Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48503 * 109.46671 * 269.99583 * 3 2 1 5 5 H 1.48495 * 109.47393 * 29.99554 * 3 2 1 6 6 H 1.48500 * 109.46891 * 150.00008 * 3 2 1 7 7 C 1.38817 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99662 * 158.11287 * 7 2 1 9 9 N 1.36932 * 120.00578 * 338.12040 * 7 2 1 10 10 C 1.46504 * 119.99601 * 324.72396 * 9 7 2 11 11 C 1.52995 * 109.47280 * 270.00061 * 10 9 7 12 12 O 1.42902 * 109.47306 * 64.99876 * 11 10 9 13 13 C 1.35893 * 116.99793 * 180.02562 * 12 11 10 14 14 C 1.38724 * 120.06038 * 359.72722 * 13 12 11 15 15 C 1.38152 * 119.94831 * 179.77254 * 14 13 12 16 16 C 1.38267 * 120.04870 * 0.49869 * 15 14 13 17 17 S 1.76200 * 119.94019 * 179.72600 * 16 15 14 18 18 N 1.65600 * 107.21821 * 270.02643 * 17 16 15 19 19 O 1.42106 * 106.40319 * 23.56686 * 17 16 15 20 20 O 1.42098 * 106.40244 * 156.48410 * 17 16 15 21 21 C 1.38257 * 120.11651 * 359.75188 * 16 15 14 22 22 C 1.38151 * 120.05722 * 359.97438 * 21 16 15 23 23 C 1.46494 * 120.00231 * 144.72279 * 9 7 2 24 24 C 1.53004 * 117.49920 * 3.23785 * 23 9 7 25 25 C 1.53004 * 117.49887 * 294.57646 * 23 9 7 26 26 H 0.97004 * 120.00009 * 356.05903 * 1 2 3 27 27 H 1.09000 * 109.46750 * 149.99524 * 10 9 7 28 28 H 1.09006 * 109.46882 * 30.00018 * 10 9 7 29 29 H 1.09006 * 109.47034 * 304.99915 * 11 10 9 30 30 H 1.08995 * 109.47427 * 185.00124 * 11 10 9 31 31 H 1.07999 * 120.02866 * 359.97438 * 14 13 12 32 32 H 1.07997 * 119.97222 * 180.25196 * 15 14 13 33 33 H 0.96998 * 120.00410 * 359.97438 * 18 17 16 34 34 H 0.97006 * 119.99867 * 180.02562 * 18 17 16 35 35 H 1.08003 * 119.97639 * 179.97438 * 21 16 15 36 36 H 1.07993 * 120.02953 * 179.97438 * 22 21 16 37 37 H 1.09000 * 115.54996 * 148.91087 * 23 9 7 38 38 H 1.08992 * 117.49680 * 0.02562 * 24 23 9 39 39 H 1.09005 * 117.49294 * 145.02012 * 24 23 9 40 40 H 1.08999 * 117.49869 * 214.97628 * 25 23 9 41 41 H 1.09002 * 117.49815 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0318 -1.2361 -0.3481 9 7 1.3995 -2.3452 0.4429 10 6 0.4446 -2.2832 1.5523 11 6 1.1877 -2.4732 2.8761 12 8 2.0798 -1.3763 3.0834 13 6 2.8218 -1.3912 4.2218 14 6 2.6899 -2.4370 5.1236 15 6 3.4488 -2.4522 6.2779 16 6 4.3318 -1.4209 6.5396 17 16 5.2930 -1.4395 8.0162 18 7 4.4155 -0.6570 9.1823 19 8 5.3782 -2.7986 8.4224 20 8 6.4339 -0.6313 7.7625 21 6 4.4614 -0.3748 5.6450 22 6 3.7089 -0.3577 4.4865 23 6 1.7010 -3.6300 -0.1930 24 6 2.7624 -3.6410 -1.2950 25 6 1.2839 -3.8103 -1.6540 26 1 -0.4850 0.8381 0.0577 27 1 -0.2987 -3.0719 1.4363 28 1 -0.0519 -1.3128 1.5504 29 1 1.7562 -3.4027 2.8435 30 1 0.4683 -2.5159 3.6938 31 1 1.9969 -3.2404 4.9219 32 1 3.3494 -3.2683 6.9782 33 1 3.5409 -0.2951 8.9701 34 1 4.7764 -0.5598 10.0775 35 1 5.1515 0.4299 5.8519 36 1 3.8101 0.4598 3.7882 37 1 1.6427 -4.5021 0.4583 38 1 3.2365 -2.6924 -1.5465 39 1 3.4020 -4.5205 -1.3689 40 1 0.9516 -4.8010 -1.9640 41 1 0.7848 -2.9730 -2.1419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299524621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = -33.377329 kcal Electronic energy + Delta-G solvation = -25539.686638 eV Core-core repulsion = 21741.901331 eV Total energy + Delta-G solvation = -3797.785307 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.96723 -37.59374 -37.18379 -36.77294 -35.87260 -33.64247 -33.34901 -31.45040 -31.00573 -30.03478 -28.09965 -24.64120 -23.21581 -22.84392 -21.58267 -21.21707 -19.78442 -19.59358 -18.56705 -17.79310 -17.47661 -16.61360 -16.10475 -16.01585 -15.51655 -15.38006 -15.05908 -14.67144 -14.52996 -13.88830 -13.56082 -13.46210 -13.05844 -12.96757 -12.43455 -12.25042 -12.15183 -12.12345 -12.02244 -11.86904 -11.35816 -11.03931 -10.94171 -10.89574 -10.71795 -10.66978 -10.64290 -10.27475 -10.20582 -9.83865 -9.69395 -9.35609 -9.13342 -8.50214 -8.37139 -6.66097 -5.85392 -3.43555 0.35799 0.94730 1.29252 3.04787 3.32690 3.40523 3.41581 3.45261 3.57276 3.73718 4.41926 4.46268 4.75291 4.85251 4.86406 5.07911 5.18078 5.31172 5.42829 5.53096 5.62362 5.74796 5.78322 5.82606 5.89128 5.94103 6.00225 6.08865 6.14824 6.21710 6.37829 6.43925 6.47309 6.56594 6.72971 6.80739 6.96374 7.15606 7.41202 7.73941 7.77084 8.40857 9.06842 9.71096 10.24011 11.13071 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.003282 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.854381 B = 8528.051015 C = 9323.632233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.017 3.983 3 Si 0.894 3.106 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.547 5.547 10 C 0.140 3.860 11 C 0.038 3.962 12 O -0.261 6.261 13 C 0.206 3.794 14 C -0.240 4.240 15 C 0.022 3.978 16 C -0.731 4.731 17 S 2.708 3.292 18 N -1.253 6.253 19 O -0.972 6.972 20 O -0.971 6.971 21 C 0.017 3.983 22 C -0.179 4.179 23 C 0.116 3.884 24 C -0.194 4.194 25 C -0.220 4.220 26 H 0.254 0.746 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.417 0.583 34 H 0.417 0.583 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -3.102 15.025 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.182 4.182 3 Si 0.724 3.276 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.374 4.374 8 H 0.082 0.918 9 N -0.263 5.263 10 C 0.013 3.987 11 C -0.040 4.040 12 O -0.170 6.170 13 C 0.156 3.844 14 C -0.260 4.260 15 C 0.002 3.998 16 C -0.821 4.821 17 S 2.799 3.201 18 N -0.927 5.927 19 O -0.962 6.962 20 O -0.960 6.960 21 C -0.002 4.002 22 C -0.199 4.199 23 C 0.007 3.993 24 C -0.232 4.232 25 C -0.261 4.261 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.130 0.870 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.243 0.757 34 H 0.246 0.754 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.856 -3.280 14.772 15.615 hybrid contribution -0.516 0.946 -0.181 1.093 sum 3.340 -2.333 14.591 15.149 Atomic orbital electron populations 1.69996 1.05557 1.26058 1.51558 1.25011 0.94876 0.98592 0.99766 0.86442 0.79784 0.83704 0.77705 1.21461 1.21477 1.20140 1.18929 0.94087 0.85222 1.39144 0.91829 1.43360 1.48546 1.01768 1.32662 1.21149 0.90584 1.04762 0.82163 1.24115 0.91049 0.87391 1.01425 1.86546 1.50444 1.45789 1.34221 1.19738 0.87709 0.91856 0.85102 1.21417 1.06128 1.01269 0.97203 1.20645 0.89329 0.94351 0.95464 1.30034 1.22358 1.06634 1.23090 1.01171 0.72787 0.73343 0.72826 1.53135 1.34173 1.78376 1.26993 1.93578 1.85725 1.35063 1.81783 1.93583 1.47558 1.69830 1.85029 1.20675 0.93614 0.94774 0.91145 1.20651 0.99265 1.00346 0.99601 1.21247 1.00825 0.90048 0.87173 1.23029 0.91930 1.01935 1.06345 1.23367 0.97399 1.00701 1.04594 0.93577 0.92717 0.86955 0.93159 0.93317 0.84557 0.84343 0.75660 0.75380 0.83904 0.84125 0.89723 0.88415 0.90766 0.91210 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.19 11.33 55.49 0.63 -23.56 16 2 C 0.02 0.45 4.97 -17.43 -0.09 0.37 16 3 Si 0.89 21.10 29.61 -169.99 -5.03 16.07 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.24 -6.29 8.13 -15.06 -0.12 -6.41 16 8 H 0.06 1.68 6.56 -52.48 -0.34 1.34 16 9 N -0.55 -12.62 2.76 -165.66 -0.46 -13.07 16 10 C 0.14 2.94 5.76 -4.04 -0.02 2.91 16 11 C 0.04 0.66 5.08 37.16 0.19 0.85 16 12 O -0.26 -5.12 9.61 -19.40 -0.19 -5.31 16 13 C 0.21 3.43 6.69 -39.22 -0.26 3.17 16 14 C -0.24 -3.36 9.04 -39.43 -0.36 -3.71 16 15 C 0.02 0.27 9.52 -39.60 -0.38 -0.11 16 16 C -0.73 -8.89 5.94 -39.56 -0.24 -9.13 16 17 S 2.71 29.06 6.28 -107.50 -0.68 28.38 16 18 N -1.25 -8.14 9.55 60.35 0.58 -7.56 16 19 O -0.97 -13.21 17.28 -57.17 -0.99 -14.20 16 20 O -0.97 -13.43 17.28 -57.17 -0.99 -14.42 16 21 C 0.02 0.23 9.51 -39.61 -0.38 -0.15 16 22 C -0.18 -2.78 9.99 -39.43 -0.39 -3.18 16 23 C 0.12 2.34 6.56 -67.93 -0.45 1.90 16 24 C -0.19 -3.72 9.80 -26.69 -0.26 -3.99 16 25 C -0.22 -4.29 10.36 -26.69 -0.28 -4.57 16 26 H 0.25 6.74 8.32 -40.82 -0.34 6.40 16 27 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 28 H 0.11 2.72 5.36 -51.93 -0.28 2.45 16 29 H 0.05 0.83 7.67 -51.93 -0.40 0.43 16 30 H 0.05 0.72 7.65 -51.93 -0.40 0.32 16 31 H 0.14 1.68 6.30 -52.49 -0.33 1.34 16 32 H 0.14 1.41 7.61 -52.49 -0.40 1.01 16 33 H 0.42 1.90 8.92 -34.47 -0.31 1.60 16 34 H 0.42 1.94 8.96 -34.47 -0.31 1.63 16 35 H 0.14 1.58 7.61 -52.48 -0.40 1.18 16 36 H 0.14 2.21 8.06 -52.49 -0.42 1.78 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.10 2.07 6.37 -51.93 -0.33 1.73 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -33.17 356.40 -9.94 -43.12 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.16 Total: 7.22 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -3.03 Total: -22.04 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.75 Total: -44.20 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -2.16 Total: -33.93 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: 29.06 SS G_CDS: -0.68 Total: 28.38 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.17 -9.94 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299524621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.740 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds