Wall clock time and date at job start Tue Mar 31 2020 04:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34709 * 117.00305 * 2 1 4 4 O 1.21472 * 119.99660 * 0.02562 * 3 2 1 5 5 C 1.47717 * 120.00067 * 180.02562 * 3 2 1 6 6 C 1.39608 * 120.56973 * 359.97438 * 5 3 2 7 7 N 1.31654 * 120.56404 * 179.97438 * 6 5 3 8 8 C 1.31959 * 121.88256 * 0.02562 * 7 6 5 9 9 C 1.38319 * 121.09392 * 359.97438 * 8 7 6 10 10 S 1.76201 * 120.34433 * 180.02562 * 9 8 7 11 11 O 1.42105 * 106.40080 * 203.54143 * 10 9 8 12 12 O 1.42101 * 106.40345 * 336.46397 * 10 9 8 13 13 N 1.65601 * 107.21581 * 90.00422 * 10 9 8 14 14 C 1.36930 * 120.00024 * 90.00279 * 13 10 9 15 15 H 1.08009 * 119.99787 * 228.26878 * 14 13 10 16 16 C 1.38814 * 120.00616 * 48.26302 * 14 13 10 17 17 N 1.31624 * 119.99455 * 25.22105 * 16 14 13 18 18 Si 1.86791 * 120.00409 * 205.22382 * 16 14 13 19 19 H 1.48496 * 109.47460 * 89.99813 * 18 16 14 20 20 H 1.48498 * 109.47431 * 210.00170 * 18 16 14 21 21 H 1.48507 * 109.47219 * 329.99955 * 18 16 14 22 22 C 1.46502 * 119.99670 * 269.99761 * 13 10 9 23 23 C 1.53002 * 117.49737 * 188.89997 * 22 13 10 24 24 C 1.53002 * 117.49717 * 120.24148 * 22 13 10 25 25 C 1.38380 * 119.30763 * 359.74648 * 9 8 7 26 26 H 1.08996 * 109.47519 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46936 * 300.00004 * 1 2 3 28 28 H 1.08998 * 109.47035 * 59.99528 * 1 2 3 29 29 H 1.08007 * 119.71945 * 0.02562 * 6 5 3 30 30 H 1.08003 * 119.45596 * 180.02562 * 8 7 6 31 31 H 0.97003 * 119.99846 * 174.26269 * 17 16 14 32 32 H 1.09004 * 115.55232 * 334.56911 * 22 13 10 33 33 H 1.08997 * 117.49706 * 0.02562 * 23 22 13 34 34 H 1.09000 * 117.49861 * 145.02065 * 23 22 13 35 35 H 1.08999 * 117.49932 * 214.97536 * 24 22 13 36 36 H 1.08998 * 117.49841 * 359.97386 * 24 22 13 37 37 H 1.08006 * 120.85734 * 180.27067 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2775 -0.0006 6 6 4.3107 0.1142 -0.0006 7 7 5.6254 0.1832 -0.0016 8 6 6.2627 1.3387 -0.0021 9 6 5.5706 2.5362 -0.0022 10 16 6.4417 4.0679 -0.0036 11 8 5.5541 5.0348 0.5411 12 8 7.7268 3.7991 0.5399 13 7 6.6827 4.4932 -1.5858 14 6 5.7515 5.2554 -2.2393 15 1 5.4035 4.9608 -3.2185 16 6 5.2547 6.4065 -1.6435 17 7 5.9718 7.0427 -0.7416 18 14 3.5685 7.0525 -2.1215 19 1 2.5385 6.4492 -1.2382 20 1 3.5440 8.5298 -1.9732 21 1 3.2823 6.6921 -3.5335 22 6 7.8922 4.0541 -2.2862 23 6 8.1608 4.6464 -3.6711 24 6 7.7105 3.1897 -3.5355 25 6 4.1869 2.5189 -0.0070 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.8251 -0.8506 -0.0006 30 1 7.3427 1.3496 -0.0034 31 1 5.6627 7.8907 -0.3862 32 1 8.7539 3.8468 -1.6517 33 1 7.4380 5.3630 -4.0609 34 1 9.1993 4.8284 -3.9478 35 1 8.4529 2.4140 -3.7231 36 1 6.6912 2.9473 -3.8360 37 1 3.6213 3.4390 -0.0115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515199521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:08 Heat of formation + Delta-G solvation = -74.538408 kcal Electronic energy + Delta-G solvation = -26270.008868 eV Core-core repulsion = 22334.605588 eV Total energy + Delta-G solvation = -3935.403280 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 326.081 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67954 -39.38377 -37.28465 -36.49436 -35.76731 -34.23917 -33.41965 -32.45104 -31.61226 -30.76164 -27.92229 -25.10412 -24.59351 -23.60019 -21.67670 -21.32448 -20.65220 -19.07621 -18.46804 -17.38424 -16.85999 -16.43989 -16.41953 -16.13526 -15.89281 -15.47257 -15.12511 -14.30884 -14.15414 -13.82008 -13.78117 -13.37140 -13.13510 -12.96376 -12.56114 -12.35138 -12.26112 -11.84632 -11.52659 -11.21945 -11.02164 -10.92156 -10.90982 -10.71879 -10.53320 -10.46354 -10.36031 -10.20140 -10.08832 -9.89398 -9.48791 -9.27412 -9.24191 -8.78326 -7.68015 -6.68719 -4.28651 0.55619 1.16803 1.79460 2.52166 2.56438 3.15183 3.22081 3.27938 3.77745 4.01346 4.38042 4.45495 4.61730 4.70551 4.79329 4.88311 4.96520 5.04302 5.18058 5.20975 5.26140 5.32848 5.50643 5.63109 5.69007 5.75237 5.97103 6.10300 6.19918 6.23323 6.29240 6.41644 6.62677 6.65290 6.90822 7.24455 7.35796 7.65601 7.87485 8.03816 8.71701 9.13578 10.35461 Molecular weight = 326.08amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.005811 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.436912 B = 4816.980928 C = 5935.790243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.516 3.484 4 O -0.497 6.497 5 C -0.210 4.210 6 C 0.180 3.820 7 N -0.508 5.508 8 C 0.211 3.789 9 C -0.719 4.719 10 S 2.540 3.460 11 O -0.939 6.939 12 O -1.008 7.008 13 N -0.779 5.779 14 C -0.274 4.274 15 H 0.086 0.914 16 C 0.061 3.939 17 N -0.759 5.759 18 Si 0.919 3.081 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.267 1.267 22 C 0.094 3.906 23 C -0.161 4.161 24 C -0.214 4.214 25 C 0.084 3.916 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.284 0.716 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 -9.957 -2.848 11.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.360 3.640 4 O -0.385 6.385 5 C -0.214 4.214 6 C 0.021 3.979 7 N -0.217 5.217 8 C 0.055 3.945 9 C -0.793 4.793 10 S 2.638 3.362 11 O -0.926 6.926 12 O -0.997 6.997 13 N -0.600 5.600 14 C -0.424 4.424 15 H 0.104 0.896 16 C -0.159 4.159 17 N -0.394 5.394 18 Si 0.743 3.257 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.015 4.015 23 C -0.200 4.200 24 C -0.254 4.254 25 C 0.058 3.942 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.186 0.814 30 H 0.189 0.811 31 H 0.095 0.905 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.080 -10.156 -1.622 11.065 hybrid contribution -1.921 0.470 -0.302 2.000 sum -6.001 -9.686 -1.924 11.556 Atomic orbital electron populations 1.23281 0.75922 1.03656 1.02802 1.86516 1.23628 1.32626 1.84663 1.20955 0.88628 0.81534 0.72853 1.90874 1.66501 1.35867 1.45283 1.20185 0.90200 0.96838 1.14197 1.23261 0.89538 0.97586 0.87525 1.67847 1.09629 1.29353 1.14895 1.22808 1.00749 0.86267 0.84648 1.33935 1.06285 1.27175 1.11946 1.12273 0.73596 0.73115 0.77263 1.93441 1.66031 1.55211 1.77932 1.93297 1.40810 1.85952 1.79627 1.52517 1.22002 1.53542 1.31957 1.19091 1.18860 1.01326 1.03098 0.89638 1.25724 0.99408 0.95407 0.95367 1.69810 1.35890 1.12282 1.21424 0.86059 0.82227 0.78104 0.79266 1.18998 1.20373 1.19104 1.21428 0.89679 1.01995 0.88390 1.23097 1.01450 0.95994 0.99479 1.23373 1.02148 0.94057 1.05791 1.21475 0.92990 0.97455 0.82309 0.87963 0.91788 0.91707 0.81430 0.81146 0.90533 0.85991 0.87295 0.89600 0.89585 0.89068 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.64 9.85 -40.52 -0.40 -5.04 16 3 C 0.52 8.47 7.91 34.60 0.27 8.74 16 4 O -0.50 -9.48 16.21 -19.24 -0.31 -9.80 16 5 C -0.21 -3.64 5.89 -104.84 -0.62 -4.26 16 6 C 0.18 2.78 10.79 -17.12 -0.18 2.59 16 7 N -0.51 -8.69 10.35 -12.89 -0.13 -8.82 16 8 C 0.21 3.91 10.68 -17.47 -0.19 3.72 16 9 C -0.72 -14.81 5.98 -39.50 -0.24 -15.05 16 10 S 2.54 60.75 5.46 -107.50 -0.59 60.17 16 11 O -0.94 -25.32 13.35 -57.17 -0.76 -26.08 16 12 O -1.01 -25.26 16.08 -57.17 -0.92 -26.18 16 13 N -0.78 -17.76 3.06 -53.42 -0.16 -17.92 16 14 C -0.27 -6.42 7.67 -15.06 -0.12 -6.54 16 15 H 0.09 1.89 7.75 -52.48 -0.41 1.48 16 16 C 0.06 1.50 4.00 -17.43 -0.07 1.43 16 17 N -0.76 -19.99 11.51 55.49 0.64 -19.35 16 18 Si 0.92 19.50 29.63 -169.99 -5.04 14.46 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 22 C 0.09 1.84 6.39 -67.93 -0.43 1.40 16 23 C -0.16 -2.73 9.84 -26.69 -0.26 -3.00 16 24 C -0.21 -3.48 10.27 -26.69 -0.27 -3.75 16 25 C 0.08 1.68 9.18 -38.85 -0.36 1.33 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.17 1.99 7.62 -52.48 -0.40 1.59 16 30 H 0.17 2.89 7.62 -52.48 -0.40 2.49 16 31 H 0.28 7.04 8.32 -40.82 -0.34 6.70 16 32 H 0.12 2.33 7.37 -51.93 -0.38 1.95 16 33 H 0.11 1.97 6.99 -51.93 -0.36 1.61 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 37 H 0.16 3.38 7.39 -52.48 -0.39 2.99 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -31.12 337.86 -7.99 -39.11 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.01 Total: 6.30 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.40 Total: -11.95 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.34 Total: -46.09 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: -2.39 Total: -67.09 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.04 Total: 14.46 kcal Atomic # 16 Polarization: 60.75 SS G_CDS: -0.59 Total: 60.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.12 -7.99 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515199521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.426 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds