Wall clock time and date at job start Tue Mar 31 2020 04:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 120.00170 * 2 1 4 4 H 1.48502 * 109.47157 * 269.99879 * 3 2 1 5 5 H 1.48504 * 109.47087 * 29.99774 * 3 2 1 6 6 H 1.48498 * 109.47327 * 149.99815 * 3 2 1 7 7 C 1.38952 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99677 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00053 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00188 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99928 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00396 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.47079 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99538 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00384 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99723 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46929 * 180.02562 * 16 14 13 18 18 O 1.42898 * 109.46896 * 179.97438 * 17 16 14 19 19 C 1.35929 * 117.00101 * 180.02562 * 18 17 16 20 20 C 1.38701 * 120.05648 * 359.95940 * 19 18 17 21 21 C 1.38153 * 119.95853 * 180.02562 * 20 19 18 22 22 C 1.38285 * 120.07157 * 0.02562 * 21 20 19 23 23 C 1.38238 * 120.11971 * 0.02562 * 22 21 20 24 24 C 1.38255 * 120.04624 * 359.94924 * 23 22 21 25 25 Cl 1.73604 * 120.04140 * 180.02562 * 24 23 22 26 26 H 0.96998 * 119.99556 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00053 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46806 * 60.00383 * 12 10 9 29 29 H 1.09001 * 109.47449 * 300.00390 * 12 10 9 30 30 H 0.96994 * 120.00016 * 0.02562 * 13 12 10 31 31 H 1.08993 * 109.46757 * 59.99785 * 16 14 13 32 32 H 1.09001 * 109.46999 * 300.00202 * 16 14 13 33 33 H 1.09004 * 109.47148 * 60.00126 * 17 16 14 34 34 H 1.08996 * 109.47021 * 299.99734 * 17 16 14 35 35 H 1.08003 * 120.02367 * 0.04181 * 20 19 18 36 36 H 1.08001 * 119.96476 * 180.29683 * 21 20 19 37 37 H 1.08006 * 119.93616 * 179.97438 * 22 21 20 38 38 H 1.08008 * 119.97717 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0021 11 8 3.4472 -3.4210 0.0021 12 6 5.5607 -2.3706 0.0021 13 7 6.0490 -3.7519 0.0027 14 6 7.3741 -3.9981 0.0034 15 8 8.1622 -3.0763 0.0039 16 6 7.8764 -5.4190 0.0034 17 6 9.4064 -5.4189 0.0048 18 8 9.8827 -6.7662 0.0055 19 6 11.2303 -6.9443 0.0073 20 6 12.0763 -5.8452 0.0076 21 6 13.4456 -6.0286 0.0089 22 6 13.9735 -7.3068 0.0094 23 6 13.1332 -8.4044 0.0080 24 6 11.7621 -8.2265 0.0073 25 17 10.7069 -9.6051 0.0062 26 1 -0.4849 0.8401 -0.0004 27 1 3.8648 -0.3633 0.0007 28 1 5.9240 -1.8560 0.8917 29 1 5.9241 -1.8575 -0.8883 30 1 5.4187 -4.4891 0.0027 31 1 7.5135 -5.9326 -0.8868 32 1 7.5126 -5.9329 0.8931 33 1 9.7689 -4.9053 0.8953 34 1 9.7705 -4.9049 -0.8847 35 1 11.6649 -4.8466 0.0070 36 1 14.1045 -5.1729 0.0140 37 1 15.0444 -7.4476 0.0100 38 1 13.5480 -9.4016 0.0080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344143495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:12 Heat of formation + Delta-G solvation = -92.317505 kcal Electronic energy + Delta-G solvation = -23396.358644 eV Core-core repulsion = 19458.140698 eV Total energy + Delta-G solvation = -3938.217946 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62624 -39.79379 -38.44094 -37.84605 -36.64319 -34.64387 -33.84535 -32.50776 -31.84736 -31.21190 -30.00640 -28.05726 -25.21459 -24.04911 -22.92417 -22.16470 -20.32169 -19.68057 -18.94922 -18.58512 -17.19865 -16.74184 -16.55958 -16.46743 -15.82998 -15.50051 -15.36946 -15.05080 -14.75506 -14.45355 -14.29060 -13.88713 -13.68015 -13.61199 -13.13506 -12.62835 -12.55500 -12.34487 -12.26272 -12.15726 -12.05326 -11.77075 -11.42243 -11.28052 -11.09960 -11.09492 -10.68805 -10.11564 -10.01569 -9.75067 -9.31081 -9.03811 -8.84166 -8.58144 -8.35715 -6.45309 -3.98201 0.72575 0.91089 1.87239 2.49343 2.56240 2.95305 3.00110 3.08736 3.21595 3.39351 3.49681 3.99127 4.30718 4.38004 4.46996 4.56429 4.66074 4.68843 4.82048 4.85152 5.05157 5.09065 5.17291 5.29748 5.43550 5.47053 5.59705 5.68151 5.69569 5.72374 5.78762 5.99605 6.21569 6.41475 6.90117 7.38298 7.56419 7.94637 8.18094 8.39844 8.76739 9.24530 9.57341 10.66710 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.030972 B = 0.001833 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.831147 B =15269.490626 C =16147.573208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.436 3.564 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.704 5.704 14 C 0.519 3.481 15 O -0.553 6.553 16 C -0.140 4.140 17 C 0.075 3.925 18 O -0.305 6.305 19 C 0.145 3.855 20 C -0.198 4.198 21 C -0.075 4.075 22 C -0.150 4.150 23 C -0.075 4.075 24 C -0.072 4.072 25 Cl -0.057 7.057 26 H 0.276 0.724 27 H 0.374 0.626 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.415 0.585 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.436 -12.488 0.000 30.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.212 5.212 10 C 0.222 3.778 11 O -0.463 6.463 12 C -0.022 4.022 13 N -0.358 5.358 14 C 0.305 3.695 15 O -0.432 6.432 16 C -0.180 4.180 17 C 0.000 4.000 18 O -0.218 6.218 19 C 0.098 3.902 20 C -0.217 4.217 21 C -0.093 4.093 22 C -0.168 4.168 23 C -0.093 4.093 24 C -0.100 4.100 25 Cl -0.029 7.029 26 H 0.087 0.913 27 H 0.208 0.792 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.253 0.747 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 27.053 -12.650 0.001 29.864 hybrid contribution 0.130 1.219 0.017 1.226 sum 27.183 -11.431 0.018 29.489 Atomic orbital electron populations 1.69617 1.05717 1.27874 1.47907 1.25077 0.95546 0.98197 0.97075 0.86667 0.79889 0.83750 0.79152 1.19363 1.19930 1.19257 1.19444 0.78922 0.96831 1.48788 0.86043 1.42121 1.07733 1.06123 1.65242 1.19613 0.88005 0.84932 0.85273 1.90549 1.69156 1.30868 1.55743 1.21002 0.93923 0.83816 1.03441 1.45656 1.06877 1.09467 1.73752 1.20148 0.82360 0.90612 0.76370 1.90705 1.55377 1.46380 1.50696 1.21427 0.94623 0.95260 1.06645 1.22509 0.93712 0.80567 1.03253 1.86075 1.17963 1.29817 1.87921 1.18663 0.83289 0.92339 0.95880 1.21379 0.94267 0.98331 1.07680 1.21097 0.94398 0.97637 0.96140 1.21041 1.00051 0.91894 1.03836 1.20930 0.90121 1.00305 0.97992 1.20233 0.91443 0.86431 1.11846 1.98376 1.66097 1.41313 1.97079 0.91327 0.79238 0.89592 0.89587 0.74688 0.87356 0.87363 0.90730 0.90720 0.84128 0.85053 0.84985 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.61 13.96 55.50 0.77 -23.83 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.66 27.74 -169.99 -4.71 13.94 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 7 C -0.31 -8.44 10.16 -14.93 -0.15 -8.60 16 8 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 9 N -0.57 -13.04 5.09 -10.97 -0.06 -13.09 16 10 C 0.44 9.27 7.85 -10.99 -0.09 9.18 16 11 O -0.58 -14.23 15.24 5.54 0.08 -14.15 16 12 C 0.11 1.72 6.15 -5.19 -0.03 1.69 16 13 N -0.70 -10.23 5.53 -61.47 -0.34 -10.57 16 14 C 0.52 6.87 7.83 -10.98 -0.09 6.79 16 15 O -0.55 -8.78 15.98 5.56 0.09 -8.69 16 16 C -0.14 -1.36 6.07 -27.88 -0.17 -1.53 16 17 C 0.07 0.73 4.03 37.16 0.15 0.88 16 18 O -0.30 -3.25 9.60 -19.52 -0.19 -3.44 16 19 C 0.15 1.47 6.68 -39.20 -0.26 1.21 16 20 C -0.20 -1.69 9.04 -39.44 -0.36 -2.05 16 21 C -0.07 -0.52 10.04 -39.60 -0.40 -0.91 16 22 C -0.15 -0.96 10.04 -39.56 -0.40 -1.36 16 23 C -0.07 -0.56 9.83 -39.58 -0.39 -0.95 16 24 C -0.07 -0.69 6.33 -39.36 -0.25 -0.94 16 25 Cl -0.06 -0.57 28.51 -51.86 -1.48 -2.05 16 26 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.37 7.46 5.76 -40.82 -0.24 7.23 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.41 5.96 7.44 -40.82 -0.30 5.65 16 31 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.72 7.62 -51.93 -0.40 0.33 16 34 H 0.07 0.72 7.62 -51.93 -0.40 0.33 16 35 H 0.14 1.10 6.30 -52.48 -0.33 0.77 16 36 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 38 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -32.38 349.10 -7.27 -39.64 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.18 Total: 12.45 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.52 Total: 4.52 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.38 Total: -47.50 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.01 Total: -26.28 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.71 Total: 13.94 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.38 -7.27 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344143495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.673 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds