Wall clock time and date at job start Tue Mar 31 2020 05:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28717 * 125.86598 * 2 1 4 4 N 1.28639 * 110.17878 * 179.97438 * 3 2 1 5 5 C 1.33775 * 108.88353 * 359.77088 * 4 3 2 6 6 C 1.35308 * 125.87111 * 179.97438 * 2 1 3 7 7 S 1.76208 * 126.91059 * 359.97438 * 6 2 1 8 8 O 1.42102 * 106.40074 * 336.45923 * 7 6 2 9 9 O 1.42096 * 106.40349 * 203.53947 * 7 6 2 10 10 N 1.65598 * 107.21780 * 89.99966 * 7 6 2 11 11 C 1.46502 * 119.99924 * 270.00075 * 10 7 6 12 12 C 1.50703 * 109.47134 * 265.00163 * 11 10 7 13 13 H 1.08000 * 119.99971 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00168 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99520 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00028 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47191 * 89.99956 * 16 14 12 18 18 H 1.48491 * 109.47112 * 209.99812 * 16 14 12 19 19 H 1.48501 * 109.47052 * 329.99910 * 16 14 12 20 20 C 1.46497 * 120.00412 * 90.00261 * 10 7 6 21 21 C 1.50697 * 109.46873 * 265.00139 * 20 10 7 22 22 C 1.34517 * 125.79067 * 90.00095 * 21 20 10 23 23 C 1.41388 * 106.83576 * 179.97438 * 22 21 20 24 24 C 1.34511 * 106.84442 * 359.97438 * 23 22 21 25 25 O 1.34295 * 108.42007 * 0.27361 * 24 23 22 26 26 H 1.09001 * 109.46982 * 270.02385 * 1 2 3 27 27 H 1.08999 * 109.46651 * 30.02195 * 1 2 3 28 28 H 1.09004 * 109.46980 * 150.02319 * 1 2 3 29 29 H 1.08000 * 126.75423 * 180.23324 * 5 4 3 30 30 H 1.08998 * 109.47224 * 24.99975 * 11 10 7 31 31 H 1.08999 * 109.47345 * 145.00229 * 11 10 7 32 32 H 0.97007 * 119.99596 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.47386 * 144.99758 * 20 10 7 34 34 H 1.09004 * 109.46598 * 24.99649 * 20 10 7 35 35 H 1.07992 * 126.58259 * 359.93887 * 22 21 20 36 36 H 1.08001 * 126.57171 * 180.02562 * 23 22 21 37 37 H 1.08002 * 125.78644 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6953 0.0005 5 6 3.5322 -0.6404 0.0060 6 6 2.2579 -1.0965 0.0005 7 16 1.7363 -2.7796 0.0019 8 8 0.4240 -2.7925 0.5468 9 8 2.8114 -3.5324 0.5464 10 7 1.5906 -3.2489 -1.5795 11 6 0.3143 -3.0809 -2.2788 12 6 -0.4738 -4.3631 -2.2010 13 1 -0.0650 -5.2175 -1.6821 14 6 -1.7167 -4.4455 -2.7922 15 7 -2.2146 -3.4049 -3.4236 16 14 -2.6931 -6.0350 -2.6963 17 1 -3.5467 -6.0191 -1.4812 18 1 -3.5506 -6.1627 -3.9019 19 1 -1.7583 -7.1869 -2.6294 20 6 2.7379 -3.8321 -2.2792 21 6 3.4628 -2.7530 -3.0416 22 6 4.4701 -1.9972 -2.5689 23 6 4.8491 -1.1211 -3.6119 24 6 4.0511 -1.3944 -4.6597 25 8 3.2097 -2.3798 -4.3067 26 1 -0.3633 0.0004 1.0277 27 1 -0.3632 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 4.4322 -1.2373 0.0113 30 1 -0.2534 -2.2766 -1.8108 31 1 0.5022 -2.8328 -3.3234 32 1 -3.0893 -3.4627 -3.8392 33 1 2.3897 -4.5964 -2.9740 34 1 3.4155 -4.2821 -1.5536 35 1 4.9054 -2.0491 -1.5819 36 1 5.6301 -0.3761 -3.5747 37 1 4.0789 -0.9014 -5.6203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359694802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:12 Heat of formation + Delta-G solvation = 34.158860 kcal Electronic energy + Delta-G solvation = -26994.076125 eV Core-core repulsion = 23095.679064 eV Total energy + Delta-G solvation = -3898.397062 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.53051 -43.42168 -38.60854 -37.70669 -37.09988 -35.83696 -34.71877 -33.86600 -32.61007 -31.56278 -29.15175 -28.89878 -26.58360 -24.54063 -24.43753 -23.64155 -22.57054 -21.51032 -20.30452 -19.36747 -18.95950 -18.49712 -18.02251 -17.72641 -17.53600 -17.41826 -16.71588 -16.40896 -15.81622 -15.54811 -15.23095 -14.59834 -14.48963 -14.24795 -14.14913 -13.97395 -13.80457 -13.61146 -13.46269 -13.35300 -13.20040 -13.05795 -12.85416 -12.71280 -12.50858 -12.45175 -12.21284 -12.00666 -11.81876 -11.47363 -11.08472 -10.74536 -10.57009 -10.13550 -9.42017 -8.19164 -6.29970 -0.93226 -0.14590 0.76988 1.09943 1.15030 1.45144 1.47201 1.55707 1.68857 1.94877 2.21618 2.42270 2.51824 2.89183 3.13757 3.35028 3.59284 3.78793 3.82287 3.88252 4.09268 4.16816 4.25431 4.41745 4.43553 4.57810 4.66951 4.76278 4.95345 5.03756 5.09154 5.16295 5.22726 5.33665 5.56389 5.65943 5.78794 6.06641 6.28300 6.78042 7.01554 7.39323 8.88863 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.012243 B = 0.006148 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.464809 B = 4553.302907 C = 5552.999723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.213 5.213 3 N -0.061 5.061 4 N -0.295 5.295 5 C 0.070 3.930 6 C -0.602 4.602 7 S 2.721 3.279 8 O -0.956 6.956 9 O -0.952 6.952 10 N -0.971 5.971 11 C 0.270 3.730 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.018 3.982 15 N -0.922 5.922 16 Si 0.953 3.047 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.188 3.812 21 C -0.047 4.047 22 C -0.208 4.208 23 C -0.219 4.219 24 C -0.047 4.047 25 O -0.190 6.190 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.227 0.773 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.267 0.733 33 H 0.106 0.894 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.717 4.257 1.892 11.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.011 5.011 3 N -0.043 5.043 4 N -0.156 5.156 5 C -0.092 4.092 6 C -0.815 4.815 7 S 2.804 3.196 8 O -0.946 6.946 9 O -0.941 6.941 10 N -0.810 5.810 11 C 0.147 3.853 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.182 4.182 15 N -0.562 5.562 16 Si 0.778 3.222 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.188 1.188 20 C 0.063 3.937 21 C -0.099 4.099 22 C -0.228 4.228 23 C -0.238 4.238 24 C -0.115 4.115 25 O -0.086 6.086 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.120 0.880 29 H 0.244 0.756 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 10.180 5.290 2.346 11.710 hybrid contribution -0.613 -0.859 -0.493 1.165 sum 9.567 4.431 1.854 10.705 Atomic orbital electron populations 1.23161 0.69790 1.08091 1.08205 1.47282 1.10378 1.02397 1.40995 1.78097 0.97171 1.13122 1.15913 1.75074 1.09379 1.12644 1.18518 1.24005 0.96672 0.91701 0.96815 1.35057 1.01036 1.18570 1.26801 1.01455 0.73057 0.72162 0.72914 1.93588 1.37928 1.86236 1.76832 1.93545 1.56704 1.66997 1.76860 1.57505 1.18529 1.74079 1.30851 1.18806 0.77615 0.96426 0.92430 1.21765 1.02400 0.99233 1.34979 0.91730 1.25653 0.98327 0.99619 0.94588 1.70002 1.18702 1.31228 1.36241 0.85631 0.78800 0.80205 0.77582 1.20254 1.20759 1.18766 1.19985 0.86252 0.91292 0.96185 1.23217 1.00111 1.02481 0.84057 1.22010 0.99911 0.98818 1.02047 1.22090 1.04453 1.03879 0.93348 1.24772 0.92271 0.92103 1.02345 1.84089 1.50860 1.44821 1.28820 0.85430 0.84700 0.87986 0.75637 0.95468 0.95864 0.92451 0.87535 0.84117 0.81880 0.81412 0.75443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.24 10.52 127.77 1.34 2.58 16 2 N -0.21 -6.66 3.74 -366.37 -1.37 -8.03 16 3 N -0.06 -1.98 13.17 37.02 0.49 -1.49 16 4 N -0.29 -9.39 12.41 -58.25 -0.72 -10.12 16 5 C 0.07 2.02 10.20 83.73 0.85 2.88 16 6 C -0.60 -19.12 7.06 83.49 0.59 -18.53 16 7 S 2.72 95.39 5.63 -56.49 -0.32 95.08 16 8 O -0.96 -38.69 14.87 -128.00 -1.90 -40.60 16 9 O -0.95 -32.56 16.43 -128.00 -2.10 -34.66 16 10 N -0.97 -35.99 2.75 -523.91 -1.44 -37.43 16 11 C 0.27 12.36 5.10 85.63 0.44 12.80 16 12 C -0.54 -27.77 9.38 25.60 0.24 -27.52 16 13 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 14 C 0.02 0.95 5.46 84.66 0.46 1.42 16 15 N -0.92 -50.44 13.29 21.45 0.28 -50.15 16 16 Si 0.95 41.49 29.54 68.60 2.03 43.52 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 20 C 0.19 5.88 6.21 85.63 0.53 6.41 16 21 C -0.05 -1.42 6.90 24.83 0.17 -1.25 16 22 C -0.21 -5.40 9.52 22.19 0.21 -5.19 16 23 C -0.22 -5.21 10.91 22.19 0.24 -4.97 16 24 C -0.05 -1.18 12.09 66.97 0.81 -0.37 16 25 O -0.19 -6.15 10.65 -2.47 -0.03 -6.17 16 26 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.10 3.21 4.89 -2.39 -0.01 3.20 16 29 H 0.23 4.85 6.40 -2.91 -0.02 4.83 16 30 H 0.03 1.30 5.74 -2.39 -0.01 1.28 16 31 H 0.02 1.15 8.11 -2.39 -0.02 1.13 16 32 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 33 H 0.11 3.40 8.11 -2.39 -0.02 3.38 16 34 H 0.14 3.62 6.91 -2.38 -0.02 3.60 16 35 H 0.16 3.48 5.97 -2.91 -0.02 3.46 16 36 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 37 H 0.23 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -67.03 331.79 1.93 -65.10 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.13 Total: 16.72 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 5.89 Total: -31.75 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -2.76 Total: -107.23 kcal Atomic # 8 Polarization: -77.40 SS G_CDS: -4.03 Total: -81.43 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 95.39 SS G_CDS: -0.32 Total: 95.08 kcal Total: -67.03 1.93 -65.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359694802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.256 kcal (2) G-P(sol) polarization free energy of solvation -67.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds