Wall clock time and date at job start Tue Mar 31 2020 05:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30414 * 125.96944 * 2 1 4 4 N 1.39912 * 109.03055 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.73785 * 180.02562 * 4 3 2 6 6 C 1.34470 * 108.52154 * 359.72814 * 4 3 2 7 7 Cl 1.73603 * 126.34558 * 180.26763 * 6 4 3 8 8 C 1.38518 * 107.31528 * 0.42824 * 6 4 3 9 9 C 1.46849 * 126.46945 * 179.83466 * 8 6 4 10 10 C 1.35131 * 119.99749 * 309.97198 * 9 8 6 11 11 C 1.41734 * 119.99784 * 179.72376 * 10 9 8 12 12 O 1.21753 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99657 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99725 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47131 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99672 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99864 * 179.97438 * 15 14 13 18 18 C 1.37107 * 119.99826 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99605 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00069 * 179.97438 * 18 17 15 21 21 N 1.31420 * 119.99979 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00095 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47206 * 60.00333 * 22 20 18 24 24 H 1.48505 * 109.47269 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47105 * 300.00161 * 22 20 18 26 26 H 1.09001 * 109.47251 * 269.95483 * 1 2 3 27 27 H 1.09000 * 109.47006 * 29.96406 * 1 2 3 28 28 H 1.08999 * 109.46927 * 149.95827 * 1 2 3 29 29 H 1.08995 * 109.47363 * 90.02711 * 5 4 3 30 30 H 1.09004 * 109.47085 * 210.02356 * 5 4 3 31 31 H 1.09000 * 109.47295 * 330.02259 * 5 4 3 32 32 H 1.08002 * 119.99815 * 129.68506 * 9 8 6 33 33 H 1.08001 * 119.99843 * 359.71303 * 10 9 8 34 34 H 0.97001 * 120.00485 * 359.97438 * 13 11 10 35 35 H 1.08995 * 109.46852 * 299.99778 * 14 13 11 36 36 H 1.09001 * 109.47048 * 59.99797 * 14 13 11 37 37 H 0.96993 * 120.00302 * 0.02562 * 17 15 14 38 38 H 0.96995 * 119.99975 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0555 0.0000 4 7 3.6114 0.6478 -0.0006 5 6 4.7764 1.5360 -0.0002 6 6 3.6486 -0.6963 0.0051 7 17 5.0747 -1.6862 0.0134 8 6 2.3381 -1.1450 -0.0006 9 6 1.8948 -2.5450 -0.0008 10 6 2.4118 -3.4172 -0.8941 11 6 1.9883 -4.7698 -0.8905 12 8 1.1590 -5.1459 -0.0824 13 7 2.5037 -5.6396 -1.7817 14 6 2.0663 -7.0378 -1.7777 15 6 2.7880 -7.7931 -2.8638 16 8 3.5893 -7.2198 -3.5713 17 7 2.5439 -9.1056 -3.0483 18 6 3.2010 -9.7928 -4.0361 19 1 3.9145 -9.2824 -4.6661 20 6 2.9497 -11.1462 -4.2260 21 7 2.0819 -11.7673 -3.4591 22 14 3.8454 -12.0826 -5.5714 23 1 5.3089 -12.0203 -5.3277 24 1 3.4024 -13.5000 -5.5671 25 1 3.5366 -11.4720 -6.8893 26 1 -0.3634 -0.0008 1.0277 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3633 -0.8896 -0.5145 29 1 5.0658 1.7553 1.0274 30 1 5.6047 1.0491 -0.5150 31 1 4.5255 2.4646 -0.5130 32 1 1.1589 -2.8785 0.7159 33 1 3.1477 -3.0836 -1.6108 34 1 3.1641 -5.3399 -2.4258 35 1 2.2928 -7.4865 -0.8106 36 1 0.9920 -7.0830 -1.9565 37 1 1.9035 -9.5641 -2.4823 38 1 1.9063 -12.7119 -3.5919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492918490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:32 Heat of formation + Delta-G solvation = 11.822048 kcal Electronic energy + Delta-G solvation = -23646.355460 eV Core-core repulsion = 19744.946095 eV Total energy + Delta-G solvation = -3901.409365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67535 -39.63772 -38.12616 -37.32150 -35.04045 -34.40397 -33.62257 -33.36131 -31.36649 -30.26920 -29.58010 -27.77866 -26.09928 -24.62538 -23.11874 -21.12762 -20.24376 -19.71727 -19.18306 -18.05314 -17.64567 -17.05645 -16.27344 -15.66609 -15.48226 -15.21504 -15.10186 -14.54404 -14.21687 -14.09528 -13.93213 -13.75413 -13.63887 -13.25333 -13.05164 -13.02686 -12.67039 -12.46179 -12.15915 -12.08988 -11.93000 -11.68656 -11.61477 -11.09733 -11.06330 -10.49772 -10.30189 -10.00747 -9.74403 -9.61549 -9.61159 -8.76947 -8.60977 -8.41313 -8.08408 -6.49868 -3.91909 0.80657 0.99489 1.38100 2.14264 2.26207 3.14778 3.22283 3.25677 3.55078 3.58102 3.77181 3.91401 4.13554 4.41407 4.62889 4.73587 4.80466 4.90992 4.91401 4.97002 5.18631 5.19480 5.30300 5.40680 5.46032 5.58385 5.93289 6.00752 6.06173 6.09501 6.15082 6.22489 6.35241 6.74884 7.11928 7.47223 7.89064 7.93731 8.46335 8.52730 9.06085 9.41167 9.89295 10.66985 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.002130 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.066333 B =13141.511048 C =13883.606856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.108 3.892 3 N -0.278 5.278 4 N -0.358 5.358 5 C 0.093 3.907 6 C 0.137 3.863 7 Cl 0.013 6.987 8 C -0.200 4.200 9 C 0.017 3.983 10 C -0.201 4.201 11 C 0.547 3.453 12 O -0.558 6.558 13 N -0.703 5.703 14 C 0.109 3.891 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.550 5.550 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.411 0.589 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.396 0.604 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 24.615 8.897 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 N -0.101 5.101 4 N -0.140 5.140 5 C -0.047 4.047 6 C -0.019 4.019 7 Cl 0.041 6.959 8 C -0.213 4.213 9 C -0.004 4.004 10 C -0.222 4.222 11 C 0.337 3.663 12 O -0.439 6.439 13 N -0.356 5.356 14 C -0.019 4.019 15 C 0.214 3.786 16 O -0.484 6.484 17 N -0.184 5.184 18 C -0.435 4.435 19 H 0.122 0.878 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.160 0.840 33 H 0.141 0.859 34 H 0.249 0.751 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.771 25.758 8.956 27.329 hybrid contribution 0.811 -1.622 -0.649 1.926 sum 2.582 24.136 8.307 25.656 Atomic orbital electron populations 1.20302 0.85317 1.04183 1.03765 1.22488 0.97218 0.88788 0.97349 1.77230 0.84914 1.21962 1.26024 1.48300 1.06496 1.02810 1.56363 1.22043 0.83962 0.94542 1.04184 1.22295 0.90352 0.84153 1.05091 1.98452 1.35248 1.65524 1.96671 1.18927 0.89088 0.94724 1.18536 1.21523 0.95734 0.88144 0.95032 1.21964 1.04249 0.93777 1.02239 1.17020 0.81902 0.86257 0.81111 1.90807 1.33784 1.80045 1.39289 1.45676 1.44610 1.09320 1.35977 1.20945 0.99551 0.81930 0.99500 1.19776 0.87315 0.83628 0.87888 1.90494 1.39380 1.68302 1.50261 1.41793 1.38194 1.07067 1.31385 1.19678 1.21369 0.91654 1.10752 0.87760 1.25325 0.96978 0.96843 0.98602 1.69610 1.33476 1.11640 1.38789 0.85870 0.79509 0.78004 0.80564 1.19801 1.20865 1.19790 0.89703 0.90299 0.89511 0.89959 0.88999 0.88339 0.84041 0.85879 0.75091 0.89795 0.89771 0.77013 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.28 36.01 0.37 -0.18 16 2 C 0.11 1.10 7.27 -81.96 -0.60 0.50 16 3 N -0.28 -3.00 12.49 33.93 0.42 -2.58 16 4 N -0.36 -3.37 3.98 -64.23 -0.26 -3.63 16 5 C 0.09 0.48 11.28 59.84 0.67 1.16 16 6 C 0.14 1.40 7.49 -16.29 -0.12 1.28 16 7 Cl 0.01 0.12 27.77 -51.86 -1.44 -1.32 16 8 C -0.20 -2.19 5.84 -105.08 -0.61 -2.80 16 9 C 0.02 0.20 9.18 -37.21 -0.34 -0.15 16 10 C -0.20 -2.59 8.81 -39.35 -0.35 -2.94 16 11 C 0.55 8.84 7.56 -14.92 -0.11 8.73 16 12 O -0.56 -10.45 16.11 5.14 0.08 -10.37 16 13 N -0.70 -12.01 5.52 -64.38 -0.36 -12.37 16 14 C 0.11 2.03 6.15 -5.19 -0.03 2.00 16 15 C 0.43 9.91 7.85 -10.99 -0.09 9.82 16 16 O -0.60 -15.40 15.24 5.54 0.08 -15.32 16 17 N -0.55 -13.72 5.29 -10.96 -0.06 -13.78 16 18 C -0.31 -8.33 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 20 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 21 N -0.89 -23.97 13.05 55.50 0.72 -23.25 16 22 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.58 8.01 -51.93 -0.42 0.17 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.36 7.79 -51.93 -0.40 -0.05 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.14 1.63 7.45 -52.49 -0.39 1.24 16 33 H 0.12 1.44 7.82 -52.49 -0.41 1.03 16 34 H 0.41 6.91 7.39 -40.82 -0.30 6.61 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -33.23 357.87 -6.16 -39.40 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -4.29 Total: 12.69 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -1.45 Total: 9.53 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.48 Total: -55.60 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: 0.17 Total: -25.69 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -1.44 Total: -1.32 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.23 -6.16 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492918490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.219 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds