Wall clock time and date at job start Tue Mar 31 2020 05:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28717 * 125.86598 * 2 1 4 4 N 1.28639 * 110.17878 * 179.97438 * 3 2 1 5 5 C 1.33775 * 108.88353 * 359.77088 * 4 3 2 6 6 C 1.35308 * 125.87111 * 179.97438 * 2 1 3 7 7 S 1.76208 * 126.91059 * 359.97438 * 6 2 1 8 8 O 1.42102 * 106.40074 * 336.45923 * 7 6 2 9 9 O 1.42096 * 106.40349 * 203.53947 * 7 6 2 10 10 N 1.65598 * 107.21780 * 89.99966 * 7 6 2 11 11 C 1.46502 * 119.99924 * 270.00075 * 10 7 6 12 12 C 1.50703 * 109.47134 * 265.00163 * 11 10 7 13 13 H 1.08000 * 119.99971 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00168 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99520 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00028 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47191 * 89.99956 * 16 14 12 18 18 H 1.48491 * 109.47112 * 209.99812 * 16 14 12 19 19 H 1.48501 * 109.47052 * 329.99910 * 16 14 12 20 20 C 1.46497 * 120.00412 * 90.00261 * 10 7 6 21 21 C 1.50697 * 109.46873 * 265.00139 * 20 10 7 22 22 C 1.34517 * 125.79067 * 90.00095 * 21 20 10 23 23 C 1.41388 * 106.83576 * 179.97438 * 22 21 20 24 24 C 1.34511 * 106.84442 * 359.97438 * 23 22 21 25 25 O 1.34295 * 108.42007 * 0.27361 * 24 23 22 26 26 H 1.09001 * 109.46982 * 270.02385 * 1 2 3 27 27 H 1.08999 * 109.46651 * 30.02195 * 1 2 3 28 28 H 1.09004 * 109.46980 * 150.02319 * 1 2 3 29 29 H 1.08000 * 126.75423 * 180.23324 * 5 4 3 30 30 H 1.08998 * 109.47224 * 24.99975 * 11 10 7 31 31 H 1.08999 * 109.47345 * 145.00229 * 11 10 7 32 32 H 0.97007 * 119.99596 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.47386 * 144.99758 * 20 10 7 34 34 H 1.09004 * 109.46598 * 24.99649 * 20 10 7 35 35 H 1.07992 * 126.58259 * 359.93887 * 22 21 20 36 36 H 1.08001 * 126.57171 * 180.02562 * 23 22 21 37 37 H 1.08002 * 125.78644 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6953 0.0005 5 6 3.5322 -0.6404 0.0060 6 6 2.2579 -1.0965 0.0005 7 16 1.7363 -2.7796 0.0019 8 8 0.4240 -2.7925 0.5468 9 8 2.8114 -3.5324 0.5464 10 7 1.5906 -3.2489 -1.5795 11 6 0.3143 -3.0809 -2.2788 12 6 -0.4738 -4.3631 -2.2010 13 1 -0.0650 -5.2175 -1.6821 14 6 -1.7167 -4.4455 -2.7922 15 7 -2.2146 -3.4049 -3.4236 16 14 -2.6931 -6.0350 -2.6963 17 1 -3.5467 -6.0191 -1.4812 18 1 -3.5506 -6.1627 -3.9019 19 1 -1.7583 -7.1869 -2.6294 20 6 2.7379 -3.8321 -2.2792 21 6 3.4628 -2.7530 -3.0416 22 6 4.4701 -1.9972 -2.5689 23 6 4.8491 -1.1211 -3.6119 24 6 4.0511 -1.3944 -4.6597 25 8 3.2097 -2.3798 -4.3067 26 1 -0.3633 0.0004 1.0277 27 1 -0.3632 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 4.4322 -1.2373 0.0113 30 1 -0.2534 -2.2766 -1.8108 31 1 0.5022 -2.8328 -3.3234 32 1 -3.0893 -3.4627 -3.8392 33 1 2.3897 -4.5964 -2.9740 34 1 3.4155 -4.2821 -1.5536 35 1 4.9054 -2.0491 -1.5819 36 1 5.6301 -0.3761 -3.5747 37 1 4.0789 -0.9014 -5.6203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359694802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:13 Heat of formation + Delta-G solvation = 57.174504 kcal Electronic energy + Delta-G solvation = -26993.078092 eV Core-core repulsion = 23095.679064 eV Total energy + Delta-G solvation = -3897.399029 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.26250 -42.31836 -37.14451 -36.21420 -35.61746 -34.60137 -32.99550 -32.60108 -31.33442 -30.24489 -27.94678 -27.29848 -25.19356 -23.26187 -22.73204 -22.33796 -21.47791 -20.37295 -18.95098 -17.98204 -17.61180 -16.95597 -16.69040 -16.41665 -16.10393 -15.97607 -15.44737 -14.76857 -14.50952 -14.32310 -13.73630 -13.31305 -13.17931 -13.09284 -12.72810 -12.63750 -12.46155 -12.34852 -12.27088 -11.88926 -11.77160 -11.42901 -11.32317 -11.23742 -10.97048 -10.90150 -10.70214 -10.24850 -10.20759 -10.05062 -9.84317 -9.60965 -8.60201 -8.54816 -8.30741 -6.22417 -4.27754 0.48624 1.14221 1.89467 2.29150 2.40100 2.76565 3.18055 3.24191 3.30747 3.33240 3.40322 3.90030 4.19578 4.31964 4.58502 4.75848 4.88740 5.06392 5.09566 5.12465 5.16614 5.19724 5.32002 5.51716 5.61435 5.83836 5.87037 5.96039 5.96881 6.13830 6.29257 6.32490 6.66857 6.91402 7.05646 7.27118 7.36848 7.74022 7.97468 8.29224 8.74581 9.38746 10.86186 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.006148 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.464809 B = 4553.302907 C = 5552.999723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.215 5.215 3 N -0.054 5.054 4 N -0.281 5.281 5 C 0.061 3.939 6 C -0.591 4.591 7 S 2.705 3.295 8 O -0.928 6.928 9 O -0.952 6.952 10 N -0.967 5.967 11 C 0.254 3.746 12 C -0.533 4.533 13 H 0.065 0.935 14 C 0.066 3.934 15 N -0.893 5.893 16 Si 0.899 3.101 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.194 3.806 21 C -0.021 4.021 22 C -0.214 4.214 23 C -0.212 4.212 24 C -0.044 4.044 25 O -0.161 6.161 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.198 0.802 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.266 0.734 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.508 4.079 1.577 10.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.011 5.011 3 N -0.036 5.036 4 N -0.143 5.143 5 C -0.101 4.101 6 C -0.801 4.801 7 S 2.785 3.215 8 O -0.918 6.918 9 O -0.942 6.942 10 N -0.806 5.806 11 C 0.133 3.867 12 C -0.573 4.573 13 H 0.084 0.916 14 C -0.137 4.137 15 N -0.531 5.531 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.196 1.196 20 C 0.067 3.933 21 C -0.074 4.074 22 C -0.234 4.234 23 C -0.231 4.231 24 C -0.113 4.113 25 O -0.056 6.056 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.141 0.859 29 H 0.215 0.785 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.954 5.141 2.027 10.522 hybrid contribution -0.315 -0.875 -0.385 1.007 sum 8.639 4.266 1.642 9.774 Atomic orbital electron populations 1.22925 0.70840 1.07889 1.06689 1.47063 1.09666 1.02666 1.41712 1.78123 0.96892 1.12908 1.15654 1.75081 1.09375 1.12013 1.17875 1.23503 0.96101 0.91998 0.98462 1.35323 1.00363 1.19164 1.25290 1.02179 0.73694 0.72013 0.73581 1.93623 1.36324 1.85565 1.76268 1.93552 1.57023 1.66561 1.77032 1.57643 1.18895 1.73361 1.30740 1.19276 0.76273 0.97829 0.93346 1.21405 1.02018 0.98243 1.35593 0.91631 1.24917 0.97225 0.96918 0.94667 1.69911 1.18320 1.29616 1.35266 0.86479 0.80008 0.83224 0.77679 1.20322 1.21126 1.19621 1.19804 0.86721 0.91090 0.95676 1.23294 0.98908 1.01386 0.83789 1.21707 1.00884 0.99641 1.01167 1.21744 1.03945 1.03592 0.93834 1.24016 0.93212 0.93152 1.00887 1.84112 1.49615 1.43634 1.28247 0.87547 0.87212 0.85920 0.78496 0.94638 0.93815 0.92478 0.86875 0.86443 0.83671 0.83763 0.78545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.52 59.85 0.63 1.40 16 2 N -0.21 -3.47 3.74 -67.15 -0.25 -3.73 16 3 N -0.05 -0.91 13.17 60.35 0.79 -0.12 16 4 N -0.28 -4.77 12.41 30.24 0.38 -4.39 16 5 C 0.06 0.95 10.20 -17.73 -0.18 0.77 16 6 C -0.59 -9.76 7.06 -17.05 -0.12 -9.88 16 7 S 2.70 48.31 5.63 -107.50 -0.60 47.71 16 8 O -0.93 -18.76 14.87 -57.17 -0.85 -19.61 16 9 O -0.95 -17.03 16.43 -57.17 -0.94 -17.97 16 10 N -0.97 -17.92 2.75 -116.95 -0.32 -18.24 16 11 C 0.25 5.68 5.10 -5.19 -0.03 5.66 16 12 C -0.53 -13.43 9.38 -34.44 -0.32 -13.75 16 13 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 16 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 20 C 0.19 3.06 6.21 -5.20 -0.03 3.02 16 21 C -0.02 -0.33 6.90 -35.63 -0.25 -0.57 16 22 C -0.21 -3.00 9.52 -39.70 -0.38 -3.38 16 23 C -0.21 -2.78 10.91 -39.70 -0.43 -3.22 16 24 C -0.04 -0.59 12.09 29.41 0.36 -0.23 16 25 O -0.16 -2.64 10.65 5.71 0.06 -2.58 16 26 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.12 1.90 4.89 -51.93 -0.25 1.65 16 29 H 0.20 2.43 6.40 -52.49 -0.34 2.10 16 30 H 0.04 0.82 5.74 -51.93 -0.30 0.52 16 31 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.11 1.77 8.11 -51.93 -0.42 1.35 16 34 H 0.12 1.58 6.91 -51.93 -0.36 1.22 16 35 H 0.15 1.77 5.97 -52.49 -0.31 1.45 16 36 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -31.71 331.79 -5.51 -37.22 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -3.64 Total: 3.34 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.85 Total: -18.57 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 1.33 Total: -49.79 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.73 Total: -40.16 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.60 Total: 47.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.71 -5.51 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359694802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.397 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds