Wall clock time and date at job start Tue Mar 31 2020 04:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99738 * 2 1 4 4 H 1.48499 * 109.47127 * 270.00073 * 3 2 1 5 5 H 1.48501 * 109.47082 * 30.00063 * 3 2 1 6 6 H 1.48502 * 109.47234 * 150.00296 * 3 2 1 7 7 C 1.37878 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00008 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99907 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47310 * 180.02562 * 9 7 2 11 11 S 1.65596 * 120.00554 * 164.99988 * 10 9 7 12 12 O 1.42101 * 106.40142 * 311.46430 * 11 10 9 13 13 O 1.42099 * 106.40812 * 178.53943 * 11 10 9 14 14 C 1.76208 * 107.21611 * 64.99915 * 11 10 9 15 15 C 1.39038 * 120.06280 * 90.00593 * 14 11 10 16 16 N 1.31386 * 121.79501 * 179.97438 * 15 14 11 17 17 C 1.33348 * 121.22433 * 0.02562 * 16 15 14 18 18 N 1.34044 * 121.74618 * 179.97438 * 17 16 15 19 19 C 1.31758 * 120.49379 * 180.02562 * 18 17 16 20 20 O 1.35383 * 118.56231 * 179.97438 * 19 18 17 21 21 N 1.32881 * 122.87886 * 359.97438 * 19 18 17 22 22 C 1.32367 * 121.32918 * 359.97438 * 21 19 18 23 23 O 1.35247 * 120.85854 * 180.02562 * 22 21 19 24 24 C 1.41406 * 118.27705 * 0.02562 * 22 21 19 25 25 C 1.36943 * 120.06287 * 270.02296 * 14 11 10 26 26 H 0.96999 * 119.99928 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47156 * 59.99961 * 9 7 2 28 28 H 1.08999 * 109.47188 * 299.99930 * 9 7 2 29 29 H 0.97004 * 120.00167 * 344.99689 * 10 9 7 30 30 H 1.08004 * 119.10336 * 0.02562 * 15 14 11 31 31 H 0.96699 * 113.99847 * 90.00156 * 20 19 18 32 32 H 0.96699 * 114.00355 * 269.98294 * 23 22 21 33 33 H 1.08008 * 120.98570 * 359.95720 * 25 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5751 -0.0022 11 16 5.5819 -2.8937 -0.3742 12 8 5.8659 -2.1761 -1.5673 13 8 5.7468 -4.3001 -0.2553 14 6 6.5714 -2.1681 0.8904 15 6 6.9052 -2.9038 2.0219 16 7 7.6412 -2.3969 2.9850 17 6 8.1019 -1.1473 2.9183 18 7 8.8531 -0.6195 3.8949 19 6 9.2950 0.6184 3.8036 20 8 10.0501 1.1123 4.8129 21 7 9.0319 1.4035 2.7643 22 6 8.2998 0.9768 1.7474 23 8 8.0383 1.7838 0.6940 24 6 7.7983 -0.3446 1.7909 25 6 7.0128 -0.8782 0.7607 26 1 -0.4850 0.8400 0.0004 27 1 3.8753 -0.6803 0.8889 28 1 3.8746 -0.6799 -0.8911 29 1 3.3968 -3.3031 0.2150 30 1 6.5505 -3.9201 2.1112 31 1 10.9995 0.9654 4.7021 32 1 7.2321 2.3087 0.7913 33 1 6.7646 -0.2905 -0.1108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487335845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:41 Heat of formation + Delta-G solvation = -51.255668 kcal Electronic energy + Delta-G solvation = -25174.419395 eV Core-core repulsion = 21136.485387 eV Total energy + Delta-G solvation = -4037.934008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24290 -39.57961 -38.83179 -37.15962 -36.83154 -35.76229 -35.02233 -34.15611 -32.84036 -32.38950 -31.00580 -27.60301 -25.91288 -25.28544 -23.40728 -22.25671 -21.15947 -19.83332 -19.54231 -18.75055 -18.57380 -17.71940 -17.34717 -16.78024 -16.32749 -16.27212 -15.84833 -15.68861 -15.03243 -14.74921 -14.60364 -13.74443 -13.71281 -13.24768 -13.17901 -12.85864 -12.69651 -12.50436 -12.27598 -12.04532 -11.96161 -11.86840 -11.75008 -11.52660 -11.08266 -10.84893 -10.44934 -10.21931 -10.18343 -9.71587 -9.63577 -9.50710 -9.12323 -8.73272 -6.34469 -4.37140 -0.70086 -0.18549 0.48343 1.05756 1.98999 2.21007 2.79164 3.05072 3.09707 3.13986 3.21395 3.31401 3.42755 3.79891 3.83224 3.90354 4.13981 4.22945 4.42204 4.58314 4.64675 4.96876 5.00105 5.11002 5.31226 5.70426 5.89243 6.05763 6.56736 6.65088 6.66104 6.87141 7.02928 7.18175 7.54920 7.58106 8.19856 8.67473 9.21958 10.77946 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.004928 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.282713 B = 5680.941170 C = 7065.478693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.215 3.785 10 N -1.090 6.090 11 S 2.696 3.304 12 O -0.951 6.951 13 O -0.960 6.960 14 C -0.749 4.749 15 C 0.271 3.729 16 N -0.476 5.476 17 C 0.410 3.590 18 N -0.518 5.518 19 C 0.564 3.436 20 O -0.450 6.450 21 N -0.562 5.562 22 C 0.471 3.529 23 O -0.463 6.463 24 C -0.268 4.268 25 C 0.114 3.886 26 H 0.269 0.731 27 H 0.016 0.984 28 H 0.034 0.966 29 H 0.420 0.580 30 H 0.192 0.808 31 H 0.419 0.581 32 H 0.426 0.574 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.843 1.097 3.649 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.103 0.897 9 C 0.090 3.910 10 N -0.853 5.853 11 S 2.779 3.221 12 O -0.940 6.940 13 O -0.950 6.950 14 C -0.833 4.833 15 C 0.095 3.905 16 N -0.187 5.187 17 C 0.164 3.836 18 N -0.247 5.247 19 C 0.257 3.743 20 O -0.254 6.254 21 N -0.299 5.299 22 C 0.270 3.730 23 O -0.273 6.273 24 C -0.278 4.278 25 C 0.085 3.915 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.052 0.948 29 H 0.257 0.743 30 H 0.209 0.791 31 H 0.280 0.720 32 H 0.290 0.710 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 17.998 0.815 4.600 18.594 hybrid contribution -0.372 1.520 -0.470 1.634 sum 17.625 2.334 4.130 18.252 Atomic orbital electron populations 1.69859 1.06154 1.27468 1.48927 1.24863 0.94837 0.98988 0.94148 0.86910 0.80149 0.83906 0.79114 1.19322 1.20684 1.19300 1.20995 0.87801 0.95407 1.53127 0.89683 1.19511 0.98170 0.77164 0.96112 1.55249 1.25400 1.17262 1.87404 1.02053 0.73061 0.73182 0.73797 1.93599 1.84596 1.74449 1.41392 1.93577 1.85985 1.28673 1.86792 1.32318 1.22555 1.06965 1.21451 1.23006 0.84510 0.98922 0.84028 1.67853 1.12436 1.10186 1.28230 1.19060 0.88497 0.90005 0.86012 1.67953 1.15263 1.12150 1.29357 1.19770 0.88762 0.82416 0.83366 1.84700 1.23175 1.78505 1.39001 1.67482 1.20042 1.40531 1.01836 1.19243 0.84407 0.86264 0.83098 1.84586 1.49876 1.58408 1.34427 1.20478 1.07844 0.98350 1.01142 1.21317 0.83292 0.92160 0.94708 0.92090 0.96613 0.94812 0.74337 0.79095 0.71973 0.71029 0.81039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 13.96 55.43 0.77 -24.06 16 2 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 18.69 27.47 -169.99 -4.67 14.02 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.12 6.54 56.52 0.37 -4.75 16 7 C -0.53 -13.32 9.83 -34.44 -0.34 -13.66 16 8 H 0.09 2.27 7.90 -52.49 -0.41 1.85 16 9 C 0.21 4.33 5.04 -5.20 -0.03 4.30 16 10 N -1.09 -18.08 5.99 -11.66 -0.07 -18.15 16 11 S 2.70 39.89 5.74 -107.50 -0.62 39.27 16 12 O -0.95 -16.26 16.78 -57.17 -0.96 -17.22 16 13 O -0.96 -14.97 17.27 -57.17 -0.99 -15.95 16 14 C -0.75 -9.92 5.93 -39.75 -0.24 -10.16 16 15 C 0.27 3.49 10.64 -17.45 -0.19 3.30 16 16 N -0.48 -7.01 10.44 -12.62 -0.13 -7.15 16 17 C 0.41 6.05 7.66 -157.84 -1.21 4.84 16 18 N -0.52 -7.48 10.53 -14.42 -0.15 -7.63 16 19 C 0.56 7.02 8.64 -91.24 -0.79 6.24 16 20 O -0.45 -4.31 13.63 -17.84 -0.24 -4.55 16 21 N -0.56 -6.94 10.45 -14.42 -0.15 -7.09 16 22 C 0.47 5.52 7.89 -16.12 -0.13 5.39 16 23 O -0.46 -4.21 12.96 -17.44 -0.23 -4.43 16 24 C -0.27 -3.51 5.75 -106.67 -0.61 -4.12 16 25 C 0.11 1.45 9.16 -39.35 -0.36 1.09 16 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.02 0.31 7.20 -51.93 -0.37 -0.07 16 28 H 0.03 0.68 7.18 -51.93 -0.37 0.30 16 29 H 0.42 6.47 8.54 -34.46 -0.29 6.18 16 30 H 0.19 1.90 7.58 -52.48 -0.40 1.50 16 31 H 0.42 1.58 9.06 45.56 0.41 1.99 16 32 H 0.43 1.91 9.06 45.56 0.41 2.33 16 33 H 0.17 1.86 7.37 -52.48 -0.39 1.47 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -35.27 314.18 -7.26 -42.53 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -0.58 Total: 6.59 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.98 Total: -0.91 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.27 Total: -64.08 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -2.42 Total: -42.16 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.67 Total: 14.02 kcal Atomic # 16 Polarization: 39.89 SS G_CDS: -0.62 Total: 39.27 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.27 -7.26 -42.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487335845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.726 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds