Wall clock time and date at job start Tue Mar 31 2020 04:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35989 * 116.99611 * 2 1 4 4 C 1.38718 * 120.00208 * 359.97438 * 3 2 1 5 5 C 1.38103 * 120.00119 * 179.97438 * 4 3 2 6 6 C 1.38718 * 120.00115 * 0.02562 * 5 4 3 7 7 O 1.35977 * 120.00237 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99919 * 0.02562 * 7 6 5 9 9 C 1.38679 * 120.00055 * 0.02562 * 6 5 4 10 10 S 1.76197 * 120.00056 * 179.97438 * 9 6 5 11 11 O 1.42103 * 106.39942 * 181.45910 * 10 9 6 12 12 O 1.42098 * 106.40317 * 48.54263 * 10 9 6 13 13 N 1.65593 * 107.22118 * 295.00156 * 10 9 6 14 14 C 1.36936 * 120.00115 * 89.99939 * 13 10 9 15 15 H 1.07995 * 120.00086 * 6.72133 * 14 13 10 16 16 C 1.38820 * 119.99968 * 186.71593 * 14 13 10 17 17 N 1.31621 * 119.99996 * 24.09231 * 16 14 13 18 18 Si 1.86796 * 119.99805 * 204.09008 * 16 14 13 19 19 H 1.48504 * 109.46927 * 84.91474 * 18 16 14 20 20 H 1.48502 * 109.46852 * 204.90781 * 18 16 14 21 21 H 1.48497 * 109.47450 * 324.91171 * 18 16 14 22 22 C 1.46505 * 119.99955 * 270.00127 * 13 10 9 23 23 C 1.47197 * 109.47324 * 93.37128 * 22 13 10 24 24 N 5.47601 * 122.35498 * 299.26576 * 2 1 3 25 25 C 1.38156 * 119.99824 * 0.23487 * 9 6 5 26 26 H 1.08997 * 109.47168 * 299.99925 * 1 2 3 27 27 H 1.08998 * 109.46941 * 60.00330 * 1 2 3 28 28 H 1.09005 * 109.46615 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99637 * 359.97438 * 4 3 2 30 30 H 1.08005 * 120.00164 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47212 * 299.99512 * 8 7 6 32 32 H 1.08993 * 109.47156 * 59.99771 * 8 7 6 33 33 H 1.09000 * 109.47006 * 179.97438 * 8 7 6 34 34 H 0.96993 * 119.99855 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47089 * 213.38102 * 22 13 10 36 36 H 1.09005 * 109.46793 * 333.37525 * 22 13 10 37 37 H 1.07993 * 119.99933 * 179.72610 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3751 -0.0005 5 6 1.9177 3.6056 0.0000 6 6 3.3030 3.6783 0.0005 7 8 3.9202 4.8899 0.0005 8 6 3.0802 6.0460 0.0005 9 6 4.0584 2.5153 0.0000 10 16 5.8179 2.6077 0.0000 11 8 6.2900 1.2678 -0.0353 12 8 6.1714 3.5295 1.0220 13 7 6.2724 3.3016 -1.4332 14 6 6.4040 4.6615 -1.5241 15 1 6.3182 5.2728 -0.6379 16 6 6.6479 5.2545 -2.7554 17 7 6.2955 4.6385 -3.8638 18 14 7.4761 6.9268 -2.8390 19 1 8.9500 6.7522 -2.7890 20 1 7.1004 7.6023 -4.1070 21 1 7.0363 7.7551 -1.6876 22 6 6.5337 2.4604 -2.6039 23 6 5.3081 2.3492 -3.4116 24 7 4.3596 2.2614 -4.0354 25 6 3.4312 1.2843 -0.0060 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2122 2.3184 -0.0014 30 1 1.3294 4.5114 -0.0008 31 1 2.4510 6.0379 -0.8895 32 1 2.4510 6.0379 0.8904 33 1 3.6980 6.9440 0.0010 34 1 6.4662 5.0526 -4.7241 35 1 7.3252 2.9091 -3.2043 36 1 6.8442 1.4682 -2.2764 37 1 4.0195 0.3787 -0.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342422442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:08 Heat of formation + Delta-G solvation = -64.614418 kcal Electronic energy + Delta-G solvation = -26927.574089 eV Core-core repulsion = 22992.601145 eV Total energy + Delta-G solvation = -3934.972944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.06503 -38.67319 -36.64592 -36.10707 -35.70478 -34.48814 -34.34768 -31.67792 -31.02886 -29.43630 -27.45969 -27.21382 -26.62838 -24.06498 -22.62846 -21.71711 -18.86718 -18.42822 -17.81915 -17.32989 -16.79544 -16.38741 -16.12809 -15.63056 -15.24876 -15.19627 -14.66081 -14.50123 -14.41008 -13.96766 -13.62240 -13.12944 -12.88993 -12.61462 -12.50419 -12.34387 -12.19078 -11.75793 -11.45848 -11.41203 -11.38549 -11.30002 -11.03906 -10.95596 -10.80758 -10.74429 -10.56605 -10.23677 -10.15025 -10.06678 -9.89258 -9.55563 -8.96174 -8.44021 -7.45437 -6.70762 -4.00775 1.22784 1.65410 1.79654 3.07438 3.14630 3.18536 3.45010 3.64657 3.75001 3.91740 3.98425 4.17974 4.54979 4.64270 4.86592 4.96894 5.02832 5.12561 5.15375 5.29689 5.40022 5.41830 5.45080 5.49327 5.71572 5.80495 5.86496 6.02575 6.14056 6.35940 6.38409 6.51274 6.56279 6.78170 6.98971 7.25082 7.51586 7.76526 8.15162 8.51663 8.92020 8.94328 10.28798 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.005754 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.892522 B = 4865.258061 C = 5136.383715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.059 3.941 4 C -0.133 4.133 5 C -0.198 4.198 6 C 0.194 3.806 7 O -0.284 6.284 8 C 0.030 3.970 9 C -0.660 4.660 10 S 2.546 3.454 11 O -0.996 6.996 12 O -0.965 6.965 13 N -0.795 5.795 14 C -0.224 4.224 15 H 0.132 0.868 16 C 0.026 3.974 17 N -0.842 5.842 18 Si 0.935 3.065 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.224 3.776 23 C 0.245 3.755 24 N -0.481 5.481 25 C -0.025 4.025 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.279 0.721 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 -0.041 4.011 7.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.014 3.986 4 C -0.152 4.152 5 C -0.218 4.218 6 C 0.146 3.854 7 O -0.195 6.195 8 C -0.065 4.065 9 C -0.737 4.737 10 S 2.643 3.357 11 O -0.986 6.986 12 O -0.954 6.954 13 N -0.618 5.618 14 C -0.371 4.371 15 H 0.150 0.850 16 C -0.185 4.185 17 N -0.483 5.483 18 Si 0.761 3.239 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.189 1.189 22 C 0.095 3.905 23 C -0.074 4.074 24 N -0.162 5.162 25 C -0.044 4.044 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.039 -0.780 3.777 8.026 hybrid contribution -1.156 1.279 -0.366 1.762 sum -8.194 0.500 3.411 8.890 Atomic orbital electron populations 1.22965 0.79312 1.03477 1.00866 1.86077 1.20574 1.26761 1.89886 1.18945 0.92511 0.84020 1.03129 1.21048 0.99408 0.92001 1.02783 1.21041 0.93640 0.98143 1.08934 1.18248 0.90337 0.85161 0.91634 1.86353 1.34488 1.11540 1.87165 1.23022 0.95850 0.87243 1.00403 1.31487 1.32585 0.94134 1.15499 1.10961 0.74369 0.73162 0.77232 1.93351 1.79988 1.37600 1.87615 1.93396 1.82007 1.62729 1.57289 1.55425 1.66482 1.13857 1.26036 1.20308 1.38519 0.82018 0.96261 0.85044 1.25564 0.97916 1.00241 0.94771 1.69944 1.40344 1.39305 0.98690 0.85769 0.79910 0.80223 0.78014 1.19509 1.20972 1.18879 1.19072 0.90323 0.95604 0.85541 1.29647 0.94729 0.89716 0.93315 1.80962 1.12126 1.12724 1.10361 1.20009 0.91225 0.96985 0.96216 0.93134 0.93063 0.88540 0.85568 0.85277 0.92970 0.93292 0.87913 0.90951 0.84729 0.88127 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.23 10.50 -19.71 -0.21 -5.44 16 3 C 0.06 1.08 6.69 -39.24 -0.26 0.82 16 4 C -0.13 -2.21 9.03 -39.45 -0.36 -2.56 16 5 C -0.20 -3.46 9.03 -39.45 -0.36 -3.82 16 6 C 0.19 3.98 6.63 -39.24 -0.26 3.72 16 7 O -0.28 -5.71 7.43 -29.55 -0.22 -5.93 16 8 C 0.03 0.44 9.81 101.05 0.99 1.43 16 9 C -0.66 -14.37 5.92 -39.45 -0.23 -14.60 16 10 S 2.55 58.29 5.25 -107.50 -0.56 57.73 16 11 O -1.00 -23.23 15.53 -57.17 -0.89 -24.11 16 12 O -0.96 -23.96 16.07 -62.53 -1.00 -24.96 16 13 N -0.79 -17.81 2.88 -62.77 -0.18 -18.00 16 14 C -0.22 -5.10 8.24 -15.06 -0.12 -5.22 16 15 H 0.13 3.03 6.66 -52.49 -0.35 2.68 16 16 C 0.03 0.56 4.96 -17.43 -0.09 0.47 16 17 N -0.84 -19.16 8.90 55.49 0.49 -18.67 16 18 Si 0.94 17.48 29.62 -169.99 -5.03 12.44 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 22 C 0.22 4.64 5.45 -6.83 -0.04 4.60 16 23 C 0.24 5.59 13.35 -20.67 -0.28 5.32 16 24 N -0.48 -11.76 18.56 42.26 0.78 -10.98 16 25 C -0.02 -0.51 9.48 -39.45 -0.37 -0.88 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.13 1.63 6.29 -52.49 -0.33 1.30 16 30 H 0.13 1.83 6.29 -52.48 -0.33 1.50 16 31 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 32 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 35 H 0.14 2.67 6.39 -51.93 -0.33 2.34 16 36 H 0.10 1.84 6.95 -51.93 -0.36 1.48 16 37 H 0.15 2.91 7.33 -52.49 -0.38 2.53 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -30.82 329.60 -5.90 -36.72 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -3.66 Total: 5.64 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.38 Total: -9.41 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 1.10 Total: -47.64 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -2.32 Total: -60.45 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 16 Polarization: 58.29 SS G_CDS: -0.56 Total: 57.73 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.82 -5.90 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342422442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.897 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds