.225 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds