Wall clock time and date at job start Tue Mar 31 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30414 * 125.96944 * 2 1 4 4 N 1.39912 * 109.03055 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.73785 * 180.02562 * 4 3 2 6 6 C 1.34470 * 108.52154 * 359.72814 * 4 3 2 7 7 Cl 1.73603 * 126.34558 * 180.26763 * 6 4 3 8 8 C 1.38518 * 107.31528 * 0.42824 * 6 4 3 9 9 C 1.46849 * 126.46945 * 179.83466 * 8 6 4 10 10 C 1.35131 * 119.99749 * 309.97198 * 9 8 6 11 11 C 1.41734 * 119.99784 * 179.72376 * 10 9 8 12 12 O 1.21753 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99657 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99725 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47131 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99672 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99864 * 179.97438 * 15 14 13 18 18 C 1.37107 * 119.99826 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99605 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00069 * 179.97438 * 18 17 15 21 21 N 1.31420 * 119.99979 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00095 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47206 * 60.00333 * 22 20 18 24 24 H 1.48505 * 109.47269 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47105 * 300.00161 * 22 20 18 26 26 H 1.09001 * 109.47251 * 269.95483 * 1 2 3 27 27 H 1.09000 * 109.47006 * 29.96406 * 1 2 3 28 28 H 1.08999 * 109.46927 * 149.95827 * 1 2 3 29 29 H 1.08995 * 109.47363 * 90.02711 * 5 4 3 30 30 H 1.09004 * 109.47085 * 210.02356 * 5 4 3 31 31 H 1.09000 * 109.47295 * 330.02259 * 5 4 3 32 32 H 1.08002 * 119.99815 * 129.68506 * 9 8 6 33 33 H 1.08001 * 119.99843 * 359.71303 * 10 9 8 34 34 H 0.97001 * 120.00485 * 359.97438 * 13 11 10 35 35 H 1.08995 * 109.46852 * 299.99778 * 14 13 11 36 36 H 1.09001 * 109.47048 * 59.99797 * 14 13 11 37 37 H 0.96993 * 120.00302 * 0.02562 * 17 15 14 38 38 H 0.96995 * 119.99975 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0555 0.0000 4 7 3.6114 0.6478 -0.0006 5 6 4.7764 1.5360 -0.0002 6 6 3.6486 -0.6963 0.0051 7 17 5.0747 -1.6862 0.0134 8 6 2.3381 -1.1450 -0.0006 9 6 1.8948 -2.5450 -0.0008 10 6 2.4118 -3.4172 -0.8941 11 6 1.9883 -4.7698 -0.8905 12 8 1.1590 -5.1459 -0.0824 13 7 2.5037 -5.6396 -1.7817 14 6 2.0663 -7.0378 -1.7777 15 6 2.7880 -7.7931 -2.8638 16 8 3.5893 -7.2198 -3.5713 17 7 2.5439 -9.1056 -3.0483 18 6 3.2010 -9.7928 -4.0361 19 1 3.9145 -9.2824 -4.6661 20 6 2.9497 -11.1462 -4.2260 21 7 2.0819 -11.7673 -3.4591 22 14 3.8454 -12.0826 -5.5714 23 1 5.3089 -12.0203 -5.3277 24 1 3.4024 -13.5000 -5.5671 25 1 3.5366 -11.4720 -6.8893 26 1 -0.3634 -0.0008 1.0277 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3633 -0.8896 -0.5145 29 1 5.0658 1.7553 1.0274 30 1 5.6047 1.0491 -0.5150 31 1 4.5255 2.4646 -0.5130 32 1 1.1589 -2.8785 0.7159 33 1 3.1477 -3.0836 -1.6108 34 1 3.1641 -5.3399 -2.4258 35 1 2.2928 -7.4865 -0.8106 36 1 0.9920 -7.0830 -1.9565 37 1 1.9035 -9.5641 -2.4823 38 1 1.9063 -12.7119 -3.5919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492918490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:31 Heat of formation + Delta-G solvation = -11.835724 kcal Electronic energy + Delta-G solvation = -23647.381338 eV Core-core repulsion = 19744.946095 eV Total energy + Delta-G solvation = -3902.435243 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42130 -41.04982 -39.91778 -38.08029 -36.26651 -35.78446 -35.22697 -34.23509 -33.36221 -30.98497 -30.41316 -29.17573 -27.04089 -26.24731 -24.15096 -22.08441 -21.37057 -21.07346 -20.48516 -19.96799 -18.72345 -18.02175 -17.33183 -16.99302 -16.88132 -16.68988 -16.38638 -15.93503 -15.66731 -15.40286 -15.20647 -14.78986 -14.46845 -14.22186 -13.94358 -13.65193 -13.63925 -13.58619 -13.52522 -13.30696 -13.16460 -12.89296 -12.74169 -12.51628 -12.46269 -12.13093 -11.82673 -11.55502 -11.14562 -10.88278 -10.54796 -10.31981 -10.16568 -10.06509 -9.28731 -8.49975 -6.00278 -0.12595 0.23806 0.55030 1.38728 1.42822 1.43506 1.52710 1.54205 1.91659 2.15169 2.36169 2.39582 3.15417 3.17104 3.24614 3.77532 3.84532 4.12031 4.22122 4.23609 4.29219 4.31451 4.37765 4.46976 4.52560 4.57196 4.80363 4.86811 4.96677 5.19538 5.26763 5.36861 5.39697 5.43352 5.56161 5.92829 6.37921 6.47962 6.58384 7.04271 7.20540 7.45585 7.95786 8.66691 Molecular weight = 326.09amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.002130 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.066333 B =13141.511048 C =13883.606856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.105 3.895 3 N -0.298 5.298 4 N -0.356 5.356 5 C 0.082 3.918 6 C 0.137 3.863 7 Cl 0.020 6.980 8 C -0.224 4.224 9 C 0.047 3.953 10 C -0.218 4.218 11 C 0.553 3.447 12 O -0.586 6.586 13 N -0.706 5.706 14 C 0.121 3.879 15 C 0.433 3.567 16 O -0.625 6.625 17 N -0.560 5.560 18 C -0.338 4.338 19 H 0.086 0.914 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.413 0.587 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.399 0.601 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 25.589 9.079 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 N -0.121 5.121 4 N -0.137 5.137 5 C -0.057 4.057 6 C -0.020 4.020 7 Cl 0.048 6.952 8 C -0.237 4.237 9 C 0.026 3.974 10 C -0.239 4.239 11 C 0.345 3.655 12 O -0.470 6.470 13 N -0.359 5.359 14 C -0.007 4.007 15 C 0.220 3.780 16 O -0.513 6.513 17 N -0.195 5.195 18 C -0.467 4.467 19 H 0.104 0.896 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.195 1.195 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.160 0.840 33 H 0.152 0.848 34 H 0.251 0.749 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.233 0.767 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.041 26.765 9.151 28.359 hybrid contribution 0.758 -1.774 -0.629 2.029 sum 2.799 24.990 8.522 26.551 Atomic orbital electron populations 1.20426 0.83570 1.04770 1.04845 1.22909 0.98415 0.88237 0.96479 1.77207 0.85621 1.22424 1.26855 1.48661 1.07011 1.02933 1.55102 1.22416 0.83046 0.94607 1.05663 1.22397 0.90438 0.84773 1.04413 1.98456 1.34791 1.65390 1.96594 1.18973 0.89790 0.94472 1.20501 1.21565 0.94099 0.88312 0.93415 1.21769 1.06020 0.92252 1.03901 1.17380 0.81053 0.87007 0.80050 1.90791 1.35170 1.80664 1.40380 1.45687 1.44965 1.08695 1.36539 1.20774 0.99432 0.82461 0.98001 1.20457 0.86478 0.83150 0.87949 1.90470 1.40513 1.68804 1.51487 1.41846 1.38521 1.07745 1.31414 1.19698 1.22407 0.92603 1.11983 0.89617 1.26135 0.97436 0.97105 1.00515 1.69677 1.34050 1.12113 1.39742 0.84926 0.78320 0.77008 0.77724 1.19502 1.19613 1.19494 0.88309 0.89362 0.89255 0.88374 0.87682 0.87109 0.84028 0.84785 0.74909 0.88732 0.88658 0.76668 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.28 71.24 0.73 -0.25 16 2 C 0.11 2.00 7.27 43.57 0.32 2.32 16 3 N -0.30 -5.99 12.49 -46.57 -0.58 -6.57 16 4 N -0.36 -6.13 3.98 -357.12 -1.42 -7.55 16 5 C 0.08 0.69 11.28 127.77 1.44 2.13 16 6 C 0.14 2.62 7.49 84.36 0.63 3.25 16 7 Cl 0.02 0.34 27.77 -2.72 -0.08 0.26 16 8 C -0.22 -4.63 5.84 -20.16 -0.12 -4.75 16 9 C 0.05 1.05 9.18 23.81 0.22 1.27 16 10 C -0.22 -5.43 8.81 22.42 0.20 -5.24 16 11 C 0.55 17.51 7.56 85.11 0.64 18.16 16 12 O -0.59 -21.60 16.11 -4.52 -0.07 -21.67 16 13 N -0.71 -23.81 5.52 -475.78 -2.63 -26.43 16 14 C 0.12 4.49 6.15 85.63 0.53 5.02 16 15 C 0.43 20.15 7.85 87.66 0.69 20.84 16 16 O -0.62 -32.56 15.24 -3.08 -0.05 -32.61 16 17 N -0.56 -28.31 5.29 -306.98 -1.62 -29.93 16 18 C -0.34 -18.68 9.68 84.04 0.81 -17.87 16 19 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 20 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 21 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 22 Si 1.00 41.86 29.55 68.60 2.03 43.89 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.08 8.01 -2.39 -0.02 1.06 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 0.60 7.79 -2.38 -0.02 0.59 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.14 3.13 7.45 -2.91 -0.02 3.11 16 33 H 0.13 3.01 7.82 -2.91 -0.02 2.99 16 34 H 0.41 13.79 7.39 -92.71 -0.69 13.10 16 35 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 38 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -70.18 357.87 2.13 -68.04 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.29 Total: 36.35 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 6.56 Total: 24.75 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -5.97 Total: -119.01 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -0.12 Total: -54.28 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -0.08 Total: 0.26 kcal Total: -70.18 2.13 -68.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492918490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.207 kcal (2) G-P(sol) polarization free energy of solvation -70.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds