Wall clock time and date at job start Tue Mar 31 2020 05:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48503 * 109.46671 * 269.99583 * 3 2 1 5 5 H 1.48495 * 109.47393 * 29.99554 * 3 2 1 6 6 H 1.48500 * 109.46891 * 150.00008 * 3 2 1 7 7 C 1.38817 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99662 * 158.11287 * 7 2 1 9 9 N 1.36932 * 120.00578 * 338.12040 * 7 2 1 10 10 C 1.46504 * 119.99601 * 324.72396 * 9 7 2 11 11 C 1.52995 * 109.47280 * 270.00061 * 10 9 7 12 12 O 1.42902 * 109.47306 * 64.99876 * 11 10 9 13 13 C 1.35893 * 116.99793 * 180.02562 * 12 11 10 14 14 C 1.38724 * 120.06038 * 359.72722 * 13 12 11 15 15 C 1.38152 * 119.94831 * 179.77254 * 14 13 12 16 16 C 1.38267 * 120.04870 * 0.49869 * 15 14 13 17 17 S 1.76200 * 119.94019 * 179.72600 * 16 15 14 18 18 N 1.65600 * 107.21821 * 270.02643 * 17 16 15 19 19 O 1.42106 * 106.40319 * 23.56686 * 17 16 15 20 20 O 1.42098 * 106.40244 * 156.48410 * 17 16 15 21 21 C 1.38257 * 120.11651 * 359.75188 * 16 15 14 22 22 C 1.38151 * 120.05722 * 359.97438 * 21 16 15 23 23 C 1.46494 * 120.00231 * 144.72279 * 9 7 2 24 24 C 1.53004 * 117.49920 * 3.23785 * 23 9 7 25 25 C 1.53004 * 117.49887 * 294.57646 * 23 9 7 26 26 H 0.97004 * 120.00009 * 356.05903 * 1 2 3 27 27 H 1.09000 * 109.46750 * 149.99524 * 10 9 7 28 28 H 1.09006 * 109.46882 * 30.00018 * 10 9 7 29 29 H 1.09006 * 109.47034 * 304.99915 * 11 10 9 30 30 H 1.08995 * 109.47427 * 185.00124 * 11 10 9 31 31 H 1.07999 * 120.02866 * 359.97438 * 14 13 12 32 32 H 1.07997 * 119.97222 * 180.25196 * 15 14 13 33 33 H 0.96998 * 120.00410 * 359.97438 * 18 17 16 34 34 H 0.97006 * 119.99867 * 180.02562 * 18 17 16 35 35 H 1.08003 * 119.97639 * 179.97438 * 21 16 15 36 36 H 1.07993 * 120.02953 * 179.97438 * 22 21 16 37 37 H 1.09000 * 115.54996 * 148.91087 * 23 9 7 38 38 H 1.08992 * 117.49680 * 0.02562 * 24 23 9 39 39 H 1.09005 * 117.49294 * 145.02012 * 24 23 9 40 40 H 1.08999 * 117.49869 * 214.97628 * 25 23 9 41 41 H 1.09002 * 117.49815 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0318 -1.2361 -0.3481 9 7 1.3995 -2.3452 0.4429 10 6 0.4446 -2.2832 1.5523 11 6 1.1877 -2.4732 2.8761 12 8 2.0798 -1.3763 3.0834 13 6 2.8218 -1.3912 4.2218 14 6 2.6899 -2.4370 5.1236 15 6 3.4488 -2.4522 6.2779 16 6 4.3318 -1.4209 6.5396 17 16 5.2930 -1.4395 8.0162 18 7 4.4155 -0.6570 9.1823 19 8 5.3782 -2.7986 8.4224 20 8 6.4339 -0.6313 7.7625 21 6 4.4614 -0.3748 5.6450 22 6 3.7089 -0.3577 4.4865 23 6 1.7010 -3.6300 -0.1930 24 6 2.7624 -3.6410 -1.2950 25 6 1.2839 -3.8103 -1.6540 26 1 -0.4850 0.8381 0.0577 27 1 -0.2987 -3.0719 1.4363 28 1 -0.0519 -1.3128 1.5504 29 1 1.7562 -3.4027 2.8435 30 1 0.4683 -2.5159 3.6938 31 1 1.9969 -3.2404 4.9219 32 1 3.3494 -3.2683 6.9782 33 1 3.5409 -0.2951 8.9701 34 1 4.7764 -0.5598 10.0775 35 1 5.1515 0.4299 5.8519 36 1 3.8101 0.4598 3.7882 37 1 1.6427 -4.5021 0.4583 38 1 3.2365 -2.6924 -1.5465 39 1 3.4020 -4.5205 -1.3689 40 1 0.9516 -4.8010 -1.9640 41 1 0.7848 -2.9730 -2.1419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299524621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:43 Heat of formation + Delta-G solvation = -57.507394 kcal Electronic energy + Delta-G solvation = -25540.732996 eV Core-core repulsion = 21741.901331 eV Total energy + Delta-G solvation = -3798.831665 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16048 -39.00841 -38.21273 -38.17348 -36.86782 -35.35501 -33.98593 -33.08929 -32.18609 -31.28032 -29.67887 -26.41108 -24.53270 -23.95839 -23.07937 -22.64498 -21.46071 -20.48701 -19.55430 -18.89205 -18.34492 -18.27799 -17.33333 -17.07890 -16.90405 -16.78368 -16.22781 -16.16120 -15.75237 -15.61767 -14.71946 -14.63268 -14.45663 -14.25710 -13.86475 -13.61271 -13.48145 -13.16807 -13.14946 -13.05842 -13.01503 -12.65652 -12.60161 -12.37060 -12.07068 -12.01354 -11.92062 -11.75698 -11.53895 -11.38096 -11.29474 -10.90945 -10.44034 -10.18939 -9.56089 -8.52717 -7.79589 -5.40849 -0.53730 -0.13011 0.22143 1.40440 1.44701 1.53409 2.18043 2.33554 2.42826 2.51125 2.81615 3.17527 3.42804 3.45927 3.49516 3.74349 3.85986 4.14610 4.24531 4.29417 4.37500 4.43198 4.46186 4.51323 4.57271 4.65042 4.82477 4.88257 4.93226 4.97997 5.01854 5.06916 5.24131 5.32523 5.35061 5.53908 5.62568 5.68253 5.76491 6.38913 6.41495 6.55719 7.17180 7.86646 8.33562 9.13036 Molecular weight = 326.11amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.003282 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.854381 B = 8528.051015 C = 9323.632233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.024 4.024 3 Si 0.937 3.063 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.049 0.951 9 N -0.564 5.564 10 C 0.137 3.863 11 C 0.047 3.953 12 O -0.300 6.300 13 C 0.178 3.822 14 C -0.238 4.238 15 C 0.023 3.977 16 C -0.725 4.725 17 S 2.740 3.260 18 N -1.235 6.235 19 O -0.996 6.996 20 O -1.000 7.000 21 C 0.020 3.980 22 C -0.200 4.200 23 C 0.101 3.899 24 C -0.187 4.187 25 C -0.214 4.214 26 H 0.249 0.751 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.429 0.571 34 H 0.429 0.571 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 -4.766 17.201 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.767 3.233 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.368 4.368 8 H 0.067 0.933 9 N -0.281 5.281 10 C 0.011 3.989 11 C -0.030 4.030 12 O -0.211 6.211 13 C 0.129 3.871 14 C -0.258 4.258 15 C 0.004 3.996 16 C -0.813 4.813 17 S 2.830 3.170 18 N -0.915 5.915 19 O -0.985 6.985 20 O -0.989 6.989 21 C 0.001 3.999 22 C -0.220 4.220 23 C -0.007 4.007 24 C -0.225 4.225 25 C -0.255 4.255 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.259 0.741 34 H 0.262 0.738 35 H 0.179 0.821 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.481 -4.953 16.956 18.225 hybrid contribution -0.652 1.420 -0.758 1.736 sum 3.829 -3.533 16.199 17.016 Atomic orbital electron populations 1.70099 1.06341 1.25951 1.53504 1.25449 0.95358 1.00500 1.00760 0.85760 0.78867 0.81473 0.77240 1.21723 1.21649 1.20102 1.18934 0.93502 0.86567 1.37770 0.93295 1.43537 1.48775 1.02041 1.33771 1.21095 0.90900 1.03426 0.83484 1.23862 0.91452 0.87416 1.00231 1.86457 1.51666 1.46841 1.36161 1.19944 0.88480 0.93423 0.85219 1.21605 1.06474 1.00755 0.96931 1.21001 0.88445 0.94876 0.95251 1.30299 1.21616 1.05972 1.23417 1.00126 0.72003 0.72591 0.72323 1.52681 1.34426 1.77709 1.26672 1.93554 1.86116 1.36849 1.81988 1.93555 1.49442 1.70395 1.85525 1.20875 0.93175 0.95605 0.90283 1.20732 1.00370 1.00329 1.00564 1.21577 1.01460 0.89777 0.87836 1.23025 0.92016 1.02048 1.05441 1.23275 0.97465 1.00971 1.03802 0.94165 0.91166 0.90443 0.91842 0.90466 0.82813 0.81637 0.74141 0.73828 0.82121 0.85532 0.86555 0.91157 0.87305 0.87861 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.55 11.33 21.65 0.25 -51.30 16 2 C -0.02 -1.29 4.97 84.86 0.42 -0.87 16 3 Si 0.94 44.83 29.61 68.60 2.03 46.86 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.24 -12.53 8.13 84.04 0.68 -11.85 16 8 H 0.05 2.68 6.56 -2.91 -0.02 2.66 16 9 N -0.56 -26.15 2.76 -678.02 -1.87 -28.02 16 10 C 0.14 5.74 5.76 86.38 0.50 6.24 16 11 C 0.05 1.60 5.08 71.98 0.37 1.96 16 12 O -0.30 -11.91 9.61 -92.35 -0.89 -12.80 16 13 C 0.18 5.87 6.69 22.51 0.15 6.02 16 14 C -0.24 -6.16 9.04 22.37 0.20 -5.96 16 15 C 0.02 0.51 9.52 22.26 0.21 0.72 16 16 C -0.72 -15.94 5.94 22.28 0.13 -15.81 16 17 S 2.74 51.74 6.28 -56.49 -0.35 51.39 16 18 N -1.23 -12.15 9.55 37.02 0.35 -11.80 16 19 O -1.00 -24.31 17.28 -128.00 -2.21 -26.53 16 20 O -1.00 -25.61 17.28 -128.00 -2.21 -27.82 16 21 C 0.02 0.49 9.51 22.25 0.21 0.70 16 22 C -0.20 -6.26 9.99 22.37 0.22 -6.04 16 23 C 0.10 3.96 6.56 45.00 0.30 4.26 16 24 C -0.19 -6.95 9.80 30.62 0.30 -6.65 16 25 C -0.21 -8.15 10.36 30.62 0.32 -7.83 16 26 H 0.25 13.74 8.32 -92.70 -0.77 12.97 16 27 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 28 H 0.08 3.87 5.36 -2.38 -0.01 3.86 16 29 H 0.06 1.96 7.67 -2.38 -0.02 1.94 16 30 H 0.08 2.13 7.65 -2.39 -0.02 2.11 16 31 H 0.15 3.33 6.30 -2.91 -0.02 3.31 16 32 H 0.17 2.73 7.61 -2.91 -0.02 2.71 16 33 H 0.43 2.48 8.92 -96.74 -0.86 1.62 16 34 H 0.43 2.60 8.96 -96.74 -0.87 1.73 16 35 H 0.16 3.33 7.61 -2.91 -0.02 3.31 16 36 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 37 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.07 3.00 6.37 -2.39 -0.02 2.99 16 39 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 40 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.05 2.49 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -73.40 356.40 -1.54 -74.94 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.65 Total: 20.16 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 4.01 Total: -35.08 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -1.27 Total: -91.12 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -5.31 Total: -67.14 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 51.74 SS G_CDS: -0.35 Total: 51.39 kcal Total: -73.40 -1.54 -74.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299524621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.436 kcal (2) G-P(sol) polarization free energy of solvation -73.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds