Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38255 * 120.00305 * 2 1 4 4 C 1.38217 * 119.99848 * 180.27467 * 3 2 1 5 5 C 1.50699 * 119.99969 * 179.72046 * 4 3 2 6 6 N 1.46491 * 109.47616 * 270.02412 * 5 4 3 7 7 C 1.34780 * 120.00575 * 179.97438 * 6 5 4 8 8 O 1.21274 * 119.99330 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00334 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47207 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47017 * 180.02562 * 10 9 7 12 12 H 1.07995 * 120.00539 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99544 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00361 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99852 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47115 * 89.99727 * 15 13 11 17 17 H 1.48496 * 109.47140 * 210.00013 * 15 13 11 18 18 H 1.48501 * 109.46859 * 330.00248 * 15 13 11 19 19 C 1.38263 * 120.00085 * 359.74334 * 4 3 2 20 20 C 1.38206 * 120.00107 * 0.02562 * 19 4 3 21 21 C 1.38225 * 119.99833 * 179.76502 * 2 1 3 22 22 S 1.76193 * 119.99855 * 0.02562 * 21 2 1 23 23 N 1.65606 * 107.21910 * 294.72792 * 22 21 2 24 24 O 1.42105 * 106.40403 * 48.26681 * 22 21 2 25 25 O 1.42098 * 106.40145 * 181.18610 * 22 21 2 26 26 H 1.08993 * 109.47378 * 270.23669 * 1 2 3 27 27 H 1.09004 * 109.46624 * 30.23411 * 1 2 3 28 28 H 1.08998 * 109.47077 * 150.23019 * 1 2 3 29 29 H 1.07998 * 120.00221 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.46829 * 30.02598 * 5 4 3 31 31 H 1.09003 * 109.47002 * 150.01869 * 5 4 3 32 32 H 0.96999 * 120.00126 * 359.97438 * 6 5 4 33 33 H 1.09000 * 109.47244 * 300.00699 * 9 7 6 34 34 H 1.09003 * 109.47150 * 60.00212 * 9 7 6 35 35 H 1.09000 * 109.47596 * 300.00491 * 10 9 7 36 36 H 1.09005 * 109.47291 * 60.00392 * 10 9 7 37 37 H 0.97001 * 120.00343 * 180.02562 * 14 13 11 38 38 H 1.07997 * 119.99731 * 179.97438 * 19 4 3 39 39 H 1.07993 * 120.00546 * 179.97438 * 20 19 4 40 40 H 0.97003 * 119.99610 * 270.00212 * 23 22 21 41 41 H 0.96993 * 120.00139 * 89.99542 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0057 5 6 4.3340 2.5022 -0.0121 6 7 4.5720 2.9221 -1.3952 7 6 5.2330 4.0693 -1.6471 8 8 5.6312 4.7538 -0.7286 9 6 5.4783 4.5008 -3.0700 10 6 6.2422 5.8264 -3.0764 11 6 6.4869 6.2583 -4.4993 12 1 6.1327 5.6485 -5.3173 13 6 7.1631 7.4320 -4.7569 14 7 7.5949 8.1743 -3.7609 15 14 7.4659 7.9677 -6.5207 16 1 6.3334 8.8092 -6.9837 17 1 8.7256 8.7509 -6.5908 18 1 7.5793 6.7688 -7.3896 19 6 4.2717 -0.0002 -0.0061 20 6 3.5806 -1.1971 -0.0013 21 6 2.1980 -1.1971 0.0049 22 16 1.3170 -2.7229 0.0105 23 7 0.4982 -2.8110 1.4473 24 8 0.3308 -2.6206 -1.0076 25 8 2.2966 -3.7517 0.0431 26 1 -0.3634 0.0042 1.0276 27 1 -0.3633 0.8879 -0.5175 28 1 -0.3633 -0.8920 -0.5102 29 1 1.6584 2.1326 -0.0004 30 1 3.7472 3.2630 0.5027 31 1 5.2887 2.3730 0.4978 32 1 4.2538 2.3744 -2.1299 33 1 6.0656 3.7401 -3.5843 34 1 4.5238 4.6295 -3.5804 35 1 5.6545 6.5870 -2.5622 36 1 7.1967 5.6983 -2.5660 37 1 8.0702 9.0002 -3.9421 38 1 5.3516 -0.0003 -0.0110 39 1 4.1204 -2.1324 -0.0020 40 1 0.9192 -3.2170 2.2212 41 1 -0.4021 -2.4566 1.5150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291987305.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = -103.623345 kcal Electronic energy + Delta-G solvation = -24337.397679 eV Core-core repulsion = 20536.566276 eV Total energy + Delta-G solvation = -3800.831403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20883 -39.01217 -37.78776 -36.35032 -35.21759 -33.89216 -33.47276 -33.02184 -31.88371 -30.86617 -27.59161 -27.11443 -25.24164 -22.89422 -21.90806 -21.28239 -20.04965 -19.71442 -18.33528 -18.01024 -17.58240 -17.02846 -16.33404 -16.12419 -15.69947 -15.23762 -15.02802 -14.88761 -14.61663 -14.45429 -14.34985 -13.71825 -13.35970 -13.15884 -13.05358 -12.68958 -12.64526 -12.56343 -12.39036 -12.17342 -12.09042 -12.00982 -11.60125 -11.34731 -11.18629 -10.93920 -10.76903 -10.61034 -9.98465 -9.85826 -9.68309 -9.25211 -9.18535 -9.01822 -8.91801 -8.33570 -5.97610 -4.02076 -0.07127 0.30454 0.86185 2.62274 2.95603 3.17483 3.30362 3.32594 3.38694 3.41363 3.66986 3.88988 4.14345 4.27240 4.36072 4.46594 4.78622 4.83001 4.96328 5.01696 5.19956 5.24281 5.36273 5.37380 5.41027 5.50704 5.64639 5.69148 5.73773 5.79532 6.07945 6.19389 6.21028 6.39808 6.52842 6.56577 6.85706 7.72344 7.78057 7.83491 8.04980 8.36477 8.69208 9.06280 9.61573 11.13295 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.027683 B = 0.001975 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.209113 B =14175.963600 C =14414.917301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.017 3.983 3 C -0.125 4.125 4 C -0.039 4.039 5 C 0.151 3.849 6 N -0.741 5.741 7 C 0.511 3.489 8 O -0.533 6.533 9 C -0.129 4.129 10 C 0.037 3.963 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.129 4.129 20 C -0.019 4.019 21 C -0.684 4.684 22 S 2.707 3.293 23 N -1.243 6.243 24 O -0.954 6.954 25 O -0.959 6.959 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.135 0.865 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.399 0.601 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.422 0.578 41 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.743 -24.025 13.026 32.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 C -0.145 4.145 4 C -0.040 4.040 5 C 0.028 3.972 6 N -0.396 5.396 7 C 0.300 3.700 8 O -0.408 6.408 9 C -0.169 4.169 10 C -0.001 4.001 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.148 4.148 20 C -0.038 4.038 21 C -0.771 4.771 22 S 2.794 3.206 23 N -0.915 5.915 24 O -0.944 6.944 25 O -0.949 6.949 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.233 0.767 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.251 0.749 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -16.241 -23.938 12.916 31.680 hybrid contribution 0.177 0.900 -0.569 1.080 sum -16.063 -23.038 12.347 30.680 Atomic orbital electron populations 1.21658 0.90453 1.07183 1.03897 1.19511 0.95766 0.91746 0.91379 1.21172 0.93626 0.98120 1.01541 1.20343 0.93988 0.95273 0.94347 1.20231 0.99663 0.91689 0.85648 1.46246 1.60832 1.25571 1.06968 1.21634 0.75851 0.79076 0.93452 1.90676 1.49677 1.53195 1.47203 1.21878 1.02631 1.02633 0.89781 1.18905 0.95418 0.88909 0.96832 1.21218 1.36534 1.06646 0.92183 0.92581 1.25032 0.95703 0.96623 0.97064 1.69993 1.38131 1.13986 1.30722 0.86579 0.77651 0.78672 0.84974 1.20665 1.21216 1.19879 1.21280 1.00797 0.91580 1.01146 1.20961 0.91808 0.99470 0.91573 1.30776 1.06415 1.19609 1.20283 1.01465 0.73164 0.73369 0.72648 1.53341 1.29050 1.77382 1.31706 1.93571 1.59148 1.86752 1.54952 1.93595 1.61228 1.54028 1.86064 0.89732 0.89312 0.87821 0.84689 0.90445 0.90368 0.76689 0.90128 0.90153 0.95825 0.95798 0.92935 0.84559 0.83668 0.74947 0.75113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.42 36.00 0.34 -0.67 16 2 C 0.02 0.14 5.87 -104.62 -0.61 -0.48 16 3 C -0.13 -1.09 9.36 -39.58 -0.37 -1.46 16 4 C -0.04 -0.37 5.25 -104.62 -0.55 -0.92 16 5 C 0.15 1.76 5.80 -5.20 -0.03 1.73 16 6 N -0.74 -10.00 5.55 -61.48 -0.34 -10.34 16 7 C 0.51 9.57 7.83 -10.99 -0.09 9.48 16 8 O -0.53 -12.27 15.98 5.56 0.09 -12.18 16 9 C -0.13 -2.59 5.64 -27.89 -0.16 -2.75 16 10 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 11 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.39 13.29 55.43 0.74 -26.66 16 15 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.13 -1.14 9.70 -39.58 -0.38 -1.52 16 20 C -0.02 -0.16 9.55 -39.58 -0.38 -0.54 16 21 C -0.68 -5.55 5.91 -39.58 -0.23 -5.79 16 22 S 2.71 19.55 5.59 -107.50 -0.60 18.95 16 23 N -1.24 -3.63 9.39 60.35 0.57 -3.07 16 24 O -0.95 -9.43 15.36 -57.17 -0.88 -10.31 16 25 O -0.96 -9.67 16.97 -57.17 -0.97 -10.64 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.10 0.65 4.83 -51.93 -0.25 0.40 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.40 4.44 8.46 -40.82 -0.35 4.10 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.15 1.04 7.33 -52.49 -0.38 0.66 16 40 H 0.42 0.49 8.96 -34.47 -0.31 0.18 16 41 H 0.42 0.42 8.96 -34.47 -0.31 0.11 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -38.88 361.74 -9.32 -48.20 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.36 Total: -0.34 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.99 Total: -15.72 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.96 Total: -40.06 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.76 Total: -33.13 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 19.55 SS G_CDS: -0.60 Total: 18.95 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.88 -9.32 -48.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291987305.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.427 kcal (2) G-P(sol) polarization free energy of solvation -38.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds