Wall clock time and date at job start Tue Mar 31 2020 04:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36931 * 119.99878 * 2 1 4 4 H 1.07998 * 120.00191 * 203.09439 * 3 2 1 5 5 C 1.38808 * 120.00150 * 23.10176 * 3 2 1 6 6 N 1.31623 * 120.00217 * 11.87751 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 191.88281 * 5 3 2 8 8 H 1.48498 * 109.47221 * 89.99923 * 7 5 3 9 9 H 1.48502 * 109.47199 * 209.99651 * 7 5 3 10 10 H 1.48504 * 109.47312 * 329.99532 * 7 5 3 11 11 S 1.65598 * 119.99877 * 180.02562 * 2 1 3 12 12 O 1.42098 * 106.40457 * 203.53953 * 11 2 1 13 13 O 1.42098 * 106.40360 * 336.46210 * 11 2 1 14 14 C 1.76207 * 107.21755 * 90.00256 * 11 2 1 15 15 C 1.38284 * 119.92613 * 269.72251 * 14 11 2 16 16 C 1.38121 * 120.06413 * 179.76804 * 15 14 11 17 17 C 1.38858 * 119.92869 * 0.52743 * 16 15 14 18 18 N 1.39960 * 120.06586 * 179.70228 * 17 16 15 19 19 C 1.47088 * 125.55898 * 359.74521 * 18 17 16 20 20 C 1.54091 * 103.77645 * 179.97438 * 19 18 17 21 21 O 1.45699 * 104.00940 * 0.31969 * 20 19 18 22 22 C 1.33782 * 109.47830 * 359.79042 * 21 20 19 23 23 O 1.21503 * 123.07550 * 180.02562 * 22 21 20 24 24 C 1.38860 * 119.86240 * 359.72879 * 17 16 15 25 25 C 1.38114 * 119.93296 * 359.97438 * 24 17 16 26 26 H 1.08996 * 109.47187 * 275.05580 * 1 2 3 27 27 H 1.09001 * 109.47196 * 35.05693 * 1 2 3 28 28 H 1.09001 * 109.46796 * 155.05380 * 1 2 3 29 29 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 30 30 H 1.07999 * 119.96847 * 359.97438 * 15 14 11 31 31 H 1.08001 * 120.03253 * 180.23486 * 16 15 14 32 32 H 1.08998 * 110.56380 * 298.60446 * 19 18 17 33 33 H 1.08998 * 110.56966 * 61.45774 * 19 18 17 34 34 H 1.08997 * 110.70043 * 241.60095 * 20 19 18 35 35 H 1.08997 * 110.46030 * 118.92548 * 20 19 18 36 36 H 1.08001 * 120.03432 * 179.97438 * 24 17 16 37 37 H 1.07993 * 119.96485 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1647 1.2234 -0.3669 5 6 1.5391 2.3398 0.4717 6 7 0.4021 2.2608 1.1299 7 14 2.3311 4.0049 0.1721 8 1 1.8358 4.5649 -1.1110 9 1 1.9808 4.9266 1.2825 10 1 3.8062 3.8468 0.1066 11 16 2.2930 -1.4341 -0.0006 12 8 3.5759 -1.1571 0.5439 13 8 1.4113 -2.4067 0.5433 14 6 2.5538 -1.8850 -1.6839 15 6 1.6208 -2.6656 -2.3416 16 6 1.8201 -3.0167 -3.6625 17 6 2.9640 -2.5942 -4.3267 18 7 3.1718 -2.9536 -5.6633 19 6 2.2652 -3.7761 -6.4788 20 6 2.9713 -3.8548 -7.8461 21 8 4.1926 -3.0831 -7.6574 22 6 4.2325 -2.6100 -6.4067 23 8 5.1466 -1.9304 -5.9837 24 6 3.9015 -1.8150 -3.6618 25 6 3.6935 -1.4621 -2.3428 26 1 -0.3633 0.0906 1.0236 27 1 -0.3634 0.8412 -0.5903 28 1 -0.3633 -0.9318 -0.4334 29 1 -0.0244 3.0671 1.4599 30 1 0.7339 -2.9982 -1.8229 31 1 1.0892 -3.6232 -4.1767 32 1 2.1562 -4.7703 -6.0454 33 1 1.2937 -3.2920 -6.5778 34 1 2.3535 -3.4080 -8.6250 35 1 3.2075 -4.8897 -8.0939 36 1 4.7924 -1.4852 -4.1756 37 1 4.4221 -0.8557 -1.8254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273499486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:27 Heat of formation + Delta-G solvation = -83.858246 kcal Electronic energy + Delta-G solvation = -25625.508908 eV Core-core repulsion = 21689.701489 eV Total energy + Delta-G solvation = -3935.807419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.28181 -39.19180 -37.66145 -36.27252 -35.84783 -35.41329 -34.83542 -31.24340 -31.09147 -30.91923 -29.41256 -26.23673 -24.76433 -24.19208 -23.37300 -22.16609 -21.30906 -18.69254 -18.46766 -17.91585 -17.77399 -17.29618 -16.68924 -16.32517 -15.75411 -15.13577 -14.80584 -14.65934 -14.45939 -14.38258 -14.25445 -14.07061 -13.51271 -13.13038 -13.08139 -12.84121 -12.79078 -12.46315 -11.83252 -11.59281 -11.23242 -11.21921 -11.14032 -11.09765 -10.88693 -10.76127 -10.61247 -10.54473 -10.30371 -10.15234 -9.95627 -9.05231 -8.96308 -8.38707 -7.88100 -6.08512 -3.81160 0.86345 1.40932 1.44970 1.84948 2.33130 2.89677 3.27763 3.34451 3.38352 3.53176 3.58752 4.08174 4.10904 4.17749 4.49364 4.63967 4.70321 4.72693 4.81821 4.87953 5.01536 5.19802 5.30332 5.33300 5.45981 5.73891 5.91550 6.11297 6.17351 6.27826 6.34774 6.41032 6.86013 6.92838 6.99142 7.22055 7.53920 7.55277 7.71651 8.52186 9.07761 9.44937 10.95402 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.003747 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.587347 B = 7471.803395 C = 8202.643512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.852 5.852 3 C -0.317 4.317 4 H 0.097 0.903 5 C 0.040 3.960 6 N -0.888 5.888 7 Si 0.915 3.085 8 H -0.281 1.281 9 H -0.285 1.285 10 H -0.270 1.270 11 S 2.676 3.324 12 O -0.964 6.964 13 O -0.985 6.985 14 C -0.685 4.685 15 C 0.005 3.995 16 C -0.179 4.179 17 C 0.216 3.784 18 N -0.571 5.571 19 C 0.057 3.943 20 C 0.042 3.958 21 O -0.321 6.321 22 C 0.644 3.356 23 O -0.494 6.494 24 C -0.176 4.176 25 C 0.016 3.984 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.263 0.737 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.161 0.839 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 -12.742 -17.122 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.687 5.687 3 C -0.446 4.446 4 H 0.115 0.885 5 C -0.164 4.164 6 N -0.528 5.528 7 Si 0.743 3.257 8 H -0.207 1.207 9 H -0.211 1.211 10 H -0.194 1.194 11 S 2.765 3.235 12 O -0.954 6.954 13 O -0.975 6.975 14 C -0.769 4.769 15 C -0.015 4.015 16 C -0.201 4.201 17 C 0.124 3.876 18 N -0.307 5.307 19 C -0.066 4.066 20 C -0.033 4.033 21 O -0.231 6.231 22 C 0.399 3.601 23 O -0.377 6.377 24 C -0.197 4.197 25 C -0.004 4.004 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.178 0.822 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.353 -12.760 -16.420 20.798 hybrid contribution -0.071 0.880 -1.088 1.401 sum -0.423 -11.881 -17.508 21.162 Atomic orbital electron populations 1.21116 0.79700 0.97649 1.02505 1.52642 1.12777 1.17963 1.85354 1.19116 0.98927 0.84762 1.41840 0.88528 1.25110 0.96622 0.99092 0.95592 1.70063 1.18176 1.28565 1.35971 0.86117 0.79607 0.82285 0.77725 1.20694 1.21063 1.19428 1.02186 0.73627 0.73198 0.74529 1.93486 1.41298 1.84765 1.75833 1.93476 1.66394 1.61260 1.76338 1.31760 1.03383 1.12237 1.29494 1.20710 0.96761 0.91246 0.92783 1.20706 0.97392 1.06130 0.95841 1.17588 0.95252 0.95157 0.79644 1.45483 1.22040 1.51964 1.11215 1.23028 0.95414 0.97891 0.90229 1.24368 0.83381 0.98159 0.97350 1.87340 1.41989 1.65272 1.28473 1.18466 0.82472 0.79448 0.79726 1.90986 1.36456 1.39212 1.71074 1.21662 1.01333 1.01124 0.95582 1.20884 0.94194 0.92476 0.92815 0.91927 0.91998 0.95944 0.92682 0.83850 0.85201 0.87868 0.87798 0.86978 0.87039 0.82202 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.15 8.60 59.85 0.51 3.66 16 2 N -0.85 -20.90 3.31 -66.69 -0.22 -21.12 16 3 C -0.32 -8.38 9.17 -15.06 -0.14 -8.52 16 4 H 0.10 2.49 7.68 -52.49 -0.40 2.08 16 5 C 0.04 1.06 5.12 -17.43 -0.09 0.98 16 6 N -0.89 -24.19 10.65 55.49 0.59 -23.60 16 7 Si 0.92 20.78 29.57 -169.99 -5.03 15.75 16 8 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 11 S 2.68 59.47 5.60 -107.50 -0.60 58.87 16 12 O -0.96 -23.81 16.37 -57.17 -0.94 -24.75 16 13 O -0.98 -22.53 16.24 -57.17 -0.93 -23.46 16 14 C -0.69 -12.65 5.98 -39.55 -0.24 -12.89 16 15 C 0.00 0.07 9.51 -39.61 -0.38 -0.30 16 16 C -0.18 -2.28 9.49 -39.40 -0.37 -2.66 16 17 C 0.22 3.02 6.63 -83.69 -0.56 2.46 16 18 N -0.57 -6.37 3.16 -118.27 -0.37 -6.74 16 19 C 0.06 0.30 6.49 -3.15 -0.02 0.28 16 20 C 0.04 0.17 8.23 37.73 0.31 0.48 16 21 O -0.32 -3.24 11.09 -37.86 -0.42 -3.66 16 22 C 0.64 8.45 8.77 53.71 0.47 8.92 16 23 O -0.49 -8.35 14.74 -19.11 -0.28 -8.63 16 24 C -0.18 -2.88 9.31 -39.40 -0.37 -3.25 16 25 C 0.02 0.29 9.51 -39.61 -0.38 -0.09 16 26 H 0.06 1.55 7.35 -51.93 -0.38 1.17 16 27 H 0.06 1.45 7.31 -51.93 -0.38 1.07 16 28 H 0.02 0.43 7.61 -51.93 -0.39 0.04 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.14 2.00 7.60 -52.49 -0.40 1.60 16 31 H 0.13 1.12 7.31 -52.49 -0.38 0.74 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.16 2.68 5.24 -52.49 -0.28 2.40 16 37 H 0.15 2.57 7.61 -52.49 -0.40 2.17 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -35.42 327.45 -8.34 -43.76 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -3.84 Total: -0.43 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.24 Total: -10.92 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.00 Total: -51.46 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: -2.57 Total: -60.51 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Atomic # 16 Polarization: 59.47 SS G_CDS: -0.60 Total: 58.87 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.42 -8.34 -43.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273499486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.097 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds